Wall clock time and date at job start Fri Apr 10 2020 17:48:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42904 * 109.47426 * 2 1 4 4 C 1.42900 * 114.00349 * 179.97438 * 3 2 1 5 5 H 1.08996 * 109.46789 * 330.00100 * 4 3 2 6 6 C 1.52997 * 109.47009 * 89.99756 * 4 3 2 7 7 C 1.50700 * 109.47015 * 210.00033 * 4 3 2 8 8 O 1.21274 * 120.00250 * 354.99833 * 7 4 3 9 9 N 1.34784 * 119.99706 * 175.00209 * 7 4 3 10 10 C 1.46493 * 119.99875 * 179.97438 * 9 7 4 11 11 C 1.53514 * 114.17020 * 154.99833 * 10 9 7 12 12 N 1.47482 * 87.93039 * 87.81444 * 11 10 9 13 13 C 1.46901 * 110.99764 * 138.70591 * 12 11 10 14 14 C 1.50701 * 109.46921 * 169.99672 * 13 12 11 15 15 O 1.21294 * 119.99849 * 0.02562 * 14 13 12 16 16 N 1.34780 * 119.99795 * 179.97438 * 14 13 12 17 17 C 1.37101 * 119.99707 * 180.02562 * 16 14 13 18 18 H 1.08002 * 119.99704 * 359.97438 * 17 16 14 19 19 C 1.38941 * 119.99927 * 180.02562 * 17 16 14 20 20 N 1.31413 * 120.00506 * 180.02562 * 19 17 16 21 21 Si 1.86804 * 120.00009 * 359.97438 * 19 17 16 22 22 H 1.48494 * 109.47177 * 89.99959 * 21 19 17 23 23 H 1.48505 * 109.47036 * 210.00243 * 21 19 17 24 24 H 1.48499 * 109.46776 * 329.99732 * 21 19 17 25 25 C 1.47480 * 87.83699 * 27.01095 * 12 11 10 26 26 H 1.08993 * 109.47142 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47134 * 300.00374 * 1 2 3 28 28 H 1.09007 * 109.47211 * 59.99922 * 1 2 3 29 29 H 1.09002 * 109.47492 * 239.99984 * 2 1 3 30 30 H 1.09008 * 109.47090 * 119.99536 * 2 1 3 31 31 H 1.09004 * 109.47161 * 60.00248 * 6 4 3 32 32 H 1.09003 * 109.47194 * 180.02562 * 6 4 3 33 33 H 1.08997 * 109.47350 * 300.00367 * 6 4 3 34 34 H 0.96998 * 120.00008 * 359.97438 * 9 7 4 35 35 H 1.08998 * 113.25916 * 22.04852 * 10 9 7 36 36 H 1.08994 * 113.47382 * 333.04288 * 11 10 9 37 37 H 1.09003 * 113.47448 * 202.58196 * 11 10 9 38 38 H 1.09002 * 109.47401 * 49.99700 * 13 12 11 39 39 H 1.09001 * 109.46874 * 289.99713 * 13 12 11 40 40 H 0.96995 * 120.00011 * 0.02562 * 16 14 13 41 41 H 0.96993 * 120.00255 * 180.02562 * 20 19 17 42 42 H 1.08999 * 113.47664 * 87.75895 * 25 12 11 43 43 H 1.08994 * 113.47488 * 218.22090 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.8631 0.6017 0.5147 6 6 3.9399 1.5001 -1.4417 7 6 3.8342 2.7265 0.7110 8 8 2.9856 3.5049 1.0915 9 7 5.1380 2.9940 0.9234 10 6 5.5301 4.2253 1.6135 11 6 6.8934 4.1460 2.3148 12 7 7.5112 4.5736 1.0457 13 6 8.5832 5.5491 1.2846 14 6 9.3492 5.7765 0.0068 15 8 9.0328 5.1845 -1.0035 16 7 10.3852 6.6384 -0.0135 17 6 11.0817 6.8457 -1.1761 18 1 10.8004 6.3179 -2.0754 19 6 12.1500 7.7338 -1.1970 20 7 12.8174 7.9329 -2.3114 21 14 12.6368 8.6460 0.3588 22 1 13.6383 7.8462 1.1087 23 1 13.2235 9.9617 -0.0019 24 1 11.4354 8.8554 1.2062 25 6 6.2423 5.2516 0.7211 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8901 31 1 3.5076 2.3586 -1.9559 32 1 5.0265 1.5857 -1.4413 33 1 3.6481 0.5842 -1.9555 34 1 5.8167 2.3713 0.6194 35 1 4.7350 4.6453 2.2296 36 1 7.1698 3.1349 2.6134 37 1 7.0100 4.8709 3.1205 38 1 9.2586 5.1667 2.0499 39 1 8.1493 6.4908 1.6206 40 1 10.6379 7.1121 0.7943 41 1 13.5633 8.5527 -2.3258 42 1 6.1853 6.2715 1.1014 43 1 5.9671 5.1773 -0.3309 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753370584.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:48:41 Heat of formation + Delta-G solvation = -102.136833 kcal Electronic energy + Delta-G solvation = -24031.331241 eV Core-core repulsion = 20305.126943 eV Total energy + Delta-G solvation = -3726.204298 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 299.168 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.80631 -40.61542 -39.68675 -38.58171 -35.98983 -35.11910 -33.75375 -33.30681 -31.46933 -30.64508 -27.49152 -26.93189 -25.79419 -24.71842 -23.60112 -21.73449 -21.32103 -20.85134 -20.24447 -18.41792 -18.07444 -17.76644 -17.10577 -16.86709 -16.75289 -16.47486 -16.36272 -15.90289 -15.57411 -15.14025 -14.83578 -14.64995 -14.32161 -14.26840 -14.15597 -13.69751 -13.66768 -13.37386 -13.21026 -13.04218 -12.89947 -12.61088 -12.42192 -12.34347 -12.27732 -12.03641 -11.97575 -11.81836 -11.49818 -11.01794 -10.52776 -10.43164 -10.23759 -10.12710 -9.73826 -8.40895 -6.01814 1.29855 1.35943 1.44656 1.47793 1.79645 1.98405 2.23301 2.67762 2.90493 3.14359 3.26375 3.46272 3.64265 3.77231 3.90282 3.99928 4.13086 4.20546 4.21909 4.33259 4.38468 4.45816 4.49593 4.50683 4.58303 4.63747 4.74747 4.80284 4.83256 4.88953 5.02567 5.17567 5.27600 5.32293 5.46691 5.53793 5.89193 6.00243 6.12338 6.52369 6.60667 6.89615 7.16566 7.41322 7.99881 8.76968 Molecular weight = 299.17amu Principal moments of inertia in cm(-1) A = 0.036491 B = 0.002452 C = 0.002349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.132398 B =11417.218610 C =11918.968782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.046 3.954 3 O -0.392 6.392 4 C 0.075 3.925 5 H 0.120 0.880 6 C -0.168 4.168 7 C 0.514 3.486 8 O -0.571 6.571 9 N -0.690 5.690 10 C 0.122 3.878 11 C 0.005 3.995 12 N -0.471 5.471 13 C 0.017 3.983 14 C 0.451 3.549 15 O -0.610 6.610 16 N -0.594 5.594 17 C -0.327 4.327 18 H 0.052 0.948 19 C -0.018 4.018 20 N -0.936 5.936 21 Si 0.967 3.033 22 H -0.256 1.256 23 H -0.277 1.277 24 H -0.231 1.231 25 C -0.016 4.016 26 H 0.096 0.904 27 H 0.052 0.948 28 H 0.055 0.945 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.048 0.952 32 H 0.083 0.917 33 H 0.090 0.910 34 H 0.417 0.583 35 H 0.112 0.888 36 H 0.108 0.892 37 H 0.112 0.888 38 H 0.125 0.875 39 H 0.094 0.906 40 H 0.389 0.611 41 H 0.279 0.721 42 H 0.093 0.907 43 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.622 -14.113 14.717 26.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.030 4.030 3 O -0.311 6.311 4 C 0.014 3.986 5 H 0.138 0.862 6 C -0.225 4.225 7 C 0.301 3.699 8 O -0.449 6.449 9 N -0.342 5.342 10 C 0.015 3.985 11 C -0.124 4.124 12 N -0.194 5.194 13 C -0.115 4.115 14 C 0.239 3.761 15 O -0.494 6.494 16 N -0.237 5.237 17 C -0.457 4.457 18 H 0.071 0.929 19 C -0.216 4.216 20 N -0.577 5.577 21 Si 0.787 3.213 22 H -0.180 1.180 23 H -0.202 1.202 24 H -0.154 1.154 25 C -0.147 4.147 26 H 0.114 0.886 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.067 0.933 32 H 0.102 0.898 33 H 0.109 0.891 34 H 0.254 0.746 35 H 0.130 0.870 36 H 0.126 0.874 37 H 0.130 0.870 38 H 0.143 0.857 39 H 0.112 0.888 40 H 0.225 0.775 41 H 0.088 0.912 42 H 0.110 0.890 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -18.090 -14.199 13.727 26.782 hybrid contribution 0.961 1.118 0.179 1.485 sum -17.130 -13.081 13.906 25.650 Atomic orbital electron populations 1.21769 0.93191 1.03465 1.02402 1.22847 0.96294 0.82224 1.01601 1.88031 1.19241 1.28688 1.95145 1.21941 0.83508 0.95828 0.97284 0.86243 1.22228 1.02343 1.03823 0.94136 1.20991 0.82342 0.88128 0.78477 1.90683 1.51472 1.50668 1.52083 1.45426 1.06897 1.23045 1.58874 1.21916 0.97058 0.85445 0.94051 1.24341 0.90583 1.04553 0.92887 1.68778 1.02542 1.27392 1.20716 1.22507 0.96502 0.98019 0.94426 1.20976 0.82227 0.81330 0.91545 1.90540 1.69515 1.51651 1.37706 1.42057 1.29973 1.40760 1.10876 1.18982 1.12026 1.24937 0.89715 0.92946 1.26150 0.95504 0.97972 1.02023 1.69810 1.21557 1.37181 1.29183 0.85335 0.80267 0.78132 0.77573 1.18015 1.20205 1.15377 1.24461 0.90619 0.98393 1.01189 0.88577 0.92884 0.92604 0.91435 0.91815 0.93289 0.89838 0.89143 0.74591 0.86967 0.87411 0.86997 0.85725 0.88823 0.77498 0.91201 0.88954 0.92508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 10.28 71.98 0.74 -1.18 16 2 C 0.05 0.64 6.47 71.98 0.47 1.10 16 3 O -0.39 -8.78 9.53 -129.99 -1.24 -10.02 16 4 C 0.08 1.38 3.13 29.85 0.09 1.48 16 5 H 0.12 1.34 7.79 -2.39 -0.02 1.33 16 6 C -0.17 -2.80 9.48 71.98 0.68 -2.12 16 7 C 0.51 12.62 7.18 87.66 0.63 13.25 16 8 O -0.57 -19.25 16.10 15.98 0.26 -18.99 16 9 N -0.69 -14.22 5.35 -441.70 -2.37 -16.59 16 10 C 0.12 2.55 4.59 45.45 0.21 2.76 16 11 C 0.01 0.09 7.45 83.58 0.62 0.71 16 12 N -0.47 -12.82 5.82 -932.48 -5.43 -18.25 16 13 C 0.02 0.49 5.30 85.56 0.45 0.94 16 14 C 0.45 20.21 7.85 87.66 0.69 20.90 16 15 O -0.61 -34.16 16.01 -3.07 -0.05 -34.21 16 16 N -0.59 -27.83 5.09 -306.98 -1.56 -29.39 16 17 C -0.33 -19.26 10.16 84.04 0.85 -18.40 16 18 H 0.05 3.69 7.39 -2.91 -0.02 3.67 16 19 C -0.02 -1.02 5.50 84.92 0.47 -0.55 16 20 N -0.94 -56.77 13.96 21.66 0.30 -56.47 16 21 Si 0.97 38.55 27.74 68.60 1.90 40.45 16 22 H -0.26 -9.60 7.11 99.48 0.71 -8.89 16 23 H -0.28 -11.03 7.11 99.48 0.71 -10.32 16 24 H -0.23 -7.65 6.52 99.48 0.65 -7.00 16 25 C -0.02 -0.43 7.53 83.58 0.63 0.20 16 26 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.05 0.79 8.14 -2.38 -0.02 0.77 16 29 H 0.07 0.69 7.87 -2.39 -0.02 0.67 16 30 H 0.06 0.68 8.09 -2.38 -0.02 0.66 16 31 H 0.05 1.04 8.14 -2.38 -0.02 1.03 16 32 H 0.08 1.28 7.93 -2.39 -0.02 1.26 16 33 H 0.09 1.12 7.87 -2.39 -0.02 1.10 16 34 H 0.42 7.19 8.55 -92.71 -0.79 6.40 16 35 H 0.11 2.38 7.45 -2.39 -0.02 2.36 16 36 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.11 1.28 7.91 -2.39 -0.02 1.26 16 38 H 0.12 2.74 8.08 -2.39 -0.02 2.72 16 39 H 0.09 2.13 7.30 -2.39 -0.02 2.11 16 40 H 0.39 14.89 5.76 -92.71 -0.53 14.35 16 41 H 0.28 15.41 8.31 -92.71 -0.77 14.64 16 42 H 0.09 2.13 7.42 -2.39 -0.02 2.12 16 43 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 Total: -1.00 -87.30 361.79 -2.01 -89.31 By element: Atomic # 1 Polarization: 35.42 SS G_CDS: -0.36 Total: 35.06 kcal Atomic # 6 Polarization: 12.55 SS G_CDS: 6.53 Total: 19.09 kcal Atomic # 7 Polarization: -111.64 SS G_CDS: -9.05 Total: -120.70 kcal Atomic # 8 Polarization: -62.19 SS G_CDS: -1.03 Total: -63.22 kcal Atomic # 14 Polarization: 38.55 SS G_CDS: 1.90 Total: 40.45 kcal Total: -87.30 -2.01 -89.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753370584.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.828 kcal (2) G-P(sol) polarization free energy of solvation -87.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds