Wall clock time and date at job start Fri Apr 10 2020 17:47:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 120.00077 * 2 1 4 4 H 1.48500 * 109.46999 * 269.99315 * 3 2 1 5 5 H 1.48493 * 109.47448 * 29.99482 * 3 2 1 6 6 H 1.48505 * 109.46977 * 149.99818 * 3 2 1 7 7 C 1.37875 * 119.99721 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99630 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00281 * 0.02562 * 7 2 1 10 10 O 1.42899 * 109.47163 * 179.97438 * 9 7 2 11 11 C 1.42905 * 113.99778 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.47079 * 180.02562 * 11 10 9 13 13 O 1.42898 * 109.46919 * 64.99630 * 12 11 10 14 14 C 1.42903 * 113.99797 * 180.02562 * 13 12 11 15 15 C 1.52992 * 109.47178 * 179.97438 * 14 13 12 16 16 O 1.45206 * 109.47216 * 65.00182 * 15 14 13 17 17 C 1.34226 * 117.00125 * 179.97438 * 16 15 14 18 18 O 1.20824 * 120.00277 * 359.97438 * 17 16 15 19 19 C 1.50699 * 119.99879 * 180.02562 * 17 16 15 20 20 H 1.09005 * 110.73791 * 300.70664 * 19 17 16 21 21 C 1.54981 * 110.83564 * 177.26910 * 19 17 16 22 22 C 1.54503 * 103.64970 * 204.86485 * 21 19 17 23 23 C 1.51452 * 106.93617 * 22.83396 * 22 21 19 24 24 O 1.20768 * 126.33500 * 180.55310 * 23 22 21 25 25 C 1.51840 * 107.32279 * 0.53135 * 23 22 21 26 26 H 0.97007 * 119.99648 * 0.02562 * 1 2 3 27 27 H 1.08997 * 109.46854 * 59.99681 * 9 7 2 28 28 H 1.08997 * 109.47005 * 299.99947 * 9 7 2 29 29 H 1.09004 * 109.47054 * 299.99711 * 11 10 9 30 30 H 1.09000 * 109.47187 * 59.99767 * 11 10 9 31 31 H 1.08997 * 109.47011 * 184.99710 * 12 11 10 32 32 H 1.09005 * 109.46847 * 304.99836 * 12 11 10 33 33 H 1.08998 * 109.47133 * 300.00285 * 14 13 12 34 34 H 1.09009 * 109.46982 * 60.00047 * 14 13 12 35 35 H 1.09003 * 109.47285 * 184.99612 * 15 14 13 36 36 H 1.08992 * 109.47499 * 304.99975 * 15 14 13 37 37 H 1.09006 * 110.56985 * 323.27068 * 21 19 17 38 38 H 1.09004 * 110.56945 * 86.13908 * 21 19 17 39 39 H 1.08998 * 109.79718 * 263.54189 * 22 21 19 40 40 H 1.09002 * 110.12064 * 142.30638 * 22 21 19 41 41 H 1.08998 * 110.44275 * 217.47525 * 25 23 22 42 42 H 1.08998 * 110.44323 * 94.94490 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 8 2.1796 -3.5853 0.0005 11 6 1.5649 -4.8754 0.0000 12 6 2.6479 -5.9563 0.0006 13 8 3.3863 -5.8898 1.2222 14 6 4.4286 -6.8620 1.3249 15 6 5.1486 -6.6982 2.6649 16 8 4.2308 -7.0032 3.7480 17 6 4.7100 -6.9071 4.9981 18 8 5.8584 -6.5795 5.1814 19 6 3.8159 -7.2090 6.1730 20 1 2.9487 -6.5486 6.1778 21 6 4.6001 -7.0987 7.5052 22 6 3.8113 -8.0126 8.4694 23 6 3.0451 -8.9998 7.6138 24 8 2.3065 -9.8687 8.0112 25 6 3.3770 -8.6944 6.1639 26 1 -0.4850 0.8401 -0.0004 27 1 0.6246 -2.5570 -0.8896 28 1 0.6240 -2.5567 0.8903 29 1 0.9445 -4.9827 0.8898 30 1 0.9450 -4.9822 -0.8903 31 1 2.1819 -6.9375 -0.0893 32 1 3.3220 -5.7956 -0.8407 33 1 4.0000 -7.8622 1.2622 34 1 5.1397 -6.7197 0.5110 35 1 5.9985 -7.3794 2.7063 36 1 5.5006 -5.6716 2.7651 37 1 5.6194 -7.4646 7.3810 38 1 4.6027 -6.0694 7.8640 39 1 3.1174 -7.4146 9.0601 40 1 4.4981 -8.5447 9.1277 41 1 2.4963 -8.8273 5.5356 42 1 4.1920 -9.3301 5.8179 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000861319395.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:47:54 Heat of formation + Delta-G solvation = -227.791245 kcal Electronic energy + Delta-G solvation = -23650.714093 eV Core-core repulsion = 19789.049597 eV Total energy + Delta-G solvation = -3861.664495 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 300.150 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.01392 -39.80839 -38.14940 -37.04532 -36.30259 -36.02923 -32.75041 -31.26218 -29.94218 -28.85991 -27.77598 -26.74856 -23.86228 -22.42326 -22.31576 -21.92449 -20.52149 -19.89888 -18.15963 -17.29716 -16.98278 -16.69397 -16.41062 -16.14670 -15.97340 -15.38927 -15.08644 -14.92374 -14.48863 -14.36118 -14.13751 -14.11683 -13.76602 -13.28337 -13.04534 -12.74459 -12.40664 -12.10700 -12.03322 -11.87671 -11.69015 -11.62756 -11.32643 -11.17458 -10.85798 -10.81859 -10.77110 -10.70079 -10.50041 -9.99905 -9.97056 -9.52153 -9.08758 -8.82181 -8.16096 -6.09693 -4.11035 1.44173 1.94552 2.38676 3.31229 3.36086 3.42058 3.63418 3.68429 3.78850 4.13946 4.35685 4.37313 4.63144 4.68567 4.73675 4.77052 4.81010 4.85527 4.97869 5.14031 5.19173 5.25101 5.26788 5.31985 5.37333 5.41336 5.53871 5.57237 5.60900 5.67227 6.00092 6.01024 6.21161 6.24499 6.98988 7.10493 7.30086 7.44467 7.52514 7.81101 8.16667 8.59147 9.02403 9.53661 11.01964 Molecular weight = 300.15amu Principal moments of inertia in cm(-1) A = 0.014644 B = 0.002554 C = 0.002421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1911.538683 B =10960.376248 C =11564.669525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.055 3.945 3 Si 0.908 3.092 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.513 4.513 8 H 0.066 0.934 9 C 0.194 3.806 10 O -0.390 6.390 11 C 0.063 3.937 12 C 0.068 3.932 13 O -0.368 6.368 14 C 0.061 3.939 15 C 0.070 3.930 16 O -0.343 6.343 17 C 0.472 3.528 18 O -0.506 6.506 19 C -0.086 4.086 20 H 0.126 0.874 21 C -0.105 4.105 22 C -0.184 4.184 23 C 0.374 3.626 24 O -0.441 6.441 25 C -0.172 4.172 26 H 0.264 0.736 27 H 0.004 0.996 28 H 0.006 0.994 29 H 0.046 0.954 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.057 0.943 34 H 0.072 0.928 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.105 0.895 40 H 0.105 0.895 41 H 0.109 0.891 42 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.735 -19.663 11.431 24.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.146 4.146 3 Si 0.735 3.265 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.551 4.551 8 H 0.084 0.916 9 C 0.120 3.880 10 O -0.309 6.309 11 C -0.015 4.015 12 C -0.008 4.008 13 O -0.287 6.287 14 C -0.016 4.016 15 C -0.003 4.003 16 O -0.259 6.259 17 C 0.315 3.685 18 O -0.394 6.394 19 C -0.106 4.106 20 H 0.143 0.857 21 C -0.142 4.142 22 C -0.222 4.222 23 C 0.248 3.752 24 O -0.313 6.313 25 C -0.210 4.210 26 H 0.073 0.927 27 H 0.022 0.978 28 H 0.024 0.976 29 H 0.064 0.936 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.090 0.910 35 H 0.102 0.898 36 H 0.103 0.897 37 H 0.108 0.892 38 H 0.107 0.893 39 H 0.123 0.877 40 H 0.123 0.877 41 H 0.127 0.873 42 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 8.697 -19.730 11.802 24.581 hybrid contribution 0.249 0.852 -0.432 0.987 sum 8.946 -18.878 11.370 23.785 Atomic orbital electron populations 1.69967 1.06100 1.27127 1.50691 1.24953 0.94987 0.99434 0.95187 0.86334 0.79703 0.82242 0.78206 1.20479 1.21069 1.19603 1.21060 0.94078 0.89363 1.50633 0.91560 1.20206 0.88788 0.83648 0.95352 1.87909 1.35197 1.12661 1.95169 1.22257 0.93697 0.85623 0.99885 1.22595 0.94076 0.97382 0.86744 1.88099 1.47073 1.54912 1.38619 1.22501 0.91330 0.93115 0.94657 1.23174 0.90916 1.02888 0.83371 1.86554 1.44600 1.79647 1.15095 1.23269 0.87179 0.73749 0.84353 1.90677 1.19243 1.43309 1.86181 1.21930 0.99271 0.98207 0.91152 0.85659 1.22337 0.99463 1.01216 0.91203 1.22753 1.00956 0.98661 0.99816 1.24812 0.77145 0.81202 0.92030 1.90461 1.30302 1.29898 1.80665 1.22853 1.04848 0.95304 0.97978 0.92673 0.97776 0.97631 0.93601 0.92931 0.92671 0.92678 0.92487 0.90966 0.89779 0.89745 0.89196 0.89261 0.87726 0.87724 0.87296 0.87261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.17 13.29 55.43 0.74 -26.44 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.91 22.07 29.54 -169.99 -5.02 17.05 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 5 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.51 -15.40 9.43 -34.44 -0.32 -15.72 16 8 H 0.07 1.98 7.81 -52.48 -0.41 1.57 16 9 C 0.19 5.44 5.69 36.00 0.20 5.64 16 10 O -0.39 -9.69 10.29 -40.09 -0.41 -10.11 16 11 C 0.06 1.18 6.32 37.16 0.23 1.42 16 12 C 0.07 1.02 6.32 37.16 0.23 1.25 16 13 O -0.37 -5.97 10.28 -48.79 -0.50 -6.47 16 14 C 0.06 0.68 6.33 37.15 0.24 0.92 16 15 C 0.07 0.79 5.84 37.15 0.22 1.00 16 16 O -0.34 -4.10 10.19 -42.01 -0.43 -4.53 16 17 C 0.47 5.14 7.26 36.00 0.26 5.40 16 18 O -0.51 -6.65 15.50 -18.75 -0.29 -6.94 16 19 C -0.09 -0.64 3.42 -89.73 -0.31 -0.95 16 20 H 0.13 0.83 8.14 -51.93 -0.42 0.41 16 21 C -0.10 -0.63 5.97 -24.90 -0.15 -0.78 16 22 C -0.18 -0.95 6.70 -26.72 -0.18 -1.13 16 23 C 0.37 2.83 7.88 -28.10 -0.22 2.61 16 24 O -0.44 -4.98 17.99 5.99 0.11 -4.87 16 25 C -0.17 -1.13 6.17 -26.32 -0.16 -1.29 16 26 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 27 H 0.00 0.13 8.14 -51.93 -0.42 -0.30 16 28 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 29 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.68 8.14 -51.92 -0.42 0.26 16 35 H 0.08 0.74 8.13 -51.93 -0.42 0.32 16 36 H 0.08 1.08 8.13 -51.93 -0.42 0.66 16 37 H 0.09 0.59 7.46 -51.93 -0.39 0.21 16 38 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.11 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.11 0.63 8.04 -51.93 -0.42 0.21 16 LS Contribution 364.92 15.07 5.50 5.50 Total: -1.00 -36.38 364.92 -7.05 -43.44 By element: Atomic # 1 Polarization: 0.16 SS G_CDS: -6.69 Total: -6.53 kcal Atomic # 6 Polarization: -0.05 SS G_CDS: -0.05 Total: -0.11 kcal Atomic # 7 Polarization: -27.17 SS G_CDS: 0.74 Total: -26.44 kcal Atomic # 8 Polarization: -31.39 SS G_CDS: -1.52 Total: -32.92 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -36.38 -7.05 -43.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000861319395.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -184.355 kcal (2) G-P(sol) polarization free energy of solvation -36.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -220.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -227.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds