Wall clock time and date at job start Fri Apr 10 2020 17:47:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86801 * 119.99695 * 2 1 4 4 H 1.48507 * 109.47286 * 270.00507 * 3 2 1 5 5 H 1.48499 * 109.47106 * 30.00566 * 3 2 1 6 6 H 1.48503 * 109.46923 * 150.00658 * 3 2 1 7 7 C 1.38954 * 120.00243 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99936 * 359.97438 * 7 2 1 9 9 N 1.37092 * 119.99919 * 179.97438 * 7 2 1 10 10 C 1.34775 * 119.99859 * 179.97438 * 9 7 2 11 11 O 1.21287 * 119.99931 * 359.97438 * 10 9 7 12 12 C 1.50705 * 119.99930 * 179.97438 * 10 9 7 13 13 N 1.46897 * 109.46970 * 173.61069 * 12 10 9 14 14 C 1.46902 * 110.99801 * 163.26965 * 13 12 10 15 15 C 1.52994 * 109.47275 * 196.01607 * 14 13 12 16 16 C 1.50698 * 109.47283 * 173.08895 * 15 14 13 17 17 O 1.20818 * 120.00079 * 0.02562 * 16 15 14 18 18 O 1.34236 * 119.99872 * 180.02562 * 16 15 14 19 19 C 1.46896 * 111.00458 * 287.22351 * 13 12 10 20 20 C 1.53167 * 109.54696 * 149.91558 * 19 13 12 21 21 C 1.53092 * 109.16805 * 176.85138 * 20 19 13 22 22 O 1.42907 * 109.41151 * 302.39255 * 21 20 19 23 23 C 1.42907 * 114.09802 * 61.15644 * 22 21 20 24 24 C 1.53092 * 109.41326 * 298.84355 * 23 22 21 25 25 H 0.97000 * 120.00249 * 359.97438 * 1 2 3 26 26 H 0.97004 * 120.00133 * 359.97438 * 9 7 2 27 27 H 1.09006 * 109.47075 * 53.61131 * 12 10 9 28 28 H 1.08996 * 109.47389 * 293.61620 * 12 10 9 29 29 H 1.08995 * 109.47295 * 316.01869 * 14 13 12 30 30 H 1.09002 * 109.47222 * 76.01668 * 14 13 12 31 31 H 1.08999 * 109.47193 * 293.08976 * 15 14 13 32 32 H 1.09007 * 109.46973 * 53.08924 * 15 14 13 33 33 H 0.96707 * 116.99388 * 180.02562 * 18 16 15 34 34 H 1.09007 * 109.61216 * 29.69230 * 19 13 12 35 35 H 1.08997 * 109.52651 * 296.76037 * 20 19 13 36 36 H 1.09003 * 109.52076 * 56.94349 * 20 19 13 37 37 H 1.08995 * 109.48321 * 182.41363 * 21 20 19 38 38 H 1.09000 * 109.47940 * 62.37369 * 21 20 19 39 39 H 1.09000 * 109.48108 * 178.85391 * 23 22 21 40 40 H 1.09004 * 109.48806 * 58.82988 * 23 22 21 41 41 H 1.09003 * 109.51865 * 297.69563 * 24 23 22 42 42 H 1.08998 * 109.51978 * 177.51409 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4954 2.0466 -1.4001 5 1 1.4455 2.6526 0.7002 6 1 3.5457 1.4402 0.6999 7 6 2.0089 -1.2033 -0.0005 8 1 1.4690 -2.1386 -0.0005 9 7 3.3799 -1.2033 -0.0011 10 6 4.0538 -2.3704 -0.0011 11 8 3.4474 -3.4208 -0.0001 12 6 5.5608 -2.3704 -0.0022 13 7 6.0506 -3.7466 0.1521 14 6 7.4641 -3.8489 -0.2348 15 6 7.8297 -5.3192 -0.4473 16 6 9.2258 -5.4140 -1.0064 17 8 9.8633 -4.4087 -1.2133 18 8 9.7613 -6.6153 -1.2747 19 6 5.8444 -4.2281 1.5245 20 6 5.6341 -5.7452 1.5092 21 6 5.4986 -6.2485 2.9487 22 8 6.6654 -5.8865 3.6902 23 6 6.8868 -4.4775 3.7786 24 6 7.0779 -3.9032 2.3724 25 1 -0.4850 0.8400 0.0004 26 1 3.8648 -0.3632 -0.0014 27 1 5.9248 -1.7603 0.8245 28 1 5.9234 -1.9591 -0.9442 29 1 7.6285 -3.2962 -1.1597 30 1 8.0881 -3.4298 0.5546 31 1 7.7833 -5.8465 0.5056 32 1 7.1265 -5.7709 -1.1471 33 1 10.6599 -6.6256 -1.6319 34 1 4.9682 -3.7429 1.9547 35 1 4.7266 -5.9817 0.9538 36 1 6.4888 -6.2266 1.0340 37 1 5.3917 -7.3332 2.9460 38 1 4.6202 -5.7975 3.4102 39 1 7.7797 -4.2864 4.3739 40 1 6.0266 -4.0032 4.2511 41 1 7.9619 -4.3473 1.9147 42 1 7.2029 -2.8222 2.4344 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833067504.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:47:24 Heat of formation + Delta-G solvation = -150.632019 kcal Electronic energy + Delta-G solvation = -25652.991037 eV Core-core repulsion = 21826.965168 eV Total energy + Delta-G solvation = -3826.025869 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 300.156 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.70164 -39.86570 -38.34780 -36.95301 -36.24882 -33.94944 -32.12196 -31.84128 -31.48762 -31.08235 -27.20890 -25.14708 -24.41451 -23.64353 -22.47291 -20.80226 -19.86404 -19.33902 -18.35747 -18.16565 -16.89119 -16.73290 -16.21707 -15.98381 -15.88086 -15.22200 -14.94681 -14.82405 -14.63359 -14.03816 -13.97520 -13.36487 -13.22462 -13.07619 -12.93128 -12.62616 -12.39783 -12.20606 -11.91116 -11.78205 -11.72031 -11.66226 -11.23357 -11.05486 -10.87145 -10.79964 -10.61346 -10.57359 -10.07611 -9.99080 -9.57960 -9.54910 -8.61738 -8.18609 -8.03471 -6.32222 -3.83562 2.02226 2.77219 3.01039 3.05863 3.14157 3.73491 3.81229 3.90131 4.09120 4.60801 4.64944 4.75583 4.76938 4.94936 4.96503 5.12746 5.15885 5.20439 5.28178 5.40430 5.47946 5.50878 5.57403 5.62350 5.67061 5.69500 5.73064 5.81649 5.86686 5.93610 6.03974 6.26221 6.30793 6.39626 7.07400 7.14348 7.18609 7.57299 7.68987 8.13153 8.59441 8.94443 9.41635 9.82842 10.80941 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.015855 B = 0.004124 C = 0.003632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1765.635544 B = 6788.476500 C = 7706.344019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.042 3.958 3 Si 0.879 3.121 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.270 1.270 7 C -0.304 4.304 8 H 0.120 0.880 9 N -0.593 5.593 10 C 0.452 3.548 11 O -0.555 6.555 12 C 0.043 3.957 13 N -0.507 5.507 14 C 0.057 3.943 15 C -0.121 4.121 16 C 0.481 3.519 17 O -0.520 6.520 18 O -0.518 6.518 19 C 0.089 3.911 20 C -0.151 4.151 21 C 0.059 3.941 22 O -0.387 6.387 23 C 0.066 3.934 24 C -0.193 4.193 25 H 0.273 0.727 26 H 0.370 0.630 27 H 0.050 0.950 28 H 0.092 0.908 29 H 0.083 0.917 30 H 0.055 0.945 31 H 0.118 0.882 32 H 0.119 0.881 33 H 0.408 0.592 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.076 0.924 37 H 0.094 0.906 38 H 0.053 0.947 39 H 0.090 0.910 40 H 0.051 0.949 41 H 0.079 0.921 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.507 -8.673 3.098 20.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.161 4.161 3 Si 0.705 3.295 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.196 1.196 7 C -0.432 4.432 8 H 0.137 0.863 9 N -0.233 5.233 10 C 0.237 3.763 11 O -0.436 6.436 12 C -0.088 4.088 13 N -0.229 5.229 14 C -0.071 4.071 15 C -0.158 4.158 16 C 0.324 3.676 17 O -0.409 6.409 18 O -0.329 6.329 19 C -0.020 4.020 20 C -0.189 4.189 21 C -0.018 4.018 22 O -0.306 6.306 23 C -0.011 4.011 24 C -0.232 4.232 25 H 0.084 0.916 26 H 0.202 0.798 27 H 0.068 0.932 28 H 0.110 0.890 29 H 0.101 0.899 30 H 0.073 0.927 31 H 0.136 0.864 32 H 0.137 0.863 33 H 0.267 0.733 34 H 0.107 0.893 35 H 0.110 0.890 36 H 0.095 0.905 37 H 0.112 0.888 38 H 0.071 0.929 39 H 0.108 0.892 40 H 0.070 0.930 41 H 0.097 0.903 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 17.481 -9.410 2.947 20.070 hybrid contribution 1.435 2.290 0.054 2.703 sum 18.915 -7.119 3.001 20.432 Atomic orbital electron populations 1.69618 1.05633 1.27472 1.49486 1.25027 0.95465 0.97927 0.97703 0.86691 0.79732 0.84142 0.78916 1.19607 1.20214 1.19582 1.19409 0.79209 0.96577 1.48049 0.86284 1.42226 1.07517 1.06146 1.67424 1.19629 0.87980 0.84578 0.84071 1.90557 1.69231 1.30783 1.53050 1.21939 0.95745 0.89138 1.02010 1.61589 1.16003 1.21500 1.23805 1.22037 0.89059 0.94112 1.01937 1.21765 0.89522 1.00406 1.04151 1.23644 0.89625 0.80348 0.74002 1.90718 1.63015 1.37345 1.49782 1.84562 1.36546 1.34488 1.77340 1.21738 0.96975 0.96387 0.86900 1.22499 1.04279 0.94984 0.97122 1.22660 0.87647 1.00450 0.91061 1.87888 1.45955 1.22610 1.74121 1.22479 1.01246 0.81793 0.95622 1.23004 1.00787 1.01655 0.97742 0.91630 0.79792 0.93176 0.88978 0.89861 0.92686 0.86442 0.86305 0.73348 0.89278 0.89050 0.90543 0.88769 0.92910 0.89190 0.93040 0.90305 0.91025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.54 13.96 55.50 0.77 -24.76 16 2 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 3 Si 0.88 19.19 27.74 -169.99 -4.71 14.48 16 4 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 5 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 6 H -0.27 -5.37 6.52 56.52 0.37 -5.00 16 7 C -0.30 -8.43 10.16 -14.93 -0.15 -8.58 16 8 H 0.12 3.78 7.39 -52.49 -0.39 3.39 16 9 N -0.59 -13.77 5.09 -10.96 -0.06 -13.82 16 10 C 0.45 9.84 7.12 -10.98 -0.08 9.77 16 11 O -0.56 -14.14 15.22 5.55 0.08 -14.06 16 12 C 0.04 0.69 5.39 -4.98 -0.03 0.66 16 13 N -0.51 -7.36 3.95 -227.87 -0.90 -8.26 16 14 C 0.06 0.68 3.85 -3.83 -0.01 0.66 16 15 C -0.12 -1.25 4.56 -27.89 -0.13 -1.38 16 16 C 0.48 5.07 8.33 36.00 0.30 5.37 16 17 O -0.52 -6.94 16.64 -18.74 -0.31 -7.25 16 18 O -0.52 -4.22 13.42 -39.27 -0.53 -4.74 16 19 C 0.09 1.23 1.62 -67.54 -0.11 1.12 16 20 C -0.15 -1.92 5.39 -26.60 -0.14 -2.06 16 21 C 0.06 0.69 6.84 37.20 0.25 0.95 16 22 O -0.39 -4.80 10.77 -35.23 -0.38 -5.18 16 23 C 0.07 0.73 6.84 37.20 0.25 0.98 16 24 C -0.19 -2.19 4.15 -26.59 -0.11 -2.30 16 25 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 26 H 0.37 7.58 5.76 -40.82 -0.24 7.34 16 27 H 0.05 0.71 7.69 -51.93 -0.40 0.31 16 28 H 0.09 1.31 7.71 -51.93 -0.40 0.91 16 29 H 0.08 1.03 7.46 -51.93 -0.39 0.64 16 30 H 0.06 0.64 5.46 -51.93 -0.28 0.35 16 31 H 0.12 1.15 4.50 -51.93 -0.23 0.91 16 32 H 0.12 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.41 1.60 9.10 45.56 0.41 2.01 16 34 H 0.09 1.51 6.83 -51.93 -0.35 1.16 16 35 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 36 H 0.08 0.86 4.31 -51.93 -0.22 0.63 16 37 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 38 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.08 0.85 5.10 -51.93 -0.26 0.59 16 42 H 0.07 0.78 7.79 -51.93 -0.40 0.38 16 LS Contribution 333.53 15.07 5.03 5.03 Total: -1.00 -33.92 333.53 -5.92 -39.84 By element: Atomic # 1 Polarization: 17.39 SS G_CDS: -4.86 Total: 12.53 kcal Atomic # 6 Polarization: 6.27 SS G_CDS: -0.05 Total: 6.22 kcal Atomic # 7 Polarization: -46.67 SS G_CDS: -0.18 Total: -46.85 kcal Atomic # 8 Polarization: -30.10 SS G_CDS: -1.13 Total: -31.23 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -4.71 Total: 14.48 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -33.92 -5.92 -39.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833067504.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.795 kcal (2) G-P(sol) polarization free energy of solvation -33.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds