Wall clock time and date at job start Fri Apr 10 2020 17:52:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31250 * 1 3 3 Si 1.86794 * 120.00667 * 2 1 4 4 H 1.48496 * 109.47503 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46746 * 299.99971 * 3 2 1 6 6 H 1.48497 * 109.47098 * 59.99648 * 3 2 1 7 7 C 1.39224 * 119.99585 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00130 * 186.64877 * 7 2 1 9 9 N 1.36608 * 119.99762 * 6.64471 * 7 2 1 10 10 C 1.34773 * 120.00415 * 44.98469 * 9 7 2 11 11 O 1.21634 * 119.99864 * 5.20557 * 10 9 7 12 12 C 1.47325 * 120.00489 * 185.21276 * 10 9 7 13 13 N 1.29178 * 125.86871 * 354.35122 * 12 10 9 14 14 O 1.41391 * 112.85491 * 180.35021 * 13 12 10 15 15 C 1.44206 * 107.59861 * 342.50240 * 14 13 12 16 16 H 1.09003 * 110.96948 * 267.26581 * 15 14 13 17 17 C 1.50704 * 110.97061 * 143.54072 * 15 14 13 18 18 C 1.38237 * 119.99609 * 329.21383 * 17 15 14 19 19 C 1.38238 * 119.99626 * 179.76683 * 18 17 15 20 20 C 1.38237 * 119.99815 * 0.49078 * 19 18 17 21 21 C 1.38227 * 120.00011 * 359.78563 * 20 19 18 22 22 C 1.38226 * 120.00019 * 149.49058 * 17 15 14 23 23 C 1.51752 * 125.86191 * 174.36090 * 12 10 9 24 24 C 1.46506 * 119.99659 * 224.97900 * 9 7 2 25 25 C 1.53000 * 117.50090 * 2.27990 * 24 9 7 26 26 C 1.53001 * 117.49852 * 293.61924 * 24 9 7 27 27 H 0.97007 * 119.99506 * 4.99752 * 1 2 3 28 28 H 1.08001 * 120.00161 * 359.97438 * 18 17 15 29 29 H 1.08005 * 119.99829 * 180.25473 * 19 18 17 30 30 H 1.08001 * 119.99801 * 179.76550 * 20 19 18 31 31 H 1.08006 * 120.00139 * 179.97438 * 21 20 19 32 32 H 1.07999 * 120.00577 * 0.02562 * 22 17 15 33 33 H 1.08996 * 110.78676 * 77.10294 * 23 12 10 34 34 H 1.09006 * 110.82024 * 313.61169 * 23 12 10 35 35 H 1.09002 * 115.54821 * 147.95359 * 24 9 7 36 36 H 1.08994 * 117.49610 * 359.97438 * 25 24 9 37 37 H 1.09000 * 117.49515 * 145.01942 * 25 24 9 38 38 H 1.09002 * 117.49402 * 214.98409 * 26 24 9 39 39 H 1.09001 * 117.49782 * 359.97438 * 26 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3125 0.0000 0.0000 3 14 2.2467 1.6176 0.0000 4 1 3.7066 1.3462 -0.0006 5 1 1.8879 2.3963 -1.2126 6 1 1.8879 2.3963 1.2124 7 6 2.0085 -1.2058 0.0005 8 1 3.0831 -1.2090 0.1088 9 7 1.3322 -2.3848 -0.1358 10 6 0.3688 -2.5050 -1.0706 11 8 0.1659 -1.5976 -1.8548 12 6 -0.4386 -3.7351 -1.1425 13 7 -0.2549 -4.8033 -0.4397 14 8 -1.1871 -5.8238 -0.7375 15 6 -2.2955 -5.2134 -1.4293 16 1 -3.0814 -4.9270 -0.7304 17 6 -2.8350 -6.1295 -2.4974 18 6 -1.9888 -7.0106 -3.1443 19 6 -2.4846 -7.8542 -4.1207 20 6 -3.8247 -7.8096 -4.4572 21 6 -4.6696 -6.9246 -3.8143 22 6 -4.1749 -6.0847 -2.8342 23 6 -1.6290 -3.9651 -2.0552 24 6 1.6544 -3.5188 0.7340 25 6 2.7202 -3.3032 1.8103 26 6 3.0363 -4.1572 0.5799 27 1 -0.4850 0.8370 -0.0732 28 1 -0.9409 -7.0421 -2.8846 29 1 -1.8243 -8.5455 -4.6233 30 1 -4.2113 -8.4661 -5.2227 31 1 -5.7166 -6.8895 -4.0775 32 1 -4.8351 -5.3929 -2.3322 33 1 -1.3012 -4.1714 -3.0740 34 1 -2.3066 -3.1115 -2.0308 35 1 0.8201 -4.1771 0.9766 36 1 3.1820 -2.3178 1.8709 37 1 2.5873 -3.8199 2.7608 38 1 3.1111 -5.2354 0.7214 39 1 3.7056 -3.7338 -0.1690 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049425860.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:16 Heat of formation + Delta-G solvation = 68.364354 kcal Electronic energy + Delta-G solvation = -23986.271894 eV Core-core repulsion = 20477.051340 eV Total energy + Delta-G solvation = -3509.220554 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 300.126 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.26207 -38.94377 -38.11349 -36.04642 -33.11391 -32.79779 -32.13609 -30.96611 -30.89609 -28.72752 -25.61323 -23.93404 -22.80369 -22.59710 -21.61606 -21.00692 -20.81876 -19.11182 -17.26590 -16.96917 -16.18096 -15.88516 -15.62731 -15.11512 -14.72798 -14.49541 -14.16238 -13.90750 -13.61693 -13.44115 -13.36239 -13.06913 -12.71444 -12.54460 -12.21918 -11.92476 -11.58697 -11.33429 -11.13736 -11.10647 -11.03265 -10.89034 -10.69948 -10.45229 -10.22316 -9.98172 -9.46649 -9.09582 -8.99866 -8.94431 -8.77771 -8.39870 -7.21918 -6.25355 -4.09406 1.19964 1.32544 1.83410 3.21606 3.27713 3.31220 3.40399 3.73898 4.02109 4.31466 4.42236 4.64946 4.75566 4.80361 4.82634 4.95140 4.98277 5.06939 5.11175 5.21591 5.30673 5.43270 5.53520 5.73476 5.81850 5.82922 5.88102 5.98432 6.00603 6.05792 6.20730 6.30356 6.35512 6.42344 6.53441 6.56434 6.88530 6.89332 7.00659 7.43296 7.68453 8.07589 8.82376 8.94167 9.38935 10.04185 10.77630 Molecular weight = 300.13amu Principal moments of inertia in cm(-1) A = 0.022754 B = 0.003948 C = 0.003549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.238892 B = 7090.907492 C = 7887.854471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.058 3.942 3 Si 0.920 3.080 4 H -0.268 1.268 5 H -0.279 1.279 6 H -0.282 1.282 7 C -0.328 4.328 8 H 0.088 0.912 9 N -0.396 5.396 10 C 0.524 3.476 11 O -0.514 6.514 12 C 0.093 3.907 13 N -0.278 5.278 14 O -0.210 6.210 15 C 0.083 3.917 16 H 0.093 0.907 17 C -0.080 4.080 18 C -0.094 4.094 19 C -0.122 4.122 20 C -0.121 4.121 21 C -0.122 4.122 22 C -0.107 4.107 23 C -0.123 4.123 24 C 0.061 3.939 25 C -0.176 4.176 26 C -0.198 4.198 27 H 0.269 0.731 28 H 0.128 0.872 29 H 0.123 0.877 30 H 0.121 0.879 31 H 0.123 0.877 32 H 0.124 0.876 33 H 0.101 0.899 34 H 0.108 0.892 35 H 0.136 0.864 36 H 0.105 0.895 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.885 -11.695 -4.093 13.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.154 4.154 3 Si 0.747 3.253 4 H -0.193 1.193 5 H -0.205 1.205 6 H -0.208 1.208 7 C -0.456 4.456 8 H 0.106 0.894 9 N -0.116 5.116 10 C 0.310 3.690 11 O -0.390 6.390 12 C -0.100 4.100 13 N -0.028 5.028 14 O -0.225 6.225 15 C 0.024 3.976 16 H 0.110 0.890 17 C -0.081 4.081 18 C -0.113 4.113 19 C -0.140 4.140 20 C -0.139 4.139 21 C -0.140 4.140 22 C -0.125 4.125 23 C -0.163 4.163 24 C -0.045 4.045 25 C -0.214 4.214 26 C -0.237 4.237 27 H 0.080 0.920 28 H 0.146 0.854 29 H 0.141 0.859 30 H 0.139 0.861 31 H 0.141 0.859 32 H 0.142 0.858 33 H 0.120 0.880 34 H 0.126 0.874 35 H 0.152 0.848 36 H 0.124 0.876 37 H 0.104 0.896 38 H 0.105 0.895 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -5.583 -11.796 -3.662 13.555 hybrid contribution -0.343 1.091 -0.543 1.267 sum -5.925 -10.705 -4.205 12.938 Atomic orbital electron populations 1.69781 1.06554 1.28114 1.40973 1.25425 0.95143 0.99744 0.95066 0.85994 0.79698 0.81869 0.77768 1.19280 1.20472 1.20776 1.19138 0.91449 0.82081 1.52926 0.89446 1.42585 1.32520 1.10038 1.26421 1.16550 0.84573 0.83910 0.83984 1.90665 1.68737 1.38619 1.40942 1.26845 0.95993 0.95478 0.91640 1.78657 1.09442 0.98043 1.16681 1.91213 1.28030 1.27593 1.75648 1.22404 0.91504 0.91240 0.92410 0.88954 1.19620 0.93939 0.97599 0.96954 1.21077 1.00325 0.94797 0.95053 1.21166 0.95649 0.99323 0.97823 1.21172 0.93871 0.98980 0.99857 1.21080 0.99765 0.96388 0.96787 1.20956 0.94347 0.99188 0.98043 1.22811 0.94913 0.98001 1.00566 1.22459 0.92743 0.92705 0.96572 1.23127 1.03961 1.01761 0.92556 1.23233 1.01178 0.98111 1.01143 0.92040 0.85426 0.85936 0.86145 0.85922 0.85753 0.88042 0.87353 0.84767 0.87633 0.89592 0.89486 0.89283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -23.34 11.13 55.51 0.62 -22.73 16 2 C 0.06 1.56 4.75 -17.43 -0.08 1.47 16 3 Si 0.92 20.74 29.56 -169.99 -5.03 15.72 16 4 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 5 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 6 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.33 -8.70 7.93 -15.06 -0.12 -8.82 16 8 H 0.09 2.22 7.19 -52.49 -0.38 1.84 16 9 N -0.40 -10.04 2.84 -108.99 -0.31 -10.35 16 10 C 0.52 13.51 6.76 -12.57 -0.08 13.42 16 11 O -0.51 -14.82 14.64 5.25 0.08 -14.74 16 12 C 0.09 2.00 7.07 -79.49 -0.56 1.44 16 13 N -0.28 -5.64 8.89 35.26 0.31 -5.33 16 14 O -0.21 -3.84 11.34 -11.37 -0.13 -3.97 16 15 C 0.08 1.30 4.01 -26.97 -0.11 1.19 16 16 H 0.09 1.33 8.10 -51.93 -0.42 0.91 16 17 C -0.08 -1.09 5.02 -104.62 -0.52 -1.62 16 18 C -0.09 -1.26 9.39 -39.58 -0.37 -1.63 16 19 C -0.12 -1.35 10.05 -39.58 -0.40 -1.74 16 20 C -0.12 -1.21 10.05 -39.59 -0.40 -1.60 16 21 C -0.12 -1.24 10.05 -39.59 -0.40 -1.64 16 22 C -0.11 -1.24 9.71 -39.59 -0.38 -1.63 16 23 C -0.12 -2.16 6.44 -26.45 -0.17 -2.33 16 24 C 0.06 1.30 5.47 -67.93 -0.37 0.93 16 25 C -0.18 -3.29 9.80 -26.69 -0.26 -3.56 16 26 C -0.20 -3.64 10.37 -26.69 -0.28 -3.92 16 27 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 28 H 0.13 1.78 7.57 -52.49 -0.40 1.38 16 29 H 0.12 1.09 8.06 -52.48 -0.42 0.67 16 30 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 31 H 0.12 0.94 8.06 -52.48 -0.42 0.52 16 32 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 33 H 0.10 1.69 7.90 -51.93 -0.41 1.28 16 34 H 0.11 1.85 8.14 -51.93 -0.42 1.43 16 35 H 0.14 2.88 5.33 -51.93 -0.28 2.60 16 36 H 0.11 2.08 6.71 -51.93 -0.35 1.73 16 37 H 0.09 1.39 8.14 -51.93 -0.42 0.96 16 38 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 39 H 0.09 1.69 8.14 -51.93 -0.42 1.27 16 LS Contribution 332.51 15.07 5.01 5.01 Total: -1.00 -31.14 332.51 -8.71 -39.84 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: -4.75 Total: 6.57 kcal Atomic # 6 Polarization: -5.51 SS G_CDS: -4.51 Total: -10.02 kcal Atomic # 7 Polarization: -39.02 SS G_CDS: 0.62 Total: -38.40 kcal Atomic # 8 Polarization: -18.66 SS G_CDS: -0.05 Total: -18.72 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.03 Total: 15.72 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.14 -8.71 -39.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049425860.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.207 kcal (2) G-P(sol) polarization free energy of solvation -31.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.843 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds