Wall clock time and date at job start Fri Apr 10 2020 17:48:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47536 * 2 1 4 4 C 1.52998 * 109.46939 * 239.99517 * 2 1 3 5 5 C 1.50700 * 109.47113 * 65.00202 * 4 2 1 6 6 N 1.34777 * 120.00281 * 179.97438 * 5 4 2 7 7 O 1.21282 * 119.99760 * 359.97438 * 5 4 2 8 8 C 1.50702 * 109.46845 * 120.00017 * 2 1 3 9 9 O 1.21287 * 120.00182 * 119.99941 * 8 2 1 10 10 N 1.34782 * 119.99929 * 299.99660 * 8 2 1 11 11 C 1.46503 * 119.99924 * 180.02562 * 10 8 2 12 12 C 1.52993 * 109.46933 * 180.02562 * 11 10 8 13 13 O 1.42901 * 110.64318 * 61.85523 * 12 11 10 14 14 C 1.55156 * 110.71978 * 184.99796 * 12 11 10 15 15 C 1.54909 * 101.58520 * 154.04098 * 14 12 11 16 16 N 1.47428 * 104.83177 * 322.99367 * 15 14 12 17 17 C 1.36934 * 125.64941 * 204.09213 * 16 15 14 18 18 H 1.08005 * 119.99945 * 168.09556 * 17 16 15 19 19 C 1.38808 * 120.00062 * 348.09168 * 17 16 15 20 20 N 1.31616 * 120.00209 * 325.98205 * 19 17 16 21 21 Si 1.86797 * 120.00020 * 145.97635 * 19 17 16 22 22 H 1.48505 * 109.46896 * 60.00699 * 21 19 17 23 23 H 1.48501 * 109.47246 * 180.02562 * 21 19 17 24 24 H 1.48496 * 109.47334 * 300.00799 * 21 19 17 25 25 C 1.47022 * 108.70213 * 24.35224 * 16 15 14 26 26 H 1.09002 * 109.47436 * 300.00212 * 1 2 3 27 27 H 1.09002 * 109.47154 * 60.00184 * 1 2 3 28 28 H 1.09000 * 109.47056 * 180.02562 * 1 2 3 29 29 H 1.09008 * 109.46832 * 185.00186 * 4 2 1 30 30 H 1.09004 * 109.47680 * 304.99983 * 4 2 1 31 31 H 0.96998 * 119.99655 * 359.97438 * 6 5 4 32 32 H 0.96990 * 120.00047 * 180.02562 * 6 5 4 33 33 H 0.97000 * 119.99876 * 0.02562 * 10 8 2 34 34 H 1.09001 * 109.47334 * 59.99647 * 11 10 8 35 35 H 1.09000 * 109.47077 * 300.00156 * 11 10 8 36 36 H 0.96698 * 113.99960 * 303.14611 * 13 12 11 37 37 H 1.09008 * 111.00201 * 35.96674 * 14 12 11 38 38 H 1.09000 * 111.00349 * 272.11738 * 14 12 11 39 39 H 1.08995 * 110.37269 * 204.15531 * 15 14 12 40 40 H 1.09004 * 110.36332 * 81.82771 * 15 14 12 41 41 H 0.97004 * 119.99808 * 354.25074 * 20 19 17 42 42 H 1.09001 * 109.88532 * 118.13560 * 25 16 15 43 43 H 1.09005 * 109.88581 * 239.29838 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7214 -1.2492 5 6 1.6413 0.0569 -2.4766 6 7 1.9852 -0.3916 -3.7001 7 8 1.0109 1.0868 -2.3633 8 6 2.0323 -0.7104 1.2305 9 8 2.7295 -1.6966 1.1193 10 7 1.7067 -0.2499 2.4546 11 6 2.1954 -0.9402 3.6508 12 6 1.6848 -0.2193 4.9000 13 8 0.2568 -0.2431 4.9470 14 6 2.2869 -0.8509 6.1829 15 6 2.2332 0.3408 7.1711 16 7 2.5457 1.5254 6.3509 17 6 3.0633 2.7045 6.8166 18 1 3.4366 3.4422 6.1217 19 6 3.1082 2.9517 8.1818 20 7 2.1558 2.4924 8.9654 21 14 4.5205 3.9362 8.9067 22 1 4.5451 5.2897 8.2962 23 1 4.3363 4.0584 10.3752 24 1 5.8031 3.2428 8.6252 25 6 2.2035 1.2333 4.9512 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.1263 -0.7996 -1.2055 30 1 1.6053 -1.7200 -1.2951 31 1 2.4897 -1.2151 -3.7906 32 1 1.7290 0.1095 -4.4900 33 1 1.1487 0.5386 2.5436 34 1 3.2854 -0.9399 3.6507 35 1 1.8324 -1.9680 3.6510 36 1 -0.1688 0.1403 4.1680 37 1 3.3146 -1.1729 6.0146 38 1 1.6725 -1.6792 6.5360 39 1 2.9783 0.2162 7.9567 40 1 1.2365 0.4308 7.6031 41 1 1.3807 2.0538 8.5809 42 1 1.4280 1.9183 4.6084 43 1 3.0902 1.3306 4.3247 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699903369.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:48:29 Heat of formation + Delta-G solvation = -111.840055 kcal Electronic energy + Delta-G solvation = -24852.957462 eV Core-core repulsion = 21126.332401 eV Total energy + Delta-G solvation = -3726.625061 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.55802 -39.60568 -38.60354 -35.40200 -34.48236 -34.21448 -34.04342 -32.25837 -29.62342 -28.71390 -27.90165 -25.72187 -24.37138 -23.19668 -21.13743 -20.45631 -20.07957 -19.81487 -18.05706 -17.68119 -17.48167 -16.79894 -16.28799 -15.92183 -15.67787 -15.18479 -14.81990 -14.38192 -14.18828 -13.76498 -13.73703 -13.52501 -13.24854 -13.15503 -12.95231 -12.83941 -12.26483 -12.20466 -11.83002 -11.53634 -11.39597 -11.04786 -10.77806 -10.63633 -10.48882 -10.40221 -10.28353 -10.08183 -10.02548 -9.82844 -9.71680 -9.54369 -9.17192 -8.34544 -6.98799 -6.16075 -3.09660 2.27762 2.51350 2.85315 3.33515 3.50664 3.55721 3.73335 4.23342 4.31902 4.49995 4.58144 4.64678 4.73992 4.83644 5.04832 5.11032 5.19891 5.25582 5.29169 5.36566 5.50255 5.59336 5.72839 5.75459 5.83176 5.98909 6.00457 6.16987 6.24873 6.30849 6.38639 6.42779 6.47671 6.90668 6.94933 7.07988 7.32106 7.76083 7.79866 7.88104 8.06766 8.47093 8.99134 9.80626 10.35416 11.18551 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.023675 B = 0.003001 C = 0.002846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.380097 B = 9327.177041 C = 9837.306338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.096 4.096 3 H 0.107 0.893 4 C -0.124 4.124 5 C 0.518 3.482 6 N -0.858 5.858 7 O -0.540 6.540 8 C 0.520 3.480 9 O -0.545 6.545 10 N -0.724 5.724 11 C 0.105 3.895 12 C 0.105 3.895 13 O -0.544 6.544 14 C -0.119 4.119 15 C 0.148 3.852 16 N -0.598 5.598 17 C -0.347 4.347 18 H 0.066 0.934 19 C -0.021 4.021 20 N -0.906 5.906 21 Si 1.057 2.943 22 H -0.293 1.293 23 H -0.285 1.285 24 H -0.294 1.294 25 C 0.117 3.883 26 H 0.061 0.939 27 H 0.086 0.914 28 H 0.056 0.944 29 H 0.104 0.896 30 H 0.102 0.898 31 H 0.402 0.598 32 H 0.401 0.599 33 H 0.400 0.600 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.366 0.634 37 H 0.080 0.920 38 H 0.076 0.924 39 H 0.054 0.946 40 H 0.030 0.970 41 H 0.270 0.730 42 H 0.025 0.975 43 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.842 -9.277 -22.157 24.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.118 4.118 3 H 0.125 0.875 4 C -0.165 4.165 5 C 0.304 3.696 6 N -0.421 5.421 7 O -0.417 6.417 8 C 0.306 3.694 9 O -0.422 6.422 10 N -0.376 5.376 11 C -0.019 4.019 12 C 0.064 3.936 13 O -0.348 6.348 14 C -0.158 4.158 15 C 0.023 3.977 16 N -0.325 5.325 17 C -0.474 4.474 18 H 0.084 0.916 19 C -0.223 4.223 20 N -0.546 5.546 21 Si 0.887 3.113 22 H -0.220 1.220 23 H -0.211 1.211 24 H -0.221 1.221 25 C -0.010 4.010 26 H 0.080 0.920 27 H 0.105 0.895 28 H 0.075 0.925 29 H 0.122 0.878 30 H 0.120 0.880 31 H 0.231 0.769 32 H 0.231 0.769 33 H 0.235 0.765 34 H 0.098 0.902 35 H 0.094 0.906 36 H 0.213 0.787 37 H 0.099 0.901 38 H 0.094 0.906 39 H 0.072 0.928 40 H 0.048 0.952 41 H 0.081 0.919 42 H 0.043 0.957 43 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -0.917 -8.981 -19.895 21.848 hybrid contribution -0.860 -0.014 -2.420 2.568 sum -1.777 -8.995 -22.315 24.125 Atomic orbital electron populations 1.21922 0.92182 1.02484 1.04201 1.21016 0.98420 1.01110 0.91216 0.87470 1.21456 1.04029 1.00061 0.90915 1.20697 0.78325 0.85323 0.85298 1.43889 1.60242 1.29665 1.08311 1.90734 1.39658 1.24583 1.86722 1.20559 0.79836 0.84411 0.84605 1.90693 1.38119 1.26489 1.86934 1.45972 1.53790 1.32097 1.05783 1.22049 1.00264 0.96594 0.83036 1.22536 0.80886 0.96027 0.94167 1.86623 1.17995 1.84407 1.45787 1.22821 0.99861 0.99078 0.93998 1.21500 0.98907 0.84386 0.92944 1.44514 1.75178 1.11567 1.01229 1.19666 1.38250 0.96013 0.93507 0.91573 1.25670 1.02020 1.01790 0.92846 1.70782 1.06919 1.38104 1.38750 0.83645 0.76153 0.75368 0.76181 1.22022 1.21104 1.22118 1.21926 0.97085 0.92140 0.89803 0.92001 0.89534 0.92508 0.87787 0.88006 0.76921 0.76864 0.76500 0.90215 0.90616 0.78744 0.90107 0.90560 0.92777 0.95228 0.91930 0.95747 0.94952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 8.83 37.16 0.33 -0.98 16 2 C -0.10 -0.91 2.37 -91.77 -0.22 -1.13 16 3 H 0.11 1.05 7.96 -51.93 -0.41 0.64 16 4 C -0.12 -0.99 4.52 -27.88 -0.13 -1.12 16 5 C 0.52 4.33 7.82 -10.99 -0.09 4.24 16 6 N -0.86 -4.02 8.87 31.22 0.28 -3.74 16 7 O -0.54 -6.52 14.80 5.56 0.08 -6.44 16 8 C 0.52 6.27 7.15 -10.98 -0.08 6.19 16 9 O -0.54 -8.20 15.92 5.55 0.09 -8.11 16 10 N -0.72 -8.53 5.02 -60.29 -0.30 -8.83 16 11 C 0.10 1.45 4.75 -4.04 -0.02 1.43 16 12 C 0.11 1.74 0.93 -88.78 -0.08 1.65 16 13 O -0.54 -8.77 13.09 -35.23 -0.46 -9.23 16 14 C -0.12 -2.15 6.26 -24.58 -0.15 -2.30 16 15 C 0.15 3.49 5.33 -2.53 -0.01 3.47 16 16 N -0.60 -15.19 3.33 -170.06 -0.57 -15.76 16 17 C -0.35 -9.89 9.97 -15.06 -0.15 -10.04 16 18 H 0.07 1.88 8.02 -52.48 -0.42 1.46 16 19 C -0.02 -0.59 4.95 -17.43 -0.09 -0.68 16 20 N -0.91 -27.58 12.87 55.49 0.71 -26.87 16 21 Si 1.06 25.44 30.03 -169.99 -5.10 20.34 16 22 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 24 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 25 C 0.12 2.35 6.04 -3.06 -0.02 2.33 16 26 H 0.06 0.48 7.56 -51.93 -0.39 0.09 16 27 H 0.09 0.85 5.95 -51.93 -0.31 0.54 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.10 0.81 7.96 -51.92 -0.41 0.39 16 30 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.40 0.81 8.83 -40.82 -0.36 0.45 16 32 H 0.40 1.56 8.93 -40.82 -0.36 1.19 16 33 H 0.40 4.07 6.79 -40.82 -0.28 3.80 16 34 H 0.08 1.18 8.13 -51.93 -0.42 0.76 16 35 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.37 4.41 8.05 45.56 0.37 4.77 16 37 H 0.08 1.35 8.04 -51.92 -0.42 0.94 16 38 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 39 H 0.05 1.38 7.82 -51.93 -0.41 0.97 16 40 H 0.03 0.76 7.03 -51.93 -0.36 0.40 16 41 H 0.27 8.31 6.45 -40.82 -0.26 8.05 16 42 H 0.02 0.50 8.07 -51.93 -0.42 0.08 16 43 H 0.03 0.65 7.83 -51.93 -0.41 0.24 16 LS Contribution 350.15 15.07 5.28 5.28 Total: -1.00 -36.59 350.15 -6.47 -43.05 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: -5.77 Total: 7.23 kcal Atomic # 6 Polarization: 3.78 SS G_CDS: -0.70 Total: 3.08 kcal Atomic # 7 Polarization: -55.32 SS G_CDS: 0.12 Total: -55.19 kcal Atomic # 8 Polarization: -23.49 SS G_CDS: -0.29 Total: -23.78 kcal Atomic # 14 Polarization: 25.44 SS G_CDS: -5.10 Total: 20.34 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -36.59 -6.47 -43.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699903369.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.785 kcal (2) G-P(sol) polarization free energy of solvation -36.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds