Wall clock time and date at job start Fri Apr 10 2020 17:49:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46899 * 109.46988 * 2 1 4 4 C 1.46901 * 111.00254 * 293.95412 * 3 2 1 5 5 C 1.46903 * 110.99571 * 169.99800 * 3 2 1 6 6 C 1.52998 * 109.46960 * 189.99690 * 5 3 2 7 7 C 1.50698 * 109.46988 * 179.97438 * 6 5 3 8 8 O 1.21273 * 120.00259 * 0.02562 * 7 6 5 9 9 N 1.34779 * 119.99654 * 179.97438 * 7 6 5 10 10 C 1.46506 * 119.99714 * 180.02562 * 9 7 6 11 11 C 1.52995 * 109.47004 * 180.02562 * 10 9 7 12 12 O 1.42904 * 110.64058 * 298.31066 * 11 10 9 13 13 C 1.55156 * 110.72286 * 174.97843 * 11 10 9 14 14 C 1.54903 * 101.58351 * 206.13369 * 13 11 10 15 15 N 1.47421 * 104.83315 * 37.00756 * 14 13 11 16 16 C 1.36939 * 125.64858 * 155.85141 * 15 14 13 17 17 H 1.07996 * 119.99982 * 353.90110 * 16 15 14 18 18 C 1.38817 * 119.99954 * 173.89711 * 16 15 14 19 19 N 1.31613 * 119.99986 * 6.83731 * 18 16 15 20 20 Si 1.86797 * 119.99814 * 186.83100 * 18 16 15 21 21 H 1.48505 * 109.47109 * 94.99070 * 20 18 16 22 22 H 1.48503 * 109.46980 * 214.98572 * 20 18 16 23 23 H 1.48496 * 109.47373 * 334.98809 * 20 18 16 24 24 C 1.47020 * 108.70220 * 335.86868 * 15 14 13 25 25 H 1.08997 * 109.47041 * 299.99841 * 1 2 3 26 26 H 1.08997 * 109.47311 * 60.00107 * 1 2 3 27 27 H 1.09003 * 109.47104 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46772 * 239.99838 * 2 1 3 29 29 H 1.08999 * 109.46659 * 120.00263 * 2 1 3 30 30 H 1.09001 * 109.46557 * 296.04634 * 4 3 2 31 31 H 1.08999 * 109.47062 * 56.04558 * 4 3 2 32 32 H 1.08998 * 109.47044 * 176.05143 * 4 3 2 33 33 H 1.09006 * 109.46734 * 70.00371 * 5 3 2 34 34 H 1.08995 * 109.47527 * 310.00056 * 5 3 2 35 35 H 1.09006 * 109.46841 * 60.00747 * 6 5 3 36 36 H 1.08995 * 109.47299 * 300.00505 * 6 5 3 37 37 H 0.97002 * 120.00465 * 0.02562 * 9 7 6 38 38 H 1.09004 * 109.47159 * 60.00196 * 10 9 7 39 39 H 1.08995 * 109.47361 * 300.00333 * 10 9 7 40 40 H 0.96699 * 113.99785 * 61.68887 * 12 11 10 41 41 H 1.09001 * 111.00881 * 88.05545 * 13 11 10 42 42 H 1.09003 * 111.00263 * 324.20864 * 13 11 10 43 43 H 1.09002 * 110.36741 * 278.16597 * 14 13 11 44 44 H 1.09003 * 110.36584 * 155.84338 * 14 13 11 45 45 H 0.97001 * 120.00020 * 179.97438 * 19 18 16 46 46 H 1.09006 * 109.87818 * 120.47590 * 24 15 14 47 47 H 1.08994 * 109.88526 * 241.48611 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6702 2.0670 -1.2533 5 6 3.4685 1.4311 0.2382 6 6 3.8999 2.8790 0.4791 7 6 5.3861 2.9262 0.7241 8 8 6.0363 1.9027 0.7072 9 7 5.9929 4.1062 0.9610 10 6 7.4378 4.1522 1.1986 11 6 7.8692 5.6001 1.4396 12 8 7.5965 6.4049 0.2906 13 6 9.3721 5.6694 1.8188 14 6 9.4245 6.9790 2.6444 15 7 8.1598 6.9986 3.4017 16 6 7.9426 7.6701 4.5752 17 1 8.7624 8.1669 5.0728 18 6 6.6687 7.7124 5.1251 19 7 5.6989 6.9982 4.5946 20 14 6.3311 8.7830 6.6182 21 1 5.7989 10.0967 6.1752 22 1 5.3337 8.1139 7.4916 23 1 7.5922 8.9894 7.3747 24 6 7.1706 6.1774 2.6886 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 2.1770 1.5790 -2.0859 31 1 0.5919 2.0179 -1.4052 32 1 1.9825 3.1098 -1.1987 33 1 3.9925 1.0358 -0.6321 34 1 3.7122 0.8289 1.1134 35 1 3.3759 3.2743 1.3494 36 1 3.6562 3.4812 -0.3961 37 1 5.4729 4.9250 0.9741 38 1 7.9619 3.7565 0.3285 39 1 7.6814 3.5503 2.0740 40 1 6.6590 6.4549 0.0590 41 1 9.9967 5.7434 0.9286 42 1 9.6614 4.8122 2.4269 43 1 9.4836 7.8428 1.9823 44 1 10.2748 6.9637 3.3263 45 1 4.8088 7.0275 4.9791 46 1 6.8304 5.3654 3.3315 47 1 6.3228 6.7940 2.3904 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754760063.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:49:39 Heat of formation + Delta-G solvation = -84.624877 kcal Electronic energy + Delta-G solvation = -25085.498762 eV Core-core repulsion = 21495.886934 eV Total energy + Delta-G solvation = -3589.611828 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 299.200 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.11896 -39.94607 -38.63358 -36.72782 -35.26599 -34.12829 -33.38113 -31.35323 -30.42233 -29.46306 -27.89030 -27.22885 -25.40790 -23.69265 -22.26880 -21.72881 -21.35319 -21.08889 -19.10093 -18.48423 -17.81894 -17.09340 -16.96448 -16.59767 -16.24235 -16.06094 -15.75163 -15.59606 -15.19243 -15.04334 -14.81286 -14.40711 -14.30821 -13.95034 -13.84436 -13.45891 -13.30528 -13.09025 -13.02637 -12.80329 -12.71186 -12.67658 -12.38789 -12.28337 -12.11966 -11.94110 -11.86512 -11.78119 -11.74929 -11.68445 -10.93784 -10.83303 -10.71304 -10.12981 -9.33371 -8.88537 -7.86951 -5.19835 1.47185 1.48152 1.56771 1.62028 2.10608 2.49345 3.00226 3.18998 3.31883 3.46744 3.80861 3.87918 3.92044 3.94140 3.97921 4.12240 4.17592 4.31294 4.47616 4.53589 4.56370 4.58614 4.62301 4.64015 4.73477 4.81591 4.91093 4.94153 4.96109 5.01047 5.01555 5.04291 5.14179 5.32277 5.35480 5.37929 5.41656 5.51313 5.67696 6.04091 6.11491 6.18542 6.47392 6.77349 7.10242 7.19606 7.76188 8.41329 9.23743 Molecular weight = 299.20amu Principal moments of inertia in cm(-1) A = 0.015270 B = 0.003335 C = 0.002879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1833.205573 B = 8394.411277 C = 9724.355328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.046 3.954 3 N -0.553 5.553 4 C 0.014 3.986 5 C 0.078 3.922 6 C -0.128 4.128 7 C 0.515 3.485 8 O -0.586 6.586 9 N -0.717 5.717 10 C 0.120 3.880 11 C 0.105 3.895 12 O -0.553 6.553 13 C -0.107 4.107 14 C 0.129 3.871 15 N -0.628 5.628 16 C -0.245 4.245 17 H 0.080 0.920 18 C -0.060 4.060 19 N -0.943 5.943 20 Si 0.975 3.025 21 H -0.288 1.288 22 H -0.294 1.294 23 H -0.271 1.271 24 C 0.175 3.825 25 H 0.056 0.944 26 H 0.060 0.940 27 H 0.070 0.930 28 H 0.034 0.966 29 H 0.069 0.931 30 H 0.026 0.974 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.033 0.967 34 H 0.065 0.935 35 H 0.108 0.892 36 H 0.118 0.882 37 H 0.410 0.590 38 H 0.080 0.920 39 H 0.059 0.941 40 H 0.383 0.617 41 H 0.100 0.900 42 H 0.088 0.912 43 H 0.023 0.977 44 H 0.048 0.952 45 H 0.248 0.752 46 H 0.019 0.981 47 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.984 -9.820 -12.873 17.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.081 4.081 3 N -0.278 5.278 4 C -0.133 4.133 5 C -0.050 4.050 6 C -0.168 4.168 7 C 0.303 3.697 8 O -0.467 6.467 9 N -0.369 5.369 10 C -0.005 4.005 11 C 0.063 3.937 12 O -0.360 6.360 13 C -0.146 4.146 14 C 0.004 3.996 15 N -0.355 5.355 16 C -0.374 4.374 17 H 0.098 0.902 18 C -0.254 4.254 19 N -0.592 5.592 20 Si 0.803 3.197 21 H -0.215 1.215 22 H -0.221 1.221 23 H -0.196 1.196 24 C 0.050 3.950 25 H 0.075 0.925 26 H 0.079 0.921 27 H 0.089 0.911 28 H 0.053 0.947 29 H 0.088 0.912 30 H 0.044 0.956 31 H 0.100 0.900 32 H 0.096 0.904 33 H 0.051 0.949 34 H 0.084 0.916 35 H 0.126 0.874 36 H 0.136 0.864 37 H 0.246 0.754 38 H 0.098 0.902 39 H 0.077 0.923 40 H 0.232 0.768 41 H 0.118 0.882 42 H 0.107 0.893 43 H 0.040 0.960 44 H 0.066 0.934 45 H 0.057 0.943 46 H 0.037 0.963 47 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -6.250 -10.173 -12.345 17.174 hybrid contribution -0.654 0.492 0.479 0.948 sum -6.904 -9.681 -11.866 16.798 Atomic orbital electron populations 1.21771 0.93550 1.02347 1.02436 1.22152 0.97095 0.88119 1.00773 1.62015 1.12853 1.16918 1.35975 1.22580 1.02242 0.99616 0.88887 1.21664 0.87283 0.95381 1.00691 1.21593 0.89696 0.99491 1.05982 1.21109 0.91086 0.82537 0.74988 1.90661 1.68051 1.34666 1.53319 1.45911 1.09030 1.10064 1.71865 1.21721 0.81328 0.95941 1.01467 1.22572 0.97327 0.88104 0.85718 1.86480 1.31224 1.71895 1.46406 1.22707 0.93025 0.98462 1.00385 1.21725 0.88765 0.95712 0.93355 1.44716 1.09590 1.57241 1.23907 1.19436 0.94230 1.25496 0.98269 0.90232 1.25576 0.95789 1.01471 1.02570 1.70099 1.01579 1.43726 1.43771 0.85117 0.77556 0.78191 0.78808 1.21463 1.22103 1.19614 1.21548 0.90709 0.92849 0.89920 0.92458 0.92064 0.91093 0.94741 0.91226 0.95553 0.90002 0.90410 0.94901 0.91640 0.87355 0.86355 0.75408 0.90212 0.92250 0.76836 0.88155 0.89310 0.95960 0.93381 0.94279 0.96311 0.95805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 9.84 71.98 0.71 -1.23 16 2 C 0.05 0.79 5.68 86.30 0.49 1.28 16 3 N -0.55 -10.68 4.76 -922.44 -4.39 -15.07 16 4 C 0.01 0.22 9.13 127.69 1.17 1.38 16 5 C 0.08 1.76 4.25 86.30 0.37 2.13 16 6 C -0.13 -2.75 5.62 29.85 0.17 -2.58 16 7 C 0.51 14.83 7.83 87.66 0.69 15.52 16 8 O -0.59 -21.14 15.98 -3.01 -0.05 -21.19 16 9 N -0.72 -20.18 5.17 -463.06 -2.40 -22.58 16 10 C 0.12 3.77 4.73 86.38 0.41 4.18 16 11 C 0.10 3.61 0.92 -9.61 -0.01 3.61 16 12 O -0.55 -17.73 13.10 -148.98 -1.95 -19.68 16 13 C -0.11 -3.56 6.26 31.98 0.20 -3.36 16 14 C 0.13 5.28 7.23 86.85 0.63 5.91 16 15 N -0.63 -31.74 3.39 -692.01 -2.35 -34.09 16 16 C -0.25 -13.62 10.26 84.03 0.86 -12.76 16 17 H 0.08 4.27 7.84 -2.91 -0.02 4.25 16 18 C -0.06 -3.37 5.48 84.86 0.47 -2.90 16 19 N -0.94 -54.09 10.36 21.65 0.22 -53.87 16 20 Si 0.97 45.09 29.56 68.60 2.03 47.12 16 21 H -0.29 -13.15 7.11 99.48 0.71 -12.45 16 22 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 23 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 24 C 0.18 8.02 4.16 86.73 0.36 8.39 16 25 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.06 0.75 6.47 -2.39 -0.02 0.73 16 27 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.03 0.57 8.12 -2.39 -0.02 0.55 16 29 H 0.07 1.24 7.93 -2.39 -0.02 1.22 16 30 H 0.03 0.39 8.14 -2.39 -0.02 0.38 16 31 H 0.08 1.06 6.30 -2.39 -0.02 1.04 16 32 H 0.08 1.07 6.47 -2.39 -0.02 1.05 16 33 H 0.03 0.79 8.08 -2.38 -0.02 0.77 16 34 H 0.07 1.68 7.89 -2.39 -0.02 1.66 16 35 H 0.11 2.34 8.14 -2.38 -0.02 2.32 16 36 H 0.12 1.93 6.55 -2.39 -0.02 1.91 16 37 H 0.41 10.39 7.38 -92.71 -0.68 9.71 16 38 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 39 H 0.06 2.08 8.13 -2.39 -0.02 2.06 16 40 H 0.38 9.77 8.12 -74.06 -0.60 9.16 16 41 H 0.10 2.81 8.14 -2.39 -0.02 2.80 16 42 H 0.09 2.79 8.04 -2.39 -0.02 2.77 16 43 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 44 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 45 H 0.25 13.85 8.31 -92.71 -0.77 13.08 16 46 H 0.02 0.98 7.23 -2.38 -0.02 0.96 16 47 H 0.02 1.20 7.28 -2.39 -0.02 1.18 16 Total: -1.00 -69.48 370.31 -2.71 -72.19 By element: Atomic # 1 Polarization: 27.94 SS G_CDS: -0.32 Total: 27.61 kcal Atomic # 6 Polarization: 13.05 SS G_CDS: 6.50 Total: 19.56 kcal Atomic # 7 Polarization: -116.70 SS G_CDS: -8.91 Total: -125.61 kcal Atomic # 8 Polarization: -38.87 SS G_CDS: -2.00 Total: -40.87 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -69.48 -2.71 -72.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754760063.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.430 kcal (2) G-P(sol) polarization free energy of solvation -69.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds