Wall clock time and date at job start Fri Apr 10 2020 17:47:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52992 * 109.47223 * 2 1 4 4 C 1.52998 * 109.47258 * 120.00422 * 2 1 3 5 5 C 1.53004 * 109.46831 * 299.99889 * 4 2 1 6 6 C 1.50700 * 109.46723 * 180.02562 * 5 4 2 7 7 O 1.21282 * 120.00254 * 0.02562 * 6 5 4 8 8 N 1.34778 * 119.99819 * 179.97438 * 6 5 4 9 9 C 1.47021 * 125.64744 * 359.96801 * 8 6 5 10 10 C 1.54326 * 107.27002 * 181.08547 * 9 8 6 11 11 C 1.55151 * 102.94313 * 22.19392 * 10 9 8 12 12 O 1.42901 * 111.00842 * 82.56580 * 11 10 9 13 13 C 1.50698 * 111.00641 * 206.42337 * 11 10 9 14 14 H 1.07993 * 120.00138 * 112.19363 * 13 11 10 15 15 C 1.37875 * 119.99529 * 292.19405 * 13 11 10 16 16 N 1.31514 * 120.00358 * 359.97438 * 15 13 11 17 17 Si 1.86808 * 119.99716 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.47193 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.47196 * 119.99989 * 17 15 13 20 20 H 1.48495 * 109.46989 * 240.00003 * 17 15 13 21 21 C 1.47421 * 125.64805 * 179.97438 * 8 6 5 22 22 N 1.46507 * 109.46666 * 240.00012 * 2 1 3 23 23 O 1.21795 * 120.00214 * 239.99893 * 22 2 1 24 24 O 1.21800 * 119.99678 * 60.00451 * 22 2 1 25 25 H 1.09003 * 109.46749 * 299.99807 * 1 2 3 26 26 H 1.09005 * 109.47302 * 59.99770 * 1 2 3 27 27 H 1.08996 * 109.47463 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47502 * 180.02562 * 3 2 1 29 29 H 1.09005 * 109.47169 * 300.00311 * 3 2 1 30 30 H 1.09004 * 109.47123 * 59.99852 * 3 2 1 31 31 H 1.08995 * 109.47139 * 179.97438 * 4 2 1 32 32 H 1.09003 * 109.46976 * 59.99787 * 4 2 1 33 33 H 1.08995 * 109.47243 * 60.00082 * 5 4 2 34 34 H 1.08996 * 109.46877 * 299.99760 * 5 4 2 35 35 H 1.08996 * 109.88310 * 300.50411 * 9 8 6 36 36 H 1.09002 * 109.88672 * 61.51452 * 9 8 6 37 37 H 1.09000 * 110.72348 * 263.82382 * 10 9 8 38 38 H 1.09003 * 110.71705 * 140.55404 * 10 9 8 39 39 H 0.96708 * 113.99322 * 67.80350 * 12 11 10 40 40 H 0.96999 * 120.00046 * 179.97438 * 16 15 13 41 41 H 1.09002 * 110.36865 * 37.00989 * 21 8 6 42 42 H 1.09001 * 110.37117 * 274.68307 * 21 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.5300 -0.0001 2.4985 6 6 2.0329 -0.7102 3.7288 7 8 2.7309 -1.6958 3.6175 8 7 1.7079 -0.2495 4.9530 9 6 0.8751 0.9297 5.2314 10 6 0.7996 1.0856 6.7649 11 6 2.0572 0.3199 7.2543 12 8 3.2221 1.1437 7.1741 13 6 1.8617 -0.2005 8.6550 14 1 1.7915 -1.2636 8.8312 15 6 1.7724 0.6809 9.7116 16 7 1.8584 1.9755 9.4971 17 14 1.5293 0.0359 11.4478 18 1 1.4650 -1.4475 11.4204 19 1 2.6674 0.4658 12.2995 20 1 0.2630 0.5766 12.0039 21 6 2.1286 -0.8443 6.2346 22 7 2.0183 -0.6907 -1.1963 23 8 2.7185 -1.6809 -1.0846 24 8 1.7240 -0.2744 -2.3025 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.1300 -0.7217 1.2489 32 1 1.6767 -1.7490 1.2491 33 1 0.4401 -0.0001 2.4985 34 1 1.8934 1.0275 2.4985 35 1 1.3295 1.8169 4.7905 36 1 -0.1243 0.7828 4.8218 37 1 -0.1082 0.6256 7.1551 38 1 0.8534 2.1367 7.0487 39 1 3.2223 1.8860 7.7940 40 1 1.7952 2.5955 10.2403 41 1 3.1485 -1.2219 6.1609 42 1 1.4470 -1.6443 6.5235 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000844016706.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:47:42 Heat of formation + Delta-G solvation = -103.727514 kcal Electronic energy + Delta-G solvation = -25279.210388 eV Core-core repulsion = 21455.218451 eV Total energy + Delta-G solvation = -3823.991937 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 300.156 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.54641 -39.76815 -37.81939 -36.87708 -36.58914 -34.42988 -32.23583 -31.43421 -29.81053 -28.41501 -28.28627 -27.24147 -25.75433 -24.23270 -22.36930 -20.87201 -19.79350 -18.88376 -18.71817 -18.01047 -17.61598 -17.31923 -16.57666 -15.96112 -15.12894 -15.07071 -14.79759 -14.59386 -14.14677 -13.88294 -13.57435 -13.32859 -13.09696 -12.63466 -12.52358 -12.24931 -12.16889 -12.03948 -11.82752 -11.64984 -11.52508 -11.43094 -11.41985 -11.26601 -11.07598 -11.06704 -10.98739 -10.71551 -10.53831 -10.16042 -9.59998 -9.48352 -8.77873 -8.32460 -8.13560 -6.39578 -4.47289 0.46258 1.49532 2.88627 3.12120 3.21508 3.24119 3.29406 3.74659 3.81628 4.00206 4.18641 4.63662 4.70018 4.76993 4.83537 4.89480 4.91765 4.99961 5.04851 5.20728 5.34955 5.39101 5.42621 5.57240 5.66058 5.72983 5.84910 5.86931 6.14263 6.23278 6.32152 6.53073 6.74687 6.82848 7.17833 7.21038 7.51880 7.64170 7.88270 7.98420 8.46194 8.55882 9.22040 9.37072 10.68188 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.040092 B = 0.002932 C = 0.002863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.217502 B = 9548.696380 C = 9779.114714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.041 3.959 3 C -0.158 4.158 4 C -0.102 4.102 5 C -0.135 4.135 6 C 0.522 3.478 7 O -0.550 6.550 8 N -0.606 5.606 9 C 0.099 3.901 10 C -0.140 4.140 11 C 0.249 3.751 12 O -0.585 6.585 13 C -0.535 4.535 14 H 0.066 0.934 15 C 0.072 3.928 16 N -0.898 5.898 17 Si 0.904 3.096 18 H -0.271 1.271 19 H -0.281 1.281 20 H -0.282 1.282 21 C 0.119 3.881 22 N -0.013 5.013 23 O -0.154 6.154 24 O -0.170 6.170 25 H 0.101 0.899 26 H 0.084 0.916 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.101 0.899 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.096 0.904 34 H 0.098 0.902 35 H 0.058 0.942 36 H 0.053 0.947 37 H 0.069 0.931 38 H 0.083 0.917 39 H 0.386 0.614 40 H 0.269 0.731 41 H 0.072 0.928 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.571 2.545 -14.133 15.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.037 4.037 3 C -0.216 4.216 4 C -0.140 4.140 5 C -0.175 4.175 6 C 0.310 3.690 7 O -0.429 6.429 8 N -0.338 5.338 9 C -0.024 4.024 10 C -0.178 4.178 11 C 0.208 3.792 12 O -0.395 6.395 13 C -0.574 4.574 14 H 0.085 0.915 15 C -0.130 4.130 16 N -0.538 5.538 17 Si 0.732 3.268 18 H -0.195 1.195 19 H -0.207 1.207 20 H -0.208 1.208 21 C -0.003 4.003 22 N 0.509 4.491 23 O -0.376 6.376 24 O -0.388 6.388 25 H 0.120 0.880 26 H 0.103 0.897 27 H 0.093 0.907 28 H 0.094 0.906 29 H 0.103 0.897 30 H 0.120 0.880 31 H 0.113 0.887 32 H 0.112 0.888 33 H 0.115 0.885 34 H 0.116 0.884 35 H 0.076 0.924 36 H 0.071 0.929 37 H 0.087 0.913 38 H 0.102 0.898 39 H 0.238 0.762 40 H 0.079 0.921 41 H 0.090 0.910 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.306 2.132 -13.996 15.119 hybrid contribution -0.332 0.173 1.211 1.268 sum -5.638 2.306 -12.785 14.162 Atomic orbital electron populations 1.22265 0.88725 1.04858 1.05654 1.23654 0.99012 0.96304 0.84739 1.22271 1.03065 0.90568 1.05663 1.21558 1.03659 1.00119 0.88683 1.21724 1.02645 1.00898 0.92263 1.19891 0.80915 0.84711 0.83505 1.90706 1.38877 1.27031 1.86284 1.48613 1.50213 1.29206 1.05770 1.22178 0.92923 0.87332 0.99948 1.23212 1.01654 1.03220 0.89761 1.19589 0.82063 0.85871 0.91682 1.86100 1.43232 1.45409 1.64752 1.21516 1.50691 0.94047 0.91122 0.91543 1.24996 0.93475 0.94770 0.99784 1.69559 1.50293 1.01392 1.32542 0.86334 0.77852 0.79330 0.83316 1.19526 1.20701 1.20784 1.22418 1.00078 0.96679 0.81104 1.45027 0.99046 1.00735 1.04304 1.94570 1.33742 1.15554 1.93766 1.94500 1.60954 1.69017 1.14301 0.88047 0.89688 0.90657 0.90584 0.89691 0.88002 0.88689 0.88762 0.88549 0.88403 0.92384 0.92860 0.91275 0.89804 0.76182 0.92070 0.90991 0.91019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.09 8.22 37.16 0.31 -0.78 16 2 C 0.04 0.38 1.00 -131.82 -0.13 0.25 16 3 C -0.16 -1.15 8.22 37.15 0.31 -0.84 16 4 C -0.10 -1.14 2.83 -26.73 -0.08 -1.22 16 5 C -0.13 -1.48 4.19 -27.88 -0.12 -1.60 16 6 C 0.52 8.81 7.85 -10.99 -0.09 8.72 16 7 O -0.55 -11.32 16.24 5.56 0.09 -11.23 16 8 N -0.61 -10.95 3.33 -170.51 -0.57 -11.52 16 9 C 0.10 1.58 6.49 -3.06 -0.02 1.56 16 10 C -0.14 -2.76 5.64 -24.90 -0.14 -2.90 16 11 C 0.25 5.70 0.89 -89.61 -0.08 5.62 16 12 O -0.58 -14.38 13.18 -35.23 -0.46 -14.84 16 13 C -0.54 -13.38 8.25 -34.44 -0.28 -13.66 16 14 H 0.07 1.66 7.77 -52.49 -0.41 1.26 16 15 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 16 N -0.90 -22.19 10.79 55.43 0.60 -21.59 16 17 Si 0.90 19.51 29.54 -169.99 -5.02 14.49 16 18 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 19 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 20 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 21 C 0.12 2.53 6.08 -2.52 -0.02 2.51 16 22 N -0.01 -0.16 3.82 0.54 0.00 -0.16 16 23 O -0.15 -2.21 17.93 -29.46 -0.53 -2.74 16 24 O -0.17 -2.17 18.50 -29.46 -0.55 -2.72 16 25 H 0.10 0.51 6.43 -51.93 -0.33 0.17 16 26 H 0.08 0.53 8.03 -51.93 -0.42 0.12 16 27 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.08 0.55 8.03 -51.93 -0.42 0.14 16 30 H 0.10 0.56 6.43 -51.93 -0.33 0.22 16 31 H 0.09 1.23 8.02 -51.93 -0.42 0.81 16 32 H 0.09 1.18 8.02 -51.93 -0.42 0.76 16 33 H 0.10 0.82 6.43 -51.93 -0.33 0.48 16 34 H 0.10 0.90 6.43 -51.93 -0.33 0.57 16 35 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 1.37 8.03 -51.93 -0.42 0.95 16 38 H 0.08 1.74 7.85 -51.93 -0.41 1.33 16 39 H 0.39 9.60 6.93 45.56 0.32 9.91 16 40 H 0.27 6.37 8.31 -40.82 -0.34 6.03 16 41 H 0.07 1.66 8.04 -51.93 -0.42 1.24 16 42 H 0.07 1.48 8.01 -51.93 -0.42 1.06 16 LS Contribution 344.92 15.07 5.20 5.20 Total: -1.00 -29.26 344.92 -7.25 -36.50 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: -5.58 Total: 9.26 kcal Atomic # 6 Polarization: -0.22 SS G_CDS: -0.43 Total: -0.66 kcal Atomic # 7 Polarization: -33.30 SS G_CDS: 0.03 Total: -33.27 kcal Atomic # 8 Polarization: -30.08 SS G_CDS: -1.45 Total: -31.53 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -5.02 Total: 14.49 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -29.26 -7.25 -36.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844016706.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.224 kcal (2) G-P(sol) polarization free energy of solvation -29.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds