Wall clock time and date at job start Fri Apr 10 2020 17:52:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31250 * 1 3 3 Si 1.86794 * 120.00667 * 2 1 4 4 H 1.48496 * 109.47503 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46746 * 299.99971 * 3 2 1 6 6 H 1.48497 * 109.47098 * 59.99648 * 3 2 1 7 7 C 1.39224 * 119.99585 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00130 * 186.64877 * 7 2 1 9 9 N 1.36608 * 119.99762 * 6.64471 * 7 2 1 10 10 C 1.34773 * 120.00415 * 44.98469 * 9 7 2 11 11 O 1.21634 * 119.99864 * 5.20557 * 10 9 7 12 12 C 1.47325 * 120.00489 * 185.21276 * 10 9 7 13 13 N 1.29178 * 125.86871 * 354.35122 * 12 10 9 14 14 O 1.41391 * 112.85491 * 180.35021 * 13 12 10 15 15 C 1.44206 * 107.59861 * 342.50240 * 14 13 12 16 16 H 1.09003 * 110.96948 * 267.26581 * 15 14 13 17 17 C 1.50704 * 110.97061 * 143.54072 * 15 14 13 18 18 C 1.38237 * 119.99609 * 329.21383 * 17 15 14 19 19 C 1.38238 * 119.99626 * 179.76683 * 18 17 15 20 20 C 1.38237 * 119.99815 * 0.49078 * 19 18 17 21 21 C 1.38227 * 120.00011 * 359.78563 * 20 19 18 22 22 C 1.38226 * 120.00019 * 149.49058 * 17 15 14 23 23 C 1.51752 * 125.86191 * 174.36090 * 12 10 9 24 24 C 1.46506 * 119.99659 * 224.97900 * 9 7 2 25 25 C 1.53000 * 117.50090 * 2.27990 * 24 9 7 26 26 C 1.53001 * 117.49852 * 293.61924 * 24 9 7 27 27 H 0.97007 * 119.99506 * 4.99752 * 1 2 3 28 28 H 1.08001 * 120.00161 * 359.97438 * 18 17 15 29 29 H 1.08005 * 119.99829 * 180.25473 * 19 18 17 30 30 H 1.08001 * 119.99801 * 179.76550 * 20 19 18 31 31 H 1.08006 * 120.00139 * 179.97438 * 21 20 19 32 32 H 1.07999 * 120.00577 * 0.02562 * 22 17 15 33 33 H 1.08996 * 110.78676 * 77.10294 * 23 12 10 34 34 H 1.09006 * 110.82024 * 313.61169 * 23 12 10 35 35 H 1.09002 * 115.54821 * 147.95359 * 24 9 7 36 36 H 1.08994 * 117.49610 * 359.97438 * 25 24 9 37 37 H 1.09000 * 117.49515 * 145.01942 * 25 24 9 38 38 H 1.09002 * 117.49402 * 214.98409 * 26 24 9 39 39 H 1.09001 * 117.49782 * 359.97438 * 26 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3125 0.0000 0.0000 3 14 2.2467 1.6176 0.0000 4 1 3.7066 1.3462 -0.0006 5 1 1.8879 2.3963 -1.2126 6 1 1.8879 2.3963 1.2124 7 6 2.0085 -1.2058 0.0005 8 1 3.0831 -1.2090 0.1088 9 7 1.3322 -2.3848 -0.1358 10 6 0.3688 -2.5050 -1.0706 11 8 0.1659 -1.5976 -1.8548 12 6 -0.4386 -3.7351 -1.1425 13 7 -0.2549 -4.8033 -0.4397 14 8 -1.1871 -5.8238 -0.7375 15 6 -2.2955 -5.2134 -1.4293 16 1 -3.0814 -4.9270 -0.7304 17 6 -2.8350 -6.1295 -2.4974 18 6 -1.9888 -7.0106 -3.1443 19 6 -2.4846 -7.8542 -4.1207 20 6 -3.8247 -7.8096 -4.4572 21 6 -4.6696 -6.9246 -3.8143 22 6 -4.1749 -6.0847 -2.8342 23 6 -1.6290 -3.9651 -2.0552 24 6 1.6544 -3.5188 0.7340 25 6 2.7202 -3.3032 1.8103 26 6 3.0363 -4.1572 0.5799 27 1 -0.4850 0.8370 -0.0732 28 1 -0.9409 -7.0421 -2.8846 29 1 -1.8243 -8.5455 -4.6233 30 1 -4.2113 -8.4661 -5.2227 31 1 -5.7166 -6.8895 -4.0775 32 1 -4.8351 -5.3929 -2.3322 33 1 -1.3012 -4.1714 -3.0740 34 1 -2.3066 -3.1115 -2.0308 35 1 0.8201 -4.1771 0.9766 36 1 3.1820 -2.3178 1.8709 37 1 2.5873 -3.8199 2.7608 38 1 3.1111 -5.2354 0.7214 39 1 3.7056 -3.7338 -0.1690 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049425860.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:52:16 Heat of formation + Delta-G solvation = 51.180705 kcal Electronic energy + Delta-G solvation = -23987.017033 eV Core-core repulsion = 20477.051340 eV Total energy + Delta-G solvation = -3509.965693 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 300.126 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.69031 -40.37993 -39.48643 -37.83884 -34.99407 -34.29024 -33.44217 -32.78788 -31.81203 -29.94903 -27.56763 -25.21281 -24.48360 -23.50877 -23.12612 -22.59757 -22.02816 -20.90209 -18.75884 -18.20252 -17.96104 -17.21421 -17.20019 -16.64676 -15.99660 -15.86500 -15.73581 -15.41260 -15.17590 -14.95027 -14.38151 -14.28286 -14.23135 -13.85015 -13.76280 -13.44048 -13.07792 -12.98242 -12.88418 -12.68750 -12.29633 -12.21070 -12.01885 -11.96009 -11.88111 -11.69817 -11.09860 -10.88152 -10.58392 -10.36157 -9.85752 -9.72968 -9.15863 -8.25603 -6.15975 0.12497 0.30745 0.46746 1.40893 1.44903 1.55374 1.91880 2.26749 2.50705 2.69265 2.81257 3.04477 3.30049 3.33418 3.43973 3.57315 3.72554 3.84530 4.09486 4.12169 4.15265 4.28192 4.29152 4.42698 4.44129 4.53418 4.60700 4.64045 4.75661 4.84323 4.99793 5.04033 5.13323 5.31523 5.37804 5.44040 5.52088 5.58504 5.60445 6.03132 6.05856 6.17048 6.84140 6.98878 7.43095 8.08636 8.77438 Molecular weight = 300.13amu Principal moments of inertia in cm(-1) A = 0.022754 B = 0.003948 C = 0.003549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.238892 B = 7090.907492 C = 7887.854471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.008 3.992 3 Si 0.986 3.014 4 H -0.254 1.254 5 H -0.287 1.287 6 H -0.273 1.273 7 C -0.346 4.346 8 H 0.093 0.907 9 N -0.408 5.408 10 C 0.512 3.488 11 O -0.559 6.559 12 C 0.076 3.924 13 N -0.272 5.272 14 O -0.208 6.208 15 C 0.091 3.909 16 H 0.105 0.895 17 C -0.101 4.101 18 C -0.115 4.115 19 C -0.126 4.126 20 C -0.116 4.116 21 C -0.121 4.121 22 C -0.113 4.113 23 C -0.116 4.116 24 C 0.026 3.974 25 C -0.162 4.162 26 C -0.176 4.176 27 H 0.266 0.734 28 H 0.111 0.889 29 H 0.142 0.858 30 H 0.152 0.848 31 H 0.153 0.847 32 H 0.139 0.861 33 H 0.105 0.895 34 H 0.107 0.893 35 H 0.134 0.866 36 H 0.093 0.907 37 H 0.117 0.883 38 H 0.115 0.885 39 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.451 -13.466 -4.344 15.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.199 4.199 3 Si 0.809 3.191 4 H -0.177 1.177 5 H -0.214 1.214 6 H -0.198 1.198 7 C -0.474 4.474 8 H 0.110 0.890 9 N -0.127 5.127 10 C 0.300 3.700 11 O -0.438 6.438 12 C -0.117 4.117 13 N -0.020 5.020 14 O -0.226 6.226 15 C 0.032 3.968 16 H 0.123 0.877 17 C -0.102 4.102 18 C -0.134 4.134 19 C -0.144 4.144 20 C -0.134 4.134 21 C -0.138 4.138 22 C -0.131 4.131 23 C -0.156 4.156 24 C -0.078 4.078 25 C -0.200 4.200 26 C -0.214 4.214 27 H 0.076 0.924 28 H 0.129 0.871 29 H 0.160 0.840 30 H 0.170 0.830 31 H 0.170 0.830 32 H 0.157 0.843 33 H 0.124 0.876 34 H 0.126 0.874 35 H 0.151 0.849 36 H 0.111 0.889 37 H 0.135 0.865 38 H 0.133 0.867 39 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -6.110 -13.590 -3.875 15.396 hybrid contribution -0.220 1.440 -0.497 1.539 sum -6.330 -12.150 -4.372 14.380 Atomic orbital electron populations 1.69902 1.08125 1.28594 1.42910 1.26341 0.95884 1.03149 0.94532 0.85006 0.79124 0.77486 0.77460 1.17708 1.21365 1.19787 1.19432 0.91907 0.83009 1.53050 0.88972 1.42812 1.32346 1.10777 1.26779 1.17064 0.84811 0.84661 0.83476 1.90608 1.70092 1.40544 1.42544 1.26445 0.97285 0.94478 0.93508 1.78585 1.09804 0.97876 1.15711 1.91185 1.28643 1.26810 1.75932 1.22539 0.90565 0.90648 0.93017 0.87721 1.19531 0.95096 0.98260 0.97308 1.21092 0.99703 0.96090 0.96470 1.21430 0.96785 0.99027 0.97147 1.21592 0.93220 0.98747 0.99805 1.21479 1.01326 0.95354 0.95686 1.21199 0.93558 0.99766 0.98538 1.22813 0.93612 0.99004 1.00175 1.22611 0.94215 0.92557 0.98464 1.23203 1.01538 1.01619 0.93614 1.23250 0.98111 0.99583 1.00482 0.92402 0.87071 0.84023 0.83042 0.82951 0.84282 0.87637 0.87419 0.84907 0.88859 0.86524 0.86660 0.90157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -50.78 11.13 21.71 0.24 -50.54 16 2 C 0.01 0.45 4.75 85.02 0.40 0.85 16 3 Si 0.99 43.39 29.56 68.60 2.03 45.41 16 4 H -0.25 -10.39 7.11 99.48 0.71 -9.68 16 5 H -0.29 -12.93 7.11 99.48 0.71 -12.23 16 6 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 7 C -0.35 -18.80 7.93 84.19 0.67 -18.13 16 8 H 0.09 4.75 7.19 -2.91 -0.02 4.73 16 9 N -0.41 -21.26 2.84 -616.98 -1.76 -23.02 16 10 C 0.51 27.51 6.76 86.63 0.59 28.10 16 11 O -0.56 -33.80 14.64 -4.14 -0.06 -33.86 16 12 C 0.08 3.35 7.07 45.68 0.32 3.67 16 13 N -0.27 -11.13 8.89 -42.37 -0.38 -11.51 16 14 O -0.21 -7.58 11.34 -38.32 -0.43 -8.01 16 15 C 0.09 2.80 4.01 30.44 0.12 2.92 16 16 H 0.11 2.95 8.10 -2.39 -0.02 2.93 16 17 C -0.10 -2.66 5.02 -19.87 -0.10 -2.76 16 18 C -0.12 -2.99 9.39 22.27 0.21 -2.78 16 19 C -0.13 -2.52 10.05 22.27 0.22 -2.30 16 20 C -0.12 -1.91 10.05 22.27 0.22 -1.69 16 21 C -0.12 -2.04 10.05 22.27 0.22 -1.82 16 22 C -0.11 -2.37 9.71 22.27 0.22 -2.15 16 23 C -0.12 -4.17 6.44 30.78 0.20 -3.97 16 24 C 0.03 1.13 5.47 44.99 0.25 1.37 16 25 C -0.16 -5.85 9.80 30.62 0.30 -5.55 16 26 C -0.18 -6.23 10.37 30.62 0.32 -5.91 16 27 H 0.27 14.99 8.31 -92.70 -0.77 14.22 16 28 H 0.11 3.15 7.57 -2.91 -0.02 3.13 16 29 H 0.14 2.19 8.06 -2.91 -0.02 2.16 16 30 H 0.15 1.56 8.06 -2.91 -0.02 1.53 16 31 H 0.15 1.66 8.06 -2.91 -0.02 1.64 16 32 H 0.14 2.42 8.06 -2.91 -0.02 2.40 16 33 H 0.11 3.63 7.90 -2.39 -0.02 3.61 16 34 H 0.11 3.82 8.14 -2.38 -0.02 3.80 16 35 H 0.13 5.71 5.33 -2.39 -0.01 5.70 16 36 H 0.09 3.62 6.71 -2.39 -0.02 3.60 16 37 H 0.12 3.46 8.14 -2.39 -0.02 3.44 16 38 H 0.12 3.43 8.14 -2.39 -0.02 3.41 16 39 H 0.08 2.99 8.14 -2.39 -0.02 2.97 16 Total: -1.00 -69.93 332.51 4.87 -65.06 By element: Atomic # 1 Polarization: 25.55 SS G_CDS: 1.07 Total: 26.62 kcal Atomic # 6 Polarization: -14.31 SS G_CDS: 4.16 Total: -10.15 kcal Atomic # 7 Polarization: -83.18 SS G_CDS: -1.89 Total: -85.07 kcal Atomic # 8 Polarization: -41.38 SS G_CDS: -0.50 Total: -41.87 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.41 kcal Total: -69.93 4.87 -65.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049425860.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.239 kcal (2) G-P(sol) polarization free energy of solvation -69.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.058 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds