Wall clock time and date at job start Fri Apr 10 2020 17:47:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86801 * 119.99695 * 2 1 4 4 H 1.48507 * 109.47286 * 270.00507 * 3 2 1 5 5 H 1.48499 * 109.47106 * 30.00566 * 3 2 1 6 6 H 1.48503 * 109.46923 * 150.00658 * 3 2 1 7 7 C 1.38954 * 120.00243 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99936 * 359.97438 * 7 2 1 9 9 N 1.37092 * 119.99919 * 179.97438 * 7 2 1 10 10 C 1.34775 * 119.99859 * 179.97438 * 9 7 2 11 11 O 1.21287 * 119.99931 * 359.97438 * 10 9 7 12 12 C 1.50705 * 119.99930 * 179.97438 * 10 9 7 13 13 N 1.46897 * 109.46970 * 173.61069 * 12 10 9 14 14 C 1.46902 * 110.99801 * 163.26965 * 13 12 10 15 15 C 1.52994 * 109.47275 * 196.01607 * 14 13 12 16 16 C 1.50698 * 109.47283 * 173.08895 * 15 14 13 17 17 O 1.20818 * 120.00079 * 0.02562 * 16 15 14 18 18 O 1.34236 * 119.99872 * 180.02562 * 16 15 14 19 19 C 1.46896 * 111.00458 * 287.22351 * 13 12 10 20 20 C 1.53167 * 109.54696 * 149.91558 * 19 13 12 21 21 C 1.53092 * 109.16805 * 176.85138 * 20 19 13 22 22 O 1.42907 * 109.41151 * 302.39255 * 21 20 19 23 23 C 1.42907 * 114.09802 * 61.15644 * 22 21 20 24 24 C 1.53092 * 109.41326 * 298.84355 * 23 22 21 25 25 H 0.97000 * 120.00249 * 359.97438 * 1 2 3 26 26 H 0.97004 * 120.00133 * 359.97438 * 9 7 2 27 27 H 1.09006 * 109.47075 * 53.61131 * 12 10 9 28 28 H 1.08996 * 109.47389 * 293.61620 * 12 10 9 29 29 H 1.08995 * 109.47295 * 316.01869 * 14 13 12 30 30 H 1.09002 * 109.47222 * 76.01668 * 14 13 12 31 31 H 1.08999 * 109.47193 * 293.08976 * 15 14 13 32 32 H 1.09007 * 109.46973 * 53.08924 * 15 14 13 33 33 H 0.96707 * 116.99388 * 180.02562 * 18 16 15 34 34 H 1.09007 * 109.61216 * 29.69230 * 19 13 12 35 35 H 1.08997 * 109.52651 * 296.76037 * 20 19 13 36 36 H 1.09003 * 109.52076 * 56.94349 * 20 19 13 37 37 H 1.08995 * 109.48321 * 182.41363 * 21 20 19 38 38 H 1.09000 * 109.47940 * 62.37369 * 21 20 19 39 39 H 1.09000 * 109.48108 * 178.85391 * 23 22 21 40 40 H 1.09004 * 109.48806 * 58.82988 * 23 22 21 41 41 H 1.09003 * 109.51865 * 297.69563 * 24 23 22 42 42 H 1.08998 * 109.51978 * 177.51409 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 2.4954 2.0466 -1.4001 5 1 1.4455 2.6526 0.7002 6 1 3.5457 1.4402 0.6999 7 6 2.0089 -1.2033 -0.0005 8 1 1.4690 -2.1386 -0.0005 9 7 3.3799 -1.2033 -0.0011 10 6 4.0538 -2.3704 -0.0011 11 8 3.4474 -3.4208 -0.0001 12 6 5.5608 -2.3704 -0.0022 13 7 6.0506 -3.7466 0.1521 14 6 7.4641 -3.8489 -0.2348 15 6 7.8297 -5.3192 -0.4473 16 6 9.2258 -5.4140 -1.0064 17 8 9.8633 -4.4087 -1.2133 18 8 9.7613 -6.6153 -1.2747 19 6 5.8444 -4.2281 1.5245 20 6 5.6341 -5.7452 1.5092 21 6 5.4986 -6.2485 2.9487 22 8 6.6654 -5.8865 3.6902 23 6 6.8868 -4.4775 3.7786 24 6 7.0779 -3.9032 2.3724 25 1 -0.4850 0.8400 0.0004 26 1 3.8648 -0.3632 -0.0014 27 1 5.9248 -1.7603 0.8245 28 1 5.9234 -1.9591 -0.9442 29 1 7.6285 -3.2962 -1.1597 30 1 8.0881 -3.4298 0.5546 31 1 7.7833 -5.8465 0.5056 32 1 7.1265 -5.7709 -1.1471 33 1 10.6599 -6.6256 -1.6319 34 1 4.9682 -3.7429 1.9547 35 1 4.7266 -5.9817 0.9538 36 1 6.4888 -6.2266 1.0340 37 1 5.3917 -7.3332 2.9460 38 1 4.6202 -5.7975 3.4102 39 1 7.7797 -4.2864 4.3739 40 1 6.0266 -4.0032 4.2511 41 1 7.9619 -4.3473 1.9147 42 1 7.2029 -2.8222 2.4344 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833067504.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:47:23 Heat of formation + Delta-G solvation = -178.827991 kcal Electronic energy + Delta-G solvation = -25654.213707 eV Core-core repulsion = 21826.965168 eV Total energy + Delta-G solvation = -3827.248538 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 300.156 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.63723 -40.85448 -39.92505 -38.07335 -37.05076 -35.91895 -33.75053 -33.07467 -32.72562 -32.03502 -28.65097 -26.15611 -26.08052 -24.58312 -23.56673 -21.67422 -21.25215 -20.82831 -20.17429 -18.99151 -17.85005 -17.71250 -17.59185 -17.10587 -16.85127 -16.75232 -16.18528 -16.05904 -15.71717 -15.37781 -15.11527 -14.94099 -14.53255 -14.24456 -14.17658 -13.96806 -13.72970 -13.36690 -13.12106 -12.99585 -12.79377 -12.64834 -12.50291 -12.40469 -12.10052 -11.98048 -11.87190 -11.68804 -11.50339 -11.47866 -11.06638 -10.53442 -10.37780 -10.21561 -9.19665 -8.39929 -5.99941 1.22569 1.29790 1.35385 1.43644 1.97744 2.01119 2.23238 2.71248 2.95082 3.15858 3.20690 3.67513 3.78748 3.85923 4.01645 4.03316 4.15543 4.23877 4.25858 4.31516 4.42041 4.50862 4.53503 4.56454 4.64459 4.73365 4.78296 4.81655 4.86877 4.95040 5.07762 5.25720 5.35937 5.54739 5.64519 5.90167 6.01860 6.11311 6.23748 6.61955 6.91088 7.02618 7.42844 8.00405 8.77796 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.015855 B = 0.004124 C = 0.003632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1765.635544 B = 6788.476500 C = 7706.344019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.015 4.015 3 Si 0.962 3.038 4 H -0.258 1.258 5 H -0.276 1.276 6 H -0.233 1.233 7 C -0.324 4.324 8 H 0.056 0.944 9 N -0.596 5.596 10 C 0.453 3.547 11 O -0.599 6.599 12 C 0.053 3.947 13 N -0.523 5.523 14 C 0.060 3.940 15 C -0.117 4.117 16 C 0.492 3.508 17 O -0.550 6.550 18 O -0.513 6.513 19 C 0.088 3.912 20 C -0.147 4.147 21 C 0.061 3.939 22 O -0.393 6.393 23 C 0.062 3.938 24 C -0.183 4.183 25 H 0.278 0.722 26 H 0.388 0.612 27 H 0.078 0.922 28 H 0.118 0.882 29 H 0.082 0.918 30 H 0.066 0.934 31 H 0.126 0.874 32 H 0.119 0.881 33 H 0.428 0.572 34 H 0.050 0.950 35 H 0.062 0.938 36 H 0.096 0.904 37 H 0.114 0.886 38 H 0.038 0.962 39 H 0.115 0.885 40 H 0.044 0.956 41 H 0.091 0.909 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.304 -7.663 3.332 23.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.213 4.213 3 Si 0.782 3.218 4 H -0.183 1.183 5 H -0.201 1.201 6 H -0.156 1.156 7 C -0.453 4.453 8 H 0.074 0.926 9 N -0.238 5.238 10 C 0.241 3.759 11 O -0.482 6.482 12 C -0.078 4.078 13 N -0.246 5.246 14 C -0.067 4.067 15 C -0.155 4.155 16 C 0.335 3.665 17 O -0.441 6.441 18 O -0.326 6.326 19 C -0.020 4.020 20 C -0.184 4.184 21 C -0.016 4.016 22 O -0.312 6.312 23 C -0.016 4.016 24 C -0.222 4.222 25 H 0.088 0.912 26 H 0.223 0.777 27 H 0.096 0.904 28 H 0.136 0.864 29 H 0.101 0.899 30 H 0.084 0.916 31 H 0.143 0.857 32 H 0.137 0.863 33 H 0.290 0.710 34 H 0.068 0.932 35 H 0.081 0.919 36 H 0.114 0.886 37 H 0.132 0.868 38 H 0.057 0.943 39 H 0.133 0.867 40 H 0.062 0.938 41 H 0.109 0.891 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 21.325 -8.436 3.179 23.152 hybrid contribution 0.216 1.778 -0.038 1.792 sum 21.542 -6.658 3.141 22.765 Atomic orbital electron populations 1.69801 1.08095 1.29116 1.50694 1.26060 0.96403 1.02557 0.96295 0.85406 0.79466 0.77036 0.79869 1.18278 1.20145 1.15590 1.18981 0.81464 0.94845 1.49995 0.92558 1.42059 1.05789 1.07593 1.68379 1.20837 0.90652 0.83344 0.81090 1.90540 1.71086 1.32469 1.54105 1.21843 0.90603 0.90819 1.04496 1.61523 1.17985 1.20741 1.24388 1.22034 0.87248 0.95279 1.02133 1.21669 0.89760 0.99450 1.04582 1.23475 0.89303 0.80405 0.73289 1.90716 1.63752 1.38375 1.51224 1.84513 1.38097 1.33082 1.76950 1.21664 0.96784 0.96538 0.87025 1.22447 1.03684 0.94688 0.97614 1.22663 0.87190 1.01500 0.90238 1.87883 1.45764 1.23466 1.74049 1.22638 1.02086 0.81067 0.95762 1.22922 0.99545 1.02381 0.97310 0.91248 0.77715 0.90379 0.86368 0.89939 0.91575 0.85702 0.86319 0.71038 0.93165 0.91878 0.88588 0.86846 0.94333 0.86742 0.93763 0.89081 0.90086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.37 13.96 21.66 0.30 -56.07 16 2 C -0.01 -0.82 5.50 84.93 0.47 -0.35 16 3 Si 0.96 38.76 27.74 68.60 1.90 40.66 16 4 H -0.26 -9.91 7.11 99.48 0.71 -9.21 16 5 H -0.28 -11.09 7.11 99.48 0.71 -10.38 16 6 H -0.23 -7.88 6.52 99.48 0.65 -7.23 16 7 C -0.32 -18.78 10.16 84.04 0.85 -17.92 16 8 H 0.06 3.89 7.39 -2.91 -0.02 3.87 16 9 N -0.60 -27.70 5.09 -306.99 -1.56 -29.27 16 10 C 0.45 19.93 7.12 87.66 0.62 20.55 16 11 O -0.60 -32.02 15.22 -3.05 -0.05 -32.07 16 12 C 0.05 1.60 5.39 85.56 0.46 2.06 16 13 N -0.52 -14.47 3.95 -874.86 -3.46 -17.93 16 14 C 0.06 1.28 3.85 86.30 0.33 1.61 16 15 C -0.12 -2.13 4.56 29.85 0.14 -1.99 16 16 C 0.49 9.01 8.33 71.24 0.59 9.60 16 17 O -0.55 -13.24 16.64 21.99 0.37 -12.88 16 18 O -0.51 -6.82 13.42 -51.48 -0.69 -7.51 16 19 C 0.09 2.39 1.62 45.03 0.07 2.47 16 20 C -0.15 -3.69 5.39 30.68 0.17 -3.52 16 21 C 0.06 1.41 6.84 72.01 0.49 1.90 16 22 O -0.39 -9.04 10.77 -148.98 -1.60 -10.65 16 23 C 0.06 1.23 6.84 72.01 0.49 1.72 16 24 C -0.18 -3.69 4.15 30.68 0.13 -3.56 16 25 H 0.28 15.33 8.31 -92.71 -0.77 14.56 16 26 H 0.39 15.02 5.76 -92.71 -0.53 14.48 16 27 H 0.08 1.94 7.69 -2.38 -0.02 1.93 16 28 H 0.12 2.97 7.71 -2.39 -0.02 2.96 16 29 H 0.08 1.80 7.46 -2.39 -0.02 1.78 16 30 H 0.07 1.28 5.46 -2.39 -0.01 1.27 16 31 H 0.13 2.08 4.50 -2.39 -0.01 2.07 16 32 H 0.12 2.21 8.14 -2.38 -0.02 2.19 16 33 H 0.43 2.04 9.10 -74.05 -0.67 1.37 16 34 H 0.05 1.75 6.83 -2.38 -0.02 1.73 16 35 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.10 2.00 4.31 -2.39 -0.01 1.99 16 37 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 38 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.04 0.94 8.14 -2.38 -0.02 0.92 16 41 H 0.09 1.65 5.10 -2.39 -0.01 1.64 16 42 H 0.08 1.51 7.79 -2.39 -0.02 1.49 16 Total: -1.00 -78.85 333.53 -0.16 -79.01 By element: Atomic # 1 Polarization: 34.33 SS G_CDS: -0.19 Total: 34.14 kcal Atomic # 6 Polarization: 7.74 SS G_CDS: 4.82 Total: 12.56 kcal Atomic # 7 Polarization: -98.55 SS G_CDS: -4.72 Total: -103.27 kcal Atomic # 8 Polarization: -61.13 SS G_CDS: -1.98 Total: -63.10 kcal Atomic # 14 Polarization: 38.76 SS G_CDS: 1.90 Total: 40.66 kcal Total: -78.85 -0.16 -79.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833067504.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.815 kcal (2) G-P(sol) polarization free energy of solvation -78.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds