Wall clock time and date at job start Fri Apr 10 2020 17:47:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52992 * 109.47223 * 2 1 4 4 C 1.52998 * 109.47258 * 120.00422 * 2 1 3 5 5 C 1.53004 * 109.46831 * 299.99889 * 4 2 1 6 6 C 1.50700 * 109.46723 * 180.02562 * 5 4 2 7 7 O 1.21282 * 120.00254 * 0.02562 * 6 5 4 8 8 N 1.34778 * 119.99819 * 179.97438 * 6 5 4 9 9 C 1.47021 * 125.64744 * 359.96801 * 8 6 5 10 10 C 1.54326 * 107.27002 * 181.08547 * 9 8 6 11 11 C 1.55151 * 102.94313 * 22.19392 * 10 9 8 12 12 O 1.42901 * 111.00842 * 82.56580 * 11 10 9 13 13 C 1.50698 * 111.00641 * 206.42337 * 11 10 9 14 14 H 1.07993 * 120.00138 * 112.19363 * 13 11 10 15 15 C 1.37875 * 119.99529 * 292.19405 * 13 11 10 16 16 N 1.31514 * 120.00358 * 359.97438 * 15 13 11 17 17 Si 1.86808 * 119.99716 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.47193 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.47196 * 119.99989 * 17 15 13 20 20 H 1.48495 * 109.46989 * 240.00003 * 17 15 13 21 21 C 1.47421 * 125.64805 * 179.97438 * 8 6 5 22 22 N 1.46507 * 109.46666 * 240.00012 * 2 1 3 23 23 O 1.21795 * 120.00214 * 239.99893 * 22 2 1 24 24 O 1.21800 * 119.99678 * 60.00451 * 22 2 1 25 25 H 1.09003 * 109.46749 * 299.99807 * 1 2 3 26 26 H 1.09005 * 109.47302 * 59.99770 * 1 2 3 27 27 H 1.08996 * 109.47463 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47502 * 180.02562 * 3 2 1 29 29 H 1.09005 * 109.47169 * 300.00311 * 3 2 1 30 30 H 1.09004 * 109.47123 * 59.99852 * 3 2 1 31 31 H 1.08995 * 109.47139 * 179.97438 * 4 2 1 32 32 H 1.09003 * 109.46976 * 59.99787 * 4 2 1 33 33 H 1.08995 * 109.47243 * 60.00082 * 5 4 2 34 34 H 1.08996 * 109.46877 * 299.99760 * 5 4 2 35 35 H 1.08996 * 109.88310 * 300.50411 * 9 8 6 36 36 H 1.09002 * 109.88672 * 61.51452 * 9 8 6 37 37 H 1.09000 * 110.72348 * 263.82382 * 10 9 8 38 38 H 1.09003 * 110.71705 * 140.55404 * 10 9 8 39 39 H 0.96708 * 113.99322 * 67.80350 * 12 11 10 40 40 H 0.96999 * 120.00046 * 179.97438 * 16 15 13 41 41 H 1.09002 * 110.36865 * 37.00989 * 21 8 6 42 42 H 1.09001 * 110.37117 * 274.68307 * 21 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.5300 -0.0001 2.4985 6 6 2.0329 -0.7102 3.7288 7 8 2.7309 -1.6958 3.6175 8 7 1.7079 -0.2495 4.9530 9 6 0.8751 0.9297 5.2314 10 6 0.7996 1.0856 6.7649 11 6 2.0572 0.3199 7.2543 12 8 3.2221 1.1437 7.1741 13 6 1.8617 -0.2005 8.6550 14 1 1.7915 -1.2636 8.8312 15 6 1.7724 0.6809 9.7116 16 7 1.8584 1.9755 9.4971 17 14 1.5293 0.0359 11.4478 18 1 1.4650 -1.4475 11.4204 19 1 2.6674 0.4658 12.2995 20 1 0.2630 0.5766 12.0039 21 6 2.1286 -0.8443 6.2346 22 7 2.0183 -0.6907 -1.1963 23 8 2.7185 -1.6809 -1.0846 24 8 1.7240 -0.2744 -2.3025 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 3.1300 -0.7217 1.2489 32 1 1.6767 -1.7490 1.2491 33 1 0.4401 -0.0001 2.4985 34 1 1.8934 1.0275 2.4985 35 1 1.3295 1.8169 4.7905 36 1 -0.1243 0.7828 4.8218 37 1 -0.1082 0.6256 7.1551 38 1 0.8534 2.1367 7.0487 39 1 3.2223 1.8860 7.7940 40 1 1.7952 2.5955 10.2403 41 1 3.1485 -1.2219 6.1609 42 1 1.4470 -1.6443 6.5235 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000844016706.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:47:41 Heat of formation + Delta-G solvation = -123.469932 kcal Electronic energy + Delta-G solvation = -25280.066483 eV Core-core repulsion = 21455.218451 eV Total energy + Delta-G solvation = -3824.848033 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 300.156 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.44261 -41.14804 -39.20252 -37.94639 -37.54704 -36.11459 -34.14658 -32.53118 -31.26037 -29.97276 -28.79908 -28.04324 -27.33730 -25.50953 -23.74074 -21.89747 -21.41950 -20.12738 -19.65368 -19.23448 -18.88464 -18.47376 -17.78645 -17.14960 -16.94969 -16.55873 -15.96995 -15.79376 -15.33846 -15.02335 -14.73811 -14.29839 -14.12501 -13.91022 -13.68766 -13.57748 -13.25991 -13.17946 -13.10085 -13.05892 -12.66487 -12.63833 -12.56509 -12.47538 -12.34031 -12.26990 -12.23133 -12.01190 -12.00075 -11.84864 -11.31121 -10.96686 -10.64829 -10.15038 -9.58357 -8.27084 -6.40875 -0.54953 0.67982 1.39618 1.45009 1.53995 1.59415 2.00299 2.38725 2.90841 2.98798 3.16749 3.27194 3.62733 3.76285 3.89245 3.93025 4.05249 4.23735 4.33597 4.38710 4.42039 4.44044 4.47405 4.54935 4.59597 4.65828 4.73077 4.85976 4.90235 4.98281 4.99442 5.18605 5.26816 5.29967 5.44860 5.54751 5.77036 6.04845 6.48083 6.60012 6.64933 7.12587 7.30669 7.44831 8.79188 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.040092 B = 0.002932 C = 0.002863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 698.217502 B = 9548.696380 C = 9779.114714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.046 3.954 3 C -0.159 4.159 4 C -0.097 4.097 5 C -0.119 4.119 6 C 0.514 3.486 7 O -0.598 6.598 8 N -0.610 5.610 9 C 0.105 3.895 10 C -0.132 4.132 11 C 0.233 3.767 12 O -0.596 6.596 13 C -0.561 4.561 14 H 0.054 0.946 15 C 0.037 3.963 16 N -0.908 5.908 17 Si 0.959 3.041 18 H -0.275 1.275 19 H -0.282 1.282 20 H -0.274 1.274 21 C 0.123 3.877 22 N -0.010 5.010 23 O -0.217 6.217 24 O -0.151 6.151 25 H 0.132 0.868 26 H 0.097 0.903 27 H 0.067 0.933 28 H 0.064 0.936 29 H 0.097 0.903 30 H 0.131 0.869 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.137 0.863 34 H 0.128 0.872 35 H 0.080 0.920 36 H 0.099 0.901 37 H 0.065 0.935 38 H 0.072 0.928 39 H 0.381 0.619 40 H 0.272 0.728 41 H 0.040 0.960 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.886 4.644 -15.002 17.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.031 4.031 3 C -0.216 4.216 4 C -0.135 4.135 5 C -0.159 4.159 6 C 0.305 3.695 7 O -0.480 6.480 8 N -0.342 5.342 9 C -0.017 4.017 10 C -0.171 4.171 11 C 0.192 3.808 12 O -0.406 6.406 13 C -0.600 4.600 14 H 0.072 0.928 15 C -0.164 4.164 16 N -0.548 5.548 17 Si 0.785 3.215 18 H -0.200 1.200 19 H -0.208 1.208 20 H -0.199 1.199 21 C 0.000 4.000 22 N 0.508 4.492 23 O -0.426 6.426 24 O -0.379 6.379 25 H 0.151 0.849 26 H 0.115 0.885 27 H 0.086 0.914 28 H 0.083 0.917 29 H 0.116 0.884 30 H 0.149 0.851 31 H 0.087 0.913 32 H 0.092 0.908 33 H 0.155 0.845 34 H 0.146 0.854 35 H 0.099 0.901 36 H 0.117 0.883 37 H 0.083 0.917 38 H 0.091 0.909 39 H 0.233 0.767 40 H 0.082 0.918 41 H 0.059 0.941 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -7.581 4.169 -14.825 17.164 hybrid contribution 0.389 -0.440 1.462 1.576 sum -7.192 3.729 -13.362 15.626 Atomic orbital electron populations 1.22420 0.86128 1.05143 1.07805 1.23878 1.00636 0.96512 0.82124 1.22417 1.02524 0.88932 1.07757 1.21407 1.02136 0.99701 0.90283 1.21767 1.04819 1.01075 0.88232 1.20980 0.79858 0.84250 0.84455 1.90692 1.40965 1.29391 1.86925 1.48693 1.50654 1.29780 1.05036 1.22279 0.95114 0.87178 0.97113 1.22990 0.99487 1.01724 0.92851 1.19785 0.82936 0.86650 0.91380 1.86087 1.44579 1.45423 1.64526 1.21744 1.51631 0.93689 0.92912 0.92821 1.25574 0.93243 0.95074 1.02511 1.69607 1.50044 1.01783 1.33340 0.85497 0.77862 0.78461 0.79704 1.19986 1.20781 1.19898 1.22128 0.98450 0.96390 0.83053 1.45569 0.98278 1.00314 1.05005 1.94593 1.36381 1.17603 1.94041 1.94462 1.59750 1.68261 1.15438 0.84946 0.88457 0.91362 0.91720 0.88370 0.85101 0.91305 0.90766 0.84537 0.85374 0.90129 0.88291 0.91666 0.90910 0.76706 0.91787 0.94088 0.91135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.50 8.22 71.98 0.59 -0.91 16 2 C 0.05 0.73 1.00 3.60 0.00 0.73 16 3 C -0.16 -1.69 8.22 71.98 0.59 -1.10 16 4 C -0.10 -2.04 2.83 30.60 0.09 -1.96 16 5 C -0.12 -2.17 4.19 29.85 0.12 -2.04 16 6 C 0.51 16.61 7.85 87.66 0.69 17.30 16 7 O -0.60 -25.14 16.24 -3.04 -0.05 -25.19 16 8 N -0.61 -21.03 3.33 -811.75 -2.70 -23.73 16 9 C 0.10 2.93 6.49 86.73 0.56 3.50 16 10 C -0.13 -5.00 5.64 31.78 0.18 -4.82 16 11 C 0.23 10.74 0.89 -10.14 -0.01 10.73 16 12 O -0.60 -29.66 13.18 -148.98 -1.96 -31.62 16 13 C -0.56 -28.50 8.25 25.60 0.21 -28.29 16 14 H 0.05 2.77 7.77 -2.91 -0.02 2.75 16 15 C 0.04 1.83 5.30 84.65 0.45 2.27 16 16 N -0.91 -44.58 10.79 21.45 0.23 -44.35 16 17 Si 0.96 39.94 29.54 68.60 2.03 41.97 16 18 H -0.28 -11.55 7.11 99.48 0.71 -10.84 16 19 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 20 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 21 C 0.12 5.32 6.08 86.86 0.53 5.84 16 22 N -0.01 -0.23 3.82 -152.21 -0.58 -0.81 16 23 O -0.22 -6.49 17.93 18.89 0.34 -6.15 16 24 O -0.15 -3.61 18.50 18.89 0.35 -3.26 16 25 H 0.13 0.46 6.43 -2.39 -0.02 0.45 16 26 H 0.10 0.76 8.03 -2.38 -0.02 0.74 16 27 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.10 0.85 8.03 -2.38 -0.02 0.83 16 30 H 0.13 0.65 6.43 -2.39 -0.02 0.64 16 31 H 0.07 1.81 8.02 -2.39 -0.02 1.79 16 32 H 0.07 1.87 8.02 -2.39 -0.02 1.85 16 33 H 0.14 1.46 6.43 -2.39 -0.02 1.45 16 34 H 0.13 1.65 6.43 -2.39 -0.02 1.63 16 35 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.06 2.49 8.03 -2.39 -0.02 2.47 16 38 H 0.07 2.91 7.85 -2.39 -0.02 2.89 16 39 H 0.38 19.21 6.93 -74.05 -0.51 18.70 16 40 H 0.27 12.71 8.31 -92.71 -0.77 11.94 16 41 H 0.04 1.98 8.04 -2.39 -0.02 1.96 16 42 H 0.07 3.00 8.01 -2.39 -0.02 2.98 16 Total: -1.00 -67.66 344.92 2.18 -65.48 By element: Atomic # 1 Polarization: 25.89 SS G_CDS: 0.52 Total: 26.41 kcal Atomic # 6 Polarization: -2.76 SS G_CDS: 4.01 Total: 1.25 kcal Atomic # 7 Polarization: -65.84 SS G_CDS: -3.05 Total: -68.89 kcal Atomic # 8 Polarization: -64.89 SS G_CDS: -1.33 Total: -66.21 kcal Atomic # 14 Polarization: 39.94 SS G_CDS: 2.03 Total: 41.97 kcal Total: -67.66 2.18 -65.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000844016706.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.994 kcal (2) G-P(sol) polarization free energy of solvation -67.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds