Wall clock time and date at job start Fri Apr 10 2020 17:48:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42904 * 109.47426 * 2 1 4 4 C 1.42900 * 114.00349 * 179.97438 * 3 2 1 5 5 H 1.08996 * 109.46789 * 330.00100 * 4 3 2 6 6 C 1.52997 * 109.47009 * 89.99756 * 4 3 2 7 7 C 1.50700 * 109.47015 * 210.00033 * 4 3 2 8 8 O 1.21274 * 120.00250 * 354.99833 * 7 4 3 9 9 N 1.34784 * 119.99706 * 175.00209 * 7 4 3 10 10 C 1.46493 * 119.99875 * 179.97438 * 9 7 4 11 11 C 1.53514 * 114.17020 * 154.99833 * 10 9 7 12 12 N 1.47482 * 87.93039 * 87.81444 * 11 10 9 13 13 C 1.46901 * 110.99764 * 138.70591 * 12 11 10 14 14 C 1.50701 * 109.46921 * 169.99672 * 13 12 11 15 15 O 1.21294 * 119.99849 * 0.02562 * 14 13 12 16 16 N 1.34780 * 119.99795 * 179.97438 * 14 13 12 17 17 C 1.37101 * 119.99707 * 180.02562 * 16 14 13 18 18 H 1.08002 * 119.99704 * 359.97438 * 17 16 14 19 19 C 1.38941 * 119.99927 * 180.02562 * 17 16 14 20 20 N 1.31413 * 120.00506 * 180.02562 * 19 17 16 21 21 Si 1.86804 * 120.00009 * 359.97438 * 19 17 16 22 22 H 1.48494 * 109.47177 * 89.99959 * 21 19 17 23 23 H 1.48505 * 109.47036 * 210.00243 * 21 19 17 24 24 H 1.48499 * 109.46776 * 329.99732 * 21 19 17 25 25 C 1.47480 * 87.83699 * 27.01095 * 12 11 10 26 26 H 1.08993 * 109.47142 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47134 * 300.00374 * 1 2 3 28 28 H 1.09007 * 109.47211 * 59.99922 * 1 2 3 29 29 H 1.09002 * 109.47492 * 239.99984 * 2 1 3 30 30 H 1.09008 * 109.47090 * 119.99536 * 2 1 3 31 31 H 1.09004 * 109.47161 * 60.00248 * 6 4 3 32 32 H 1.09003 * 109.47194 * 180.02562 * 6 4 3 33 33 H 1.08997 * 109.47350 * 300.00367 * 6 4 3 34 34 H 0.96998 * 120.00008 * 359.97438 * 9 7 4 35 35 H 1.08998 * 113.25916 * 22.04852 * 10 9 7 36 36 H 1.08994 * 113.47382 * 333.04288 * 11 10 9 37 37 H 1.09003 * 113.47448 * 202.58196 * 11 10 9 38 38 H 1.09002 * 109.47401 * 49.99700 * 13 12 11 39 39 H 1.09001 * 109.46874 * 289.99713 * 13 12 11 40 40 H 0.96995 * 120.00011 * 0.02562 * 16 14 13 41 41 H 0.96993 * 120.00255 * 180.02562 * 20 19 17 42 42 H 1.08999 * 113.47664 * 87.75895 * 25 12 11 43 43 H 1.08994 * 113.47488 * 218.22090 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.8631 0.6017 0.5147 6 6 3.9399 1.5001 -1.4417 7 6 3.8342 2.7265 0.7110 8 8 2.9856 3.5049 1.0915 9 7 5.1380 2.9940 0.9234 10 6 5.5301 4.2253 1.6135 11 6 6.8934 4.1460 2.3148 12 7 7.5112 4.5736 1.0457 13 6 8.5832 5.5491 1.2846 14 6 9.3492 5.7765 0.0068 15 8 9.0328 5.1845 -1.0035 16 7 10.3852 6.6384 -0.0135 17 6 11.0817 6.8457 -1.1761 18 1 10.8004 6.3179 -2.0754 19 6 12.1500 7.7338 -1.1970 20 7 12.8174 7.9329 -2.3114 21 14 12.6368 8.6460 0.3588 22 1 13.6383 7.8462 1.1087 23 1 13.2235 9.9617 -0.0019 24 1 11.4354 8.8554 1.2062 25 6 6.2423 5.2516 0.7211 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8901 31 1 3.5076 2.3586 -1.9559 32 1 5.0265 1.5857 -1.4413 33 1 3.6481 0.5842 -1.9555 34 1 5.8167 2.3713 0.6194 35 1 4.7350 4.6453 2.2296 36 1 7.1698 3.1349 2.6134 37 1 7.0100 4.8709 3.1205 38 1 9.2586 5.1667 2.0499 39 1 8.1493 6.4908 1.6206 40 1 10.6379 7.1121 0.7943 41 1 13.5633 8.5527 -2.3258 42 1 6.1853 6.2715 1.1014 43 1 5.9671 5.1773 -0.3309 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753370584.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:48:42 Heat of formation + Delta-G solvation = -70.798508 kcal Electronic energy + Delta-G solvation = -24029.972309 eV Core-core repulsion = 20305.126943 eV Total energy + Delta-G solvation = -3724.845366 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.79226 -39.55945 -38.09686 -37.62295 -34.20421 -33.86556 -32.60916 -31.67527 -30.58739 -29.62545 -26.02770 -25.88315 -24.70111 -23.42105 -22.96501 -20.85091 -19.90783 -19.38226 -18.40149 -17.47114 -17.30616 -16.24620 -16.02963 -16.01084 -15.44310 -15.33781 -14.88023 -14.81621 -14.48270 -13.67439 -13.51549 -13.47873 -13.24480 -13.11170 -12.85366 -12.65951 -12.52140 -12.43215 -12.26044 -12.07145 -11.71388 -11.55598 -11.38160 -11.24263 -11.17364 -10.78524 -10.60436 -10.20389 -9.98102 -9.66198 -9.56608 -9.17118 -8.92579 -8.34889 -8.17787 -6.31067 -3.82520 2.42953 2.60363 3.01332 3.05690 3.14118 3.59773 3.73459 3.93319 4.09741 4.29647 4.43531 4.58701 4.64339 4.72156 4.79403 4.80264 4.90312 5.00740 5.13005 5.20311 5.25890 5.31960 5.40143 5.45234 5.49906 5.50540 5.55884 5.57555 5.62074 5.80673 5.87592 5.90669 5.96394 6.34419 6.41221 6.78091 6.98367 7.38857 7.58032 8.08313 8.14140 8.60464 8.95518 9.42501 9.84170 10.82185 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.036491 B = 0.002452 C = 0.002349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.132398 B =11417.218610 C =11918.968782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.054 3.946 3 O -0.359 6.359 4 C 0.073 3.927 5 H 0.086 0.914 6 C -0.172 4.172 7 C 0.518 3.482 8 O -0.523 6.523 9 N -0.699 5.699 10 C 0.118 3.882 11 C -0.014 4.014 12 N -0.440 5.440 13 C 0.005 3.995 14 C 0.455 3.545 15 O -0.557 6.557 16 N -0.594 5.594 17 C -0.304 4.304 18 H 0.119 0.881 19 C 0.040 3.960 20 N -0.882 5.882 21 Si 0.880 3.120 22 H -0.271 1.271 23 H -0.277 1.277 24 H -0.270 1.270 25 C -0.009 4.009 26 H 0.071 0.929 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.051 0.949 30 H 0.049 0.951 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.069 0.931 34 H 0.409 0.591 35 H 0.111 0.889 36 H 0.090 0.910 37 H 0.081 0.919 38 H 0.090 0.910 39 H 0.062 0.938 40 H 0.369 0.631 41 H 0.273 0.727 42 H 0.078 0.922 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.679 -13.620 10.864 24.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.277 6.277 4 C 0.012 3.988 5 H 0.104 0.896 6 C -0.230 4.230 7 C 0.303 3.697 8 O -0.397 6.397 9 N -0.351 5.351 10 C 0.012 3.988 11 C -0.144 4.144 12 N -0.162 5.162 13 C -0.128 4.128 14 C 0.241 3.759 15 O -0.438 6.438 16 N -0.234 5.234 17 C -0.432 4.432 18 H 0.137 0.863 19 C -0.163 4.163 20 N -0.522 5.522 21 Si 0.707 3.293 22 H -0.196 1.196 23 H -0.202 1.202 24 H -0.196 1.196 25 C -0.140 4.140 26 H 0.090 0.910 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.091 0.909 32 H 0.096 0.904 33 H 0.088 0.912 34 H 0.244 0.756 35 H 0.128 0.872 36 H 0.109 0.891 37 H 0.099 0.901 38 H 0.108 0.892 39 H 0.080 0.920 40 H 0.202 0.798 41 H 0.084 0.916 42 H 0.096 0.904 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -18.149 -13.671 9.854 24.767 hybrid contribution 1.042 1.061 1.518 2.125 sum -17.107 -12.610 11.372 24.104 Atomic orbital electron populations 1.21727 0.93432 1.02192 1.03457 1.22595 0.95968 0.83549 1.00112 1.88059 1.18390 1.26296 1.94958 1.21853 0.83725 0.96245 0.96987 0.89627 1.22252 1.02258 1.03830 0.94657 1.20397 0.82479 0.87656 0.79203 1.90712 1.50202 1.48911 1.49882 1.45427 1.07045 1.23124 1.59544 1.21943 0.96311 0.85977 0.94598 1.24302 0.93035 1.02893 0.94131 1.68832 1.02519 1.27371 1.17488 1.22548 0.96192 0.95743 0.98268 1.19560 0.83160 0.83532 0.89693 1.90562 1.68329 1.50103 1.34776 1.42223 1.29687 1.39785 1.11698 1.19416 1.10112 1.24043 0.89669 0.86338 1.25037 0.96491 0.97529 0.97193 1.69619 1.20755 1.36133 1.25742 0.86665 0.79142 0.80438 0.83072 1.19644 1.20199 1.19588 1.24398 0.90095 0.96768 1.02711 0.91036 0.91683 0.91695 0.93108 0.93276 0.90905 0.90353 0.91223 0.75557 0.87157 0.89148 0.90072 0.89203 0.91989 0.79800 0.91638 0.90407 0.88940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 10.28 37.16 0.38 -0.65 16 2 C 0.05 0.42 6.47 37.16 0.24 0.66 16 3 O -0.36 -4.11 9.53 -55.09 -0.52 -4.63 16 4 C 0.07 0.71 3.13 -27.88 -0.09 0.62 16 5 H 0.09 0.59 7.79 -51.93 -0.40 0.19 16 6 C -0.17 -1.49 9.48 37.16 0.35 -1.14 16 7 C 0.52 6.45 7.18 -10.98 -0.08 6.37 16 8 O -0.52 -8.67 16.10 -14.30 -0.23 -8.91 16 9 N -0.70 -7.59 5.35 -53.54 -0.29 -7.87 16 10 C 0.12 1.34 4.59 -67.72 -0.31 1.03 16 11 C -0.01 -0.14 7.45 -7.54 -0.06 -0.20 16 12 N -0.44 -6.50 5.82 -246.09 -1.43 -7.93 16 13 C 0.00 0.07 5.30 -4.97 -0.03 0.05 16 14 C 0.46 10.29 7.85 -10.98 -0.09 10.21 16 15 O -0.56 -15.02 16.01 5.55 0.09 -14.93 16 16 N -0.59 -14.10 5.09 -10.96 -0.06 -14.16 16 17 C -0.30 -8.60 10.16 -14.94 -0.15 -8.76 16 18 H 0.12 3.85 7.39 -52.49 -0.39 3.46 16 19 C 0.04 1.10 5.50 -17.47 -0.10 1.01 16 20 N -0.88 -25.83 13.96 55.50 0.77 -25.05 16 21 Si 0.88 19.33 27.74 -169.99 -4.71 14.61 16 22 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 23 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 24 H -0.27 -5.39 6.52 56.52 0.37 -5.03 16 25 C -0.01 -0.13 7.53 -7.54 -0.06 -0.19 16 26 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.47 8.14 -51.92 -0.42 0.04 16 29 H 0.05 0.32 7.87 -51.93 -0.41 -0.09 16 30 H 0.05 0.32 8.09 -51.92 -0.42 -0.10 16 31 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.08 0.63 7.93 -51.93 -0.41 0.22 16 33 H 0.07 0.49 7.87 -51.93 -0.41 0.08 16 34 H 0.41 3.83 8.55 -40.82 -0.35 3.48 16 35 H 0.11 1.27 7.45 -51.93 -0.39 0.88 16 36 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.08 0.70 7.91 -51.93 -0.41 0.29 16 38 H 0.09 1.23 8.08 -51.93 -0.42 0.81 16 39 H 0.06 0.86 7.30 -51.93 -0.38 0.48 16 40 H 0.37 7.66 5.76 -40.82 -0.24 7.43 16 41 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 42 H 0.08 0.98 7.42 -51.93 -0.39 0.59 16 43 H 0.09 1.48 8.14 -51.93 -0.42 1.05 16 LS Contribution 361.79 15.07 5.45 5.45 Total: -1.00 -36.36 361.79 -7.62 -43.97 By element: Atomic # 1 Polarization: 17.13 SS G_CDS: -6.71 Total: 10.41 kcal Atomic # 6 Polarization: 9.00 SS G_CDS: 0.02 Total: 9.03 kcal Atomic # 7 Polarization: -54.01 SS G_CDS: -1.00 Total: -55.01 kcal Atomic # 8 Polarization: -27.80 SS G_CDS: -0.67 Total: -28.47 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -4.71 Total: 14.61 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -36.36 -7.62 -43.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753370584.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.824 kcal (2) G-P(sol) polarization free energy of solvation -36.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds