Wall clock time and date at job start Fri Apr 10 2020 17:49:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46899 * 109.46988 * 2 1 4 4 C 1.46901 * 111.00254 * 293.95412 * 3 2 1 5 5 C 1.46903 * 110.99571 * 169.99800 * 3 2 1 6 6 C 1.52998 * 109.46960 * 189.99690 * 5 3 2 7 7 C 1.50698 * 109.46988 * 179.97438 * 6 5 3 8 8 O 1.21273 * 120.00259 * 0.02562 * 7 6 5 9 9 N 1.34779 * 119.99654 * 179.97438 * 7 6 5 10 10 C 1.46506 * 119.99714 * 180.02562 * 9 7 6 11 11 C 1.52995 * 109.47004 * 180.02562 * 10 9 7 12 12 O 1.42904 * 110.64058 * 298.31066 * 11 10 9 13 13 C 1.55156 * 110.72286 * 174.97843 * 11 10 9 14 14 C 1.54903 * 101.58351 * 206.13369 * 13 11 10 15 15 N 1.47421 * 104.83315 * 37.00756 * 14 13 11 16 16 C 1.36939 * 125.64858 * 155.85141 * 15 14 13 17 17 H 1.07996 * 119.99982 * 353.90110 * 16 15 14 18 18 C 1.38817 * 119.99954 * 173.89711 * 16 15 14 19 19 N 1.31613 * 119.99986 * 6.83731 * 18 16 15 20 20 Si 1.86797 * 119.99814 * 186.83100 * 18 16 15 21 21 H 1.48505 * 109.47109 * 94.99070 * 20 18 16 22 22 H 1.48503 * 109.46980 * 214.98572 * 20 18 16 23 23 H 1.48496 * 109.47373 * 334.98809 * 20 18 16 24 24 C 1.47020 * 108.70220 * 335.86868 * 15 14 13 25 25 H 1.08997 * 109.47041 * 299.99841 * 1 2 3 26 26 H 1.08997 * 109.47311 * 60.00107 * 1 2 3 27 27 H 1.09003 * 109.47104 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46772 * 239.99838 * 2 1 3 29 29 H 1.08999 * 109.46659 * 120.00263 * 2 1 3 30 30 H 1.09001 * 109.46557 * 296.04634 * 4 3 2 31 31 H 1.08999 * 109.47062 * 56.04558 * 4 3 2 32 32 H 1.08998 * 109.47044 * 176.05143 * 4 3 2 33 33 H 1.09006 * 109.46734 * 70.00371 * 5 3 2 34 34 H 1.08995 * 109.47527 * 310.00056 * 5 3 2 35 35 H 1.09006 * 109.46841 * 60.00747 * 6 5 3 36 36 H 1.08995 * 109.47299 * 300.00505 * 6 5 3 37 37 H 0.97002 * 120.00465 * 0.02562 * 9 7 6 38 38 H 1.09004 * 109.47159 * 60.00196 * 10 9 7 39 39 H 1.08995 * 109.47361 * 300.00333 * 10 9 7 40 40 H 0.96699 * 113.99785 * 61.68887 * 12 11 10 41 41 H 1.09001 * 111.00881 * 88.05545 * 13 11 10 42 42 H 1.09003 * 111.00263 * 324.20864 * 13 11 10 43 43 H 1.09002 * 110.36741 * 278.16597 * 14 13 11 44 44 H 1.09003 * 110.36584 * 155.84338 * 14 13 11 45 45 H 0.97001 * 120.00020 * 179.97438 * 19 18 16 46 46 H 1.09006 * 109.87818 * 120.47590 * 24 15 14 47 47 H 1.08994 * 109.88526 * 241.48611 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6702 2.0670 -1.2533 5 6 3.4685 1.4311 0.2382 6 6 3.8999 2.8790 0.4791 7 6 5.3861 2.9262 0.7241 8 8 6.0363 1.9027 0.7072 9 7 5.9929 4.1062 0.9610 10 6 7.4378 4.1522 1.1986 11 6 7.8692 5.6001 1.4396 12 8 7.5965 6.4049 0.2906 13 6 9.3721 5.6694 1.8188 14 6 9.4245 6.9790 2.6444 15 7 8.1598 6.9986 3.4017 16 6 7.9426 7.6701 4.5752 17 1 8.7624 8.1669 5.0728 18 6 6.6687 7.7124 5.1251 19 7 5.6989 6.9982 4.5946 20 14 6.3311 8.7830 6.6182 21 1 5.7989 10.0967 6.1752 22 1 5.3337 8.1139 7.4916 23 1 7.5922 8.9894 7.3747 24 6 7.1706 6.1774 2.6886 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 2.1770 1.5790 -2.0859 31 1 0.5919 2.0179 -1.4052 32 1 1.9825 3.1098 -1.1987 33 1 3.9925 1.0358 -0.6321 34 1 3.7122 0.8289 1.1134 35 1 3.3759 3.2743 1.3494 36 1 3.6562 3.4812 -0.3961 37 1 5.4729 4.9250 0.9741 38 1 7.9619 3.7565 0.3285 39 1 7.6814 3.5503 2.0740 40 1 6.6590 6.4549 0.0590 41 1 9.9967 5.7434 0.9286 42 1 9.6614 4.8122 2.4269 43 1 9.4836 7.8428 1.9823 44 1 10.2748 6.9637 3.3263 45 1 4.8088 7.0275 4.9791 46 1 6.8304 5.3654 3.3315 47 1 6.3228 6.7940 2.3904 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754760063.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:49:41 Heat of formation + Delta-G solvation = -59.260638 kcal Electronic energy + Delta-G solvation = -25084.398886 eV Core-core repulsion = 21495.886934 eV Total energy + Delta-G solvation = -3588.511952 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 299.200 amu Computer time = 3.31 seconds Orbital eigenvalues (eV) -39.84932 -38.55019 -37.73721 -35.07749 -33.96279 -32.54039 -32.21320 -30.00488 -29.23310 -27.95707 -26.86367 -25.69441 -23.87072 -22.64404 -21.05084 -20.56099 -19.90266 -19.75160 -17.62005 -16.82081 -16.45230 -16.13328 -15.66406 -15.45600 -15.15086 -14.56156 -14.40264 -14.19927 -13.95167 -13.81745 -13.52873 -13.17378 -12.92024 -12.74938 -12.33653 -12.24730 -12.11598 -12.04768 -11.91223 -11.60943 -11.50419 -11.21323 -11.09724 -10.98092 -10.85764 -10.66675 -10.47729 -10.27175 -10.05072 -9.81780 -9.63819 -9.30152 -8.86099 -8.66236 -8.55263 -6.88036 -5.78918 -3.09848 2.80131 3.22126 3.37901 3.43544 3.45110 3.84653 4.45041 4.57018 4.71698 4.77344 4.92897 4.95748 5.00830 5.12403 5.23502 5.26816 5.31258 5.33230 5.44471 5.46726 5.48881 5.58015 5.62633 5.69969 5.77382 5.82892 5.87413 5.91316 5.99586 6.01137 6.16551 6.29455 6.43136 6.57716 6.64702 6.83584 6.84502 6.89480 7.28288 7.41927 7.64326 7.70215 8.06543 8.18035 8.37377 9.15581 9.76492 10.42696 11.34034 Molecular weight = 299.20amu Principal moments of inertia in cm(-1) A = 0.015270 B = 0.003335 C = 0.002879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1833.205573 B = 8394.411277 C = 9724.355328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.050 3.950 3 N -0.545 5.545 4 C 0.017 3.983 5 C 0.072 3.928 6 C -0.139 4.139 7 C 0.516 3.484 8 O -0.551 6.551 9 N -0.721 5.721 10 C 0.110 3.890 11 C 0.085 3.915 12 O -0.551 6.551 13 C -0.115 4.115 14 C 0.136 3.864 15 N -0.604 5.604 16 C -0.227 4.227 17 H 0.079 0.921 18 C -0.008 4.008 19 N -0.923 5.923 20 Si 0.912 3.088 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.281 1.281 24 C 0.163 3.837 25 H 0.064 0.936 26 H 0.054 0.946 27 H 0.057 0.943 28 H 0.032 0.968 29 H 0.075 0.925 30 H 0.024 0.976 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.041 0.959 34 H 0.082 0.918 35 H 0.105 0.895 36 H 0.092 0.908 37 H 0.403 0.597 38 H 0.068 0.932 39 H 0.076 0.924 40 H 0.368 0.632 41 H 0.072 0.928 42 H 0.079 0.921 43 H 0.025 0.975 44 H 0.041 0.959 45 H 0.252 0.748 46 H 0.052 0.948 47 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.722 -9.998 -11.844 16.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.078 4.078 3 N -0.269 5.269 4 C -0.131 4.131 5 C -0.056 4.056 6 C -0.179 4.179 7 C 0.302 3.698 8 O -0.429 6.429 9 N -0.373 5.373 10 C -0.014 4.014 11 C 0.044 3.956 12 O -0.356 6.356 13 C -0.154 4.154 14 C 0.010 3.990 15 N -0.331 5.331 16 C -0.355 4.355 17 H 0.097 0.903 18 C -0.204 4.204 19 N -0.571 5.571 20 Si 0.742 3.258 21 H -0.216 1.216 22 H -0.218 1.218 23 H -0.206 1.206 24 C 0.037 3.963 25 H 0.083 0.917 26 H 0.073 0.927 27 H 0.076 0.924 28 H 0.050 0.950 29 H 0.094 0.906 30 H 0.043 0.957 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.059 0.941 34 H 0.101 0.899 35 H 0.124 0.876 36 H 0.110 0.890 37 H 0.237 0.763 38 H 0.086 0.914 39 H 0.094 0.906 40 H 0.214 0.786 41 H 0.091 0.909 42 H 0.098 0.902 43 H 0.043 0.957 44 H 0.059 0.941 45 H 0.062 0.938 46 H 0.070 0.930 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -5.989 -10.370 -11.293 16.461 hybrid contribution -0.746 0.528 0.172 0.930 sum -6.735 -9.842 -11.121 16.307 Atomic orbital electron populations 1.21811 0.94847 1.01479 1.02538 1.22076 0.96058 0.88699 1.00916 1.61985 1.14057 1.16054 1.34838 1.22505 1.01445 0.99505 0.89689 1.21801 0.86267 0.95708 1.01801 1.21629 0.92432 0.99043 1.04780 1.20549 0.89882 0.83284 0.76051 1.90677 1.67005 1.33536 1.51713 1.45936 1.09540 1.09570 1.72209 1.21935 0.80182 0.97604 1.01721 1.22914 0.97647 0.87539 0.87507 1.86508 1.29643 1.72015 1.47428 1.22704 0.92922 1.00012 0.99716 1.21558 0.90192 0.94037 0.93206 1.44377 1.07534 1.57202 1.23950 1.19099 0.93956 1.25306 0.97131 0.90278 1.24801 0.95794 1.00156 0.99679 1.69913 1.01651 1.42845 1.42692 0.86092 0.77712 0.80080 0.81869 1.21623 1.21762 1.20641 1.21788 0.91185 0.94612 0.88676 0.91704 0.92713 0.92378 0.94977 0.90637 0.95697 0.91145 0.91040 0.94061 0.89907 0.87630 0.89008 0.76262 0.91412 0.90603 0.78571 0.90948 0.90239 0.95699 0.94090 0.93756 0.92969 0.93243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.84 37.16 0.37 -0.75 16 2 C 0.05 0.45 5.68 -3.82 -0.02 0.43 16 3 N -0.54 -5.55 4.76 -242.91 -1.16 -6.71 16 4 C 0.02 0.14 9.13 60.07 0.55 0.69 16 5 C 0.07 0.83 4.25 -3.82 -0.02 0.81 16 6 C -0.14 -1.57 5.62 -27.88 -0.16 -1.72 16 7 C 0.52 7.58 7.83 -10.98 -0.09 7.50 16 8 O -0.55 -9.95 15.98 5.56 0.09 -9.86 16 9 N -0.72 -10.41 5.17 -60.29 -0.31 -10.72 16 10 C 0.11 1.77 4.73 -4.04 -0.02 1.76 16 11 C 0.09 1.52 0.92 -88.79 -0.08 1.44 16 12 O -0.55 -9.37 13.10 -35.23 -0.46 -9.83 16 13 C -0.11 -2.02 6.26 -24.59 -0.15 -2.17 16 14 C 0.14 2.84 7.23 -2.53 -0.02 2.82 16 15 N -0.60 -15.20 3.39 -170.08 -0.58 -15.77 16 16 C -0.23 -6.25 10.26 -15.06 -0.15 -6.40 16 17 H 0.08 2.12 7.84 -52.49 -0.41 1.70 16 18 C -0.01 -0.23 5.48 -17.43 -0.10 -0.32 16 19 N -0.92 -26.03 10.36 55.49 0.57 -25.46 16 20 Si 0.91 21.83 29.56 -169.99 -5.02 16.80 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 24 C 0.16 3.69 4.16 -3.07 -0.01 3.68 16 25 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 26 H 0.05 0.39 6.47 -51.93 -0.34 0.05 16 27 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.03 0.28 8.12 -51.93 -0.42 -0.14 16 29 H 0.08 0.68 7.93 -51.93 -0.41 0.27 16 30 H 0.02 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.07 0.53 6.30 -51.93 -0.33 0.20 16 32 H 0.07 0.57 6.47 -51.93 -0.34 0.24 16 33 H 0.04 0.50 8.08 -51.93 -0.42 0.08 16 34 H 0.08 1.04 7.89 -51.93 -0.41 0.63 16 35 H 0.11 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.09 0.85 6.55 -51.93 -0.34 0.51 16 37 H 0.40 5.26 7.38 -40.82 -0.30 4.96 16 38 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.08 1.33 8.13 -51.93 -0.42 0.91 16 40 H 0.37 5.03 8.12 45.56 0.37 5.40 16 41 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 42 H 0.08 1.32 8.04 -51.93 -0.42 0.91 16 43 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 44 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 45 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 46 H 0.05 1.32 7.23 -51.93 -0.38 0.95 16 47 H 0.05 1.22 7.28 -51.93 -0.38 0.84 16 LS Contribution 370.31 15.07 5.58 5.58 Total: -1.00 -32.32 370.31 -8.65 -40.96 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: -7.45 Total: 7.25 kcal Atomic # 6 Polarization: 7.66 SS G_CDS: 0.10 Total: 7.76 kcal Atomic # 7 Polarization: -57.19 SS G_CDS: -1.47 Total: -58.66 kcal Atomic # 8 Polarization: -19.32 SS G_CDS: -0.37 Total: -19.69 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.32 -8.65 -40.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754760063.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.298 kcal (2) G-P(sol) polarization free energy of solvation -32.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.31 seconds