Wall clock time and date at job start Fri Apr 10 2020 17:50:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38358 * 119.86776 * 2 1 4 4 C 1.37992 * 120.12031 * 180.02562 * 3 2 1 5 5 C 1.39402 * 119.87139 * 0.02562 * 4 3 2 6 6 C 1.48290 * 120.12344 * 180.27819 * 5 4 3 7 7 N 1.31343 * 126.51919 * 144.40982 * 6 5 4 8 8 N 1.39769 * 109.09739 * 179.88228 * 7 6 5 9 9 C 1.46505 * 125.15013 * 180.16287 * 8 7 6 10 10 C 1.50702 * 109.47367 * 305.26569 * 9 8 7 11 11 H 1.07996 * 119.99595 * 0.02562 * 10 9 8 12 12 C 1.37875 * 119.99680 * 180.02562 * 10 9 8 13 13 N 1.31507 * 120.00598 * 359.97438 * 12 10 9 14 14 Si 1.86807 * 119.99432 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47133 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.47057 * 120.00024 * 14 12 10 17 17 H 1.48501 * 109.46874 * 239.99622 * 14 12 10 18 18 C 1.34120 * 109.69656 * 0.39425 * 8 7 6 19 19 C 1.38045 * 107.87748 * 359.76999 * 18 8 7 20 20 C 1.47141 * 126.82031 * 180.02562 * 19 18 8 21 21 O 1.21538 * 119.99995 * 179.97438 * 20 19 18 22 22 O 1.34774 * 119.99902 * 359.97438 * 20 19 18 23 23 C 1.39365 * 119.75300 * 359.97438 * 5 4 3 24 24 C 1.38023 * 119.87310 * 0.02562 * 23 5 4 25 25 C 1.50699 * 119.94030 * 180.02562 * 24 23 5 26 26 H 1.08995 * 109.47729 * 269.98122 * 1 2 3 27 27 H 1.08995 * 109.46966 * 29.98670 * 1 2 3 28 28 H 1.09003 * 109.46542 * 149.97743 * 1 2 3 29 29 H 1.07990 * 119.93947 * 0.02562 * 3 2 1 30 30 H 1.07995 * 120.05992 * 180.02562 * 4 3 2 31 31 H 1.09000 * 109.46676 * 65.26543 * 9 8 7 32 32 H 1.08995 * 109.47008 * 185.26534 * 9 8 7 33 33 H 0.96993 * 120.00374 * 180.02562 * 13 12 10 34 34 H 1.07998 * 126.06095 * 179.73055 * 18 8 7 35 35 H 0.96701 * 117.00107 * 179.97438 * 22 20 19 36 36 H 1.08005 * 120.06159 * 179.97438 * 23 5 4 37 37 H 1.08997 * 109.47017 * 89.99740 * 25 24 23 38 38 H 1.09000 * 109.47358 * 209.99832 * 25 24 23 39 39 H 1.08997 * 109.46752 * 330.00127 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1961 1.1998 0.0000 4 6 3.5760 1.2059 -0.0005 5 6 4.2756 0.0001 -0.0016 6 6 5.7585 0.0001 0.0040 7 7 6.5378 -0.8601 0.6186 8 7 7.8723 -0.5206 0.3790 9 6 9.0337 -1.2488 0.8960 10 6 8.9313 -1.3584 2.3955 11 1 8.0854 -0.9291 2.9117 12 6 9.9175 -2.0069 3.1082 13 7 10.9472 -2.5301 2.4795 14 14 9.7901 -2.1434 4.9669 15 1 8.5453 -1.4778 5.4279 16 1 9.7598 -3.5759 5.3571 17 1 10.9644 -1.4846 5.5932 18 6 7.9285 0.5756 -0.3916 19 6 6.6336 0.9644 -0.6705 20 6 6.2146 2.1171 -1.4834 21 8 5.0326 2.3459 -1.6498 22 8 7.1417 2.9191 -2.0436 23 6 3.5762 -1.2053 -0.0016 24 6 2.1960 -1.1993 -0.0011 25 6 1.4381 -2.5019 -0.0005 26 1 -0.3634 -0.0003 1.0276 27 1 -0.3633 0.8901 -0.5136 28 1 -0.3632 -0.8898 -0.5142 29 1 1.6530 2.1332 0.0004 30 1 4.1128 2.1430 -0.0001 31 1 9.0602 -2.2473 0.4596 32 1 9.9454 -0.7127 0.6323 33 1 11.6408 -2.9866 2.9808 34 1 8.8274 1.0674 -0.7329 35 1 6.8183 3.6635 -2.5693 36 1 4.1132 -2.1424 -0.0029 37 1 1.2559 -2.8157 1.0273 38 1 0.4859 -2.3685 -0.5139 39 1 2.0245 -3.2635 -0.5143 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000003410584.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:50:41 Heat of formation + Delta-G solvation = -23.096947 kcal Electronic energy + Delta-G solvation = -23362.316864 eV Core-core repulsion = 19849.130250 eV Total energy + Delta-G solvation = -3513.186614 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 300.126 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.21041 -40.53082 -40.27571 -36.91866 -35.87246 -34.75422 -33.34431 -32.75970 -31.62763 -29.46046 -28.28545 -27.30776 -25.50895 -24.33574 -23.14330 -22.28172 -21.66685 -20.19750 -18.84058 -18.69140 -18.42953 -16.97656 -16.88986 -16.66067 -16.47188 -16.18343 -15.72078 -15.54692 -15.12008 -14.72431 -14.31212 -14.14375 -14.08864 -13.95032 -13.54629 -13.50935 -13.38764 -13.07049 -12.79437 -12.73269 -12.62844 -12.38714 -12.36384 -12.12513 -11.96434 -11.72648 -11.58551 -11.25188 -10.81100 -10.65594 -9.80945 -9.59098 -9.10397 -8.39541 -6.52645 0.01391 0.48224 0.53609 1.27678 1.34677 1.37658 1.47949 1.56569 2.19384 2.31115 2.32840 2.88034 2.94452 3.41816 3.55070 3.95953 4.00234 4.11028 4.20232 4.33608 4.38827 4.48205 4.66804 4.76083 4.80437 4.83865 4.88415 4.91536 4.93925 5.02979 5.07064 5.21536 5.28484 5.41783 5.50139 5.58334 5.67098 5.73062 5.76487 5.77916 5.96702 6.13821 6.54499 6.70190 7.17575 7.19318 8.69214 Molecular weight = 300.13amu Principal moments of inertia in cm(-1) A = 0.012833 B = 0.004365 C = 0.003496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2181.388533 B = 6413.826742 C = 8007.058397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.078 4.078 3 C -0.130 4.130 4 C -0.072 4.072 5 C -0.048 4.048 6 C 0.144 3.856 7 N -0.307 5.307 8 N -0.333 5.333 9 C 0.263 3.737 10 C -0.551 4.551 11 H 0.051 0.949 12 C 0.025 3.975 13 N -0.916 5.916 14 Si 0.968 3.032 15 H -0.277 1.277 16 H -0.273 1.273 17 H -0.267 1.267 18 C 0.138 3.862 19 C -0.318 4.318 20 C 0.571 3.429 21 O -0.539 6.539 22 O -0.506 6.506 23 C -0.102 4.102 24 C -0.106 4.106 25 C -0.111 4.111 26 H 0.082 0.918 27 H 0.078 0.922 28 H 0.083 0.917 29 H 0.146 0.854 30 H 0.130 0.870 31 H 0.030 0.970 32 H 0.070 0.930 33 H 0.274 0.726 34 H 0.222 0.778 35 H 0.431 0.569 36 H 0.111 0.889 37 H 0.077 0.923 38 H 0.092 0.908 39 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.187 7.747 -7.753 18.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.079 4.079 3 C -0.148 4.148 4 C -0.091 4.091 5 C -0.050 4.050 6 C -0.023 4.023 7 N -0.127 5.127 8 N -0.108 5.108 9 C 0.145 3.855 10 C -0.589 4.589 11 H 0.069 0.931 12 C -0.176 4.176 13 N -0.554 5.554 14 Si 0.792 3.208 15 H -0.202 1.202 16 H -0.199 1.199 17 H -0.192 1.192 18 C -0.015 4.015 19 C -0.332 4.332 20 C 0.418 3.582 21 O -0.432 6.432 22 O -0.320 6.320 23 C -0.121 4.121 24 C -0.106 4.106 25 C -0.167 4.167 26 H 0.100 0.900 27 H 0.097 0.903 28 H 0.102 0.898 29 H 0.164 0.836 30 H 0.148 0.852 31 H 0.048 0.952 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.239 0.761 35 H 0.293 0.707 36 H 0.129 0.871 37 H 0.095 0.905 38 H 0.111 0.889 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -14.929 6.213 -6.734 17.517 hybrid contribution 0.675 0.816 0.081 1.062 sum -14.255 7.029 -6.653 17.230 Atomic orbital electron populations 1.20932 0.88478 1.04101 1.03393 1.20262 0.97908 0.91853 0.97864 1.21197 0.93030 0.98820 1.01746 1.21464 0.94873 0.96940 0.95868 1.17858 0.86691 0.95049 1.05445 1.22249 0.93797 0.91930 0.94350 1.77428 0.87935 1.24160 1.23144 1.49080 1.05815 1.20895 1.35014 1.19603 0.79217 0.92007 0.94694 1.21356 1.07830 1.38218 0.91529 0.93091 1.25643 0.94262 0.93975 1.03756 1.69968 1.10900 1.36616 1.37964 0.85353 0.78216 0.78273 0.78922 1.20220 1.19863 1.19240 1.23736 0.99907 0.87568 0.90319 1.20332 0.92069 1.03848 1.16948 1.19294 0.82918 0.80197 0.75800 1.90825 1.18859 1.72956 1.60520 1.84526 1.41165 1.42133 1.64180 1.21136 0.94630 0.96527 0.99854 1.19934 0.92368 0.96897 1.01365 1.20874 1.00362 0.92406 1.03089 0.89961 0.90314 0.89806 0.83596 0.85231 0.95182 0.91216 0.91675 0.76131 0.70722 0.87076 0.90479 0.88933 0.91854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.74 9.60 71.24 0.68 -1.06 16 2 C -0.08 -1.92 5.88 -19.82 -0.12 -2.03 16 3 C -0.13 -3.52 9.68 22.24 0.22 -3.30 16 4 C -0.07 -2.43 7.78 22.49 0.18 -2.25 16 5 C -0.05 -1.83 5.73 -20.05 -0.11 -1.95 16 6 C 0.14 6.06 6.94 44.09 0.31 6.36 16 7 N -0.31 -14.50 12.27 -44.50 -0.55 -15.04 16 8 N -0.33 -14.93 3.62 -350.13 -1.27 -16.19 16 9 C 0.26 12.96 6.21 85.63 0.53 13.49 16 10 C -0.55 -30.32 9.20 25.60 0.24 -30.08 16 11 H 0.05 2.96 7.81 -2.91 -0.02 2.94 16 12 C 0.02 1.34 5.46 84.66 0.46 1.80 16 13 N -0.92 -50.37 13.29 21.45 0.28 -50.09 16 14 Si 0.97 43.05 29.54 68.60 2.03 45.07 16 15 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 16 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 17 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 18 C 0.14 5.02 11.23 84.30 0.95 5.97 16 19 C -0.32 -11.79 6.26 -18.79 -0.12 -11.91 16 20 C 0.57 17.76 8.19 70.16 0.57 18.33 16 21 O -0.54 -18.15 13.25 19.71 0.26 -17.89 16 22 O -0.51 -11.17 13.27 -56.86 -0.75 -11.93 16 23 C -0.10 -3.53 9.41 22.49 0.21 -3.32 16 24 C -0.11 -2.90 5.87 -19.90 -0.12 -3.01 16 25 C -0.11 -2.22 9.60 71.24 0.68 -1.53 16 26 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.08 1.01 8.08 -2.39 -0.02 0.99 16 28 H 0.08 1.06 5.93 -2.39 -0.01 1.04 16 29 H 0.15 3.08 8.06 -2.92 -0.02 3.05 16 30 H 0.13 4.48 5.66 -2.91 -0.02 4.47 16 31 H 0.03 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.07 3.27 8.05 -2.39 -0.02 3.25 16 33 H 0.27 14.08 8.31 -92.71 -0.77 13.31 16 34 H 0.22 6.03 8.06 -2.91 -0.02 6.01 16 35 H 0.43 4.89 9.11 -74.06 -0.67 4.22 16 36 H 0.11 4.01 8.06 -2.91 -0.02 3.99 16 37 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.09 1.36 5.93 -2.39 -0.01 1.35 16 39 H 0.06 1.28 8.08 -2.39 -0.02 1.26 16 Total: -1.00 -69.13 339.16 4.98 -64.14 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: 0.42 Total: 16.43 kcal Atomic # 6 Polarization: -19.06 SS G_CDS: 4.56 Total: -14.50 kcal Atomic # 7 Polarization: -79.80 SS G_CDS: -1.53 Total: -81.32 kcal Atomic # 8 Polarization: -29.33 SS G_CDS: -0.49 Total: -29.82 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.07 kcal Total: -69.13 4.98 -64.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003410584.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.047 kcal (2) G-P(sol) polarization free energy of solvation -69.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds