Wall clock time and date at job start Fri Apr 10 2020 17:47:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 120.00077 * 2 1 4 4 H 1.48500 * 109.46999 * 269.99315 * 3 2 1 5 5 H 1.48493 * 109.47448 * 29.99482 * 3 2 1 6 6 H 1.48505 * 109.46977 * 149.99818 * 3 2 1 7 7 C 1.37875 * 119.99721 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99630 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00281 * 0.02562 * 7 2 1 10 10 O 1.42899 * 109.47163 * 179.97438 * 9 7 2 11 11 C 1.42905 * 113.99778 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.47079 * 180.02562 * 11 10 9 13 13 O 1.42898 * 109.46919 * 64.99630 * 12 11 10 14 14 C 1.42903 * 113.99797 * 180.02562 * 13 12 11 15 15 C 1.52992 * 109.47178 * 179.97438 * 14 13 12 16 16 O 1.45206 * 109.47216 * 65.00182 * 15 14 13 17 17 C 1.34226 * 117.00125 * 179.97438 * 16 15 14 18 18 O 1.20824 * 120.00277 * 359.97438 * 17 16 15 19 19 C 1.50699 * 119.99879 * 180.02562 * 17 16 15 20 20 H 1.09005 * 110.73791 * 300.70664 * 19 17 16 21 21 C 1.54981 * 110.83564 * 177.26910 * 19 17 16 22 22 C 1.54503 * 103.64970 * 204.86485 * 21 19 17 23 23 C 1.51452 * 106.93617 * 22.83396 * 22 21 19 24 24 O 1.20768 * 126.33500 * 180.55310 * 23 22 21 25 25 C 1.51840 * 107.32279 * 0.53135 * 23 22 21 26 26 H 0.97007 * 119.99648 * 0.02562 * 1 2 3 27 27 H 1.08997 * 109.46854 * 59.99681 * 9 7 2 28 28 H 1.08997 * 109.47005 * 299.99947 * 9 7 2 29 29 H 1.09004 * 109.47054 * 299.99711 * 11 10 9 30 30 H 1.09000 * 109.47187 * 59.99767 * 11 10 9 31 31 H 1.08997 * 109.47011 * 184.99710 * 12 11 10 32 32 H 1.09005 * 109.46847 * 304.99836 * 12 11 10 33 33 H 1.08998 * 109.47133 * 300.00285 * 14 13 12 34 34 H 1.09009 * 109.46982 * 60.00047 * 14 13 12 35 35 H 1.09003 * 109.47285 * 184.99612 * 15 14 13 36 36 H 1.08992 * 109.47499 * 304.99975 * 15 14 13 37 37 H 1.09006 * 110.56985 * 323.27068 * 21 19 17 38 38 H 1.09004 * 110.56945 * 86.13908 * 21 19 17 39 39 H 1.08998 * 109.79718 * 263.54189 * 22 21 19 40 40 H 1.09002 * 110.12064 * 142.30638 * 22 21 19 41 41 H 1.08998 * 110.44275 * 217.47525 * 25 23 22 42 42 H 1.08998 * 110.44323 * 94.94490 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4467 2.6527 0.6999 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 8 2.1796 -3.5853 0.0005 11 6 1.5649 -4.8754 0.0000 12 6 2.6479 -5.9563 0.0006 13 8 3.3863 -5.8898 1.2222 14 6 4.4286 -6.8620 1.3249 15 6 5.1486 -6.6982 2.6649 16 8 4.2308 -7.0032 3.7480 17 6 4.7100 -6.9071 4.9981 18 8 5.8584 -6.5795 5.1814 19 6 3.8159 -7.2090 6.1730 20 1 2.9487 -6.5486 6.1778 21 6 4.6001 -7.0987 7.5052 22 6 3.8113 -8.0126 8.4694 23 6 3.0451 -8.9998 7.6138 24 8 2.3065 -9.8687 8.0112 25 6 3.3770 -8.6944 6.1639 26 1 -0.4850 0.8401 -0.0004 27 1 0.6246 -2.5570 -0.8896 28 1 0.6240 -2.5567 0.8903 29 1 0.9445 -4.9827 0.8898 30 1 0.9450 -4.9822 -0.8903 31 1 2.1819 -6.9375 -0.0893 32 1 3.3220 -5.7956 -0.8407 33 1 4.0000 -7.8622 1.2622 34 1 5.1397 -6.7197 0.5110 35 1 5.9985 -7.3794 2.7063 36 1 5.5006 -5.6716 2.7651 37 1 5.6194 -7.4646 7.3810 38 1 4.6027 -6.0694 7.8640 39 1 3.1174 -7.4146 9.0601 40 1 4.4981 -8.5447 9.1277 41 1 2.4963 -8.8273 5.5356 42 1 4.1920 -9.3301 5.8179 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000861319395.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:47:54 Heat of formation + Delta-G solvation = -251.875045 kcal Electronic energy + Delta-G solvation = -23651.758445 eV Core-core repulsion = 19789.049597 eV Total energy + Delta-G solvation = -3862.708847 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 300.150 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.82099 -40.52772 -39.35585 -38.28480 -37.60117 -36.84997 -34.94728 -32.33908 -30.77773 -30.05376 -28.77987 -28.37323 -24.62229 -24.55101 -23.37511 -23.12860 -21.24093 -20.48989 -18.95469 -18.67295 -18.27398 -17.80540 -17.61068 -17.45454 -16.92341 -16.64073 -16.27616 -16.07963 -15.85622 -15.68718 -15.50456 -14.82751 -14.59739 -14.47851 -14.14713 -13.82918 -13.59691 -13.35267 -13.14704 -12.91544 -12.75235 -12.72027 -12.55509 -12.47607 -12.31071 -12.18997 -11.89951 -11.80733 -11.61440 -11.57275 -11.30194 -10.89186 -10.60887 -10.55368 -10.24587 -8.33275 -6.45722 0.83669 1.09861 1.39153 1.42250 1.54440 1.61197 2.34204 2.66805 3.00311 3.06799 3.19536 3.21567 3.57229 3.71060 3.88047 4.06639 4.09908 4.19451 4.19639 4.24141 4.24858 4.29490 4.34915 4.51651 4.59660 4.63535 4.68768 4.72442 4.77105 4.77842 4.89643 4.96096 5.10166 5.16781 5.18293 5.39632 5.53551 5.94940 6.26564 6.39870 6.53159 6.66303 6.81319 7.26270 8.79169 Molecular weight = 300.15amu Principal moments of inertia in cm(-1) A = 0.014644 B = 0.002554 C = 0.002421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1911.538683 B =10960.376248 C =11564.669525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.006 3.994 3 Si 0.984 3.016 4 H -0.265 1.265 5 H -0.273 1.273 6 H -0.266 1.266 7 C -0.550 4.550 8 H 0.059 0.941 9 C 0.208 3.792 10 O -0.408 6.408 11 C 0.049 3.951 12 C 0.075 3.925 13 O -0.408 6.408 14 C 0.058 3.942 15 C 0.066 3.934 16 O -0.354 6.354 17 C 0.470 3.530 18 O -0.532 6.532 19 C -0.085 4.085 20 H 0.134 0.866 21 C -0.100 4.100 22 C -0.174 4.174 23 C 0.378 3.622 24 O -0.483 6.483 25 C -0.167 4.167 26 H 0.271 0.729 27 H -0.009 1.009 28 H -0.017 1.017 29 H 0.041 0.959 30 H 0.070 0.930 31 H 0.098 0.902 32 H 0.062 0.938 33 H 0.083 0.917 34 H 0.092 0.908 35 H 0.110 0.890 36 H 0.060 0.940 37 H 0.085 0.915 38 H 0.095 0.905 39 H 0.118 0.882 40 H 0.121 0.879 41 H 0.110 0.890 42 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.652 -19.847 11.553 24.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.192 4.192 3 Si 0.806 3.194 4 H -0.190 1.190 5 H -0.198 1.198 6 H -0.191 1.191 7 C -0.588 4.588 8 H 0.078 0.922 9 C 0.133 3.867 10 O -0.328 6.328 11 C -0.028 4.028 12 C -0.001 4.001 13 O -0.328 6.328 14 C -0.018 4.018 15 C -0.008 4.008 16 O -0.270 6.270 17 C 0.315 3.685 18 O -0.422 6.422 19 C -0.104 4.104 20 H 0.152 0.848 21 C -0.137 4.137 22 C -0.211 4.211 23 C 0.256 3.744 24 O -0.358 6.358 25 C -0.205 4.205 26 H 0.080 0.920 27 H 0.008 0.992 28 H 0.001 0.999 29 H 0.059 0.941 30 H 0.088 0.912 31 H 0.115 0.885 32 H 0.080 0.920 33 H 0.101 0.899 34 H 0.109 0.891 35 H 0.128 0.872 36 H 0.079 0.921 37 H 0.103 0.897 38 H 0.114 0.886 39 H 0.136 0.864 40 H 0.139 0.861 41 H 0.128 0.872 42 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 9.618 -19.936 11.913 25.137 hybrid contribution -0.042 0.824 -0.483 0.957 sum 9.576 -19.112 11.430 24.240 Atomic orbital electron populations 1.70068 1.07728 1.28704 1.50440 1.25974 0.96006 1.03402 0.93857 0.85177 0.78303 0.76942 0.78954 1.19035 1.19769 1.19068 1.21387 0.94033 0.90970 1.52362 0.92246 1.19830 0.88623 0.84724 0.93498 1.87857 1.35373 1.14337 1.95220 1.22686 0.95697 0.83962 1.00475 1.22585 0.93351 0.97471 0.86692 1.88035 1.48580 1.57031 1.39154 1.22757 0.90742 0.93217 0.95050 1.23280 0.91727 1.02236 0.83535 1.86563 1.45122 1.79611 1.15709 1.23895 0.87230 0.72793 0.84614 1.90660 1.20501 1.44609 1.86424 1.22040 0.99147 0.98883 0.90356 0.84817 1.22331 0.99091 1.01813 0.90478 1.22723 1.00992 0.97969 0.99445 1.25103 0.76023 0.80501 0.92760 1.90455 1.32272 1.31780 1.81279 1.22832 1.05207 0.94780 0.97662 0.91965 0.99176 0.99910 0.94112 0.91217 0.88458 0.91967 0.89941 0.89053 0.87239 0.92103 0.89656 0.88632 0.86352 0.86128 0.87201 0.86271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.54 13.29 21.45 0.28 -56.26 16 2 C 0.01 0.36 5.46 84.65 0.46 0.82 16 3 Si 0.98 44.96 29.54 68.60 2.03 46.98 16 4 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 5 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 6 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 7 C -0.55 -33.64 9.43 25.60 0.24 -33.40 16 8 H 0.06 3.62 7.81 -2.91 -0.02 3.59 16 9 C 0.21 12.04 5.69 71.24 0.41 12.45 16 10 O -0.41 -20.72 10.29 -144.34 -1.49 -22.21 16 11 C 0.05 1.82 6.32 71.98 0.45 2.27 16 12 C 0.07 2.10 6.32 71.98 0.45 2.56 16 13 O -0.41 -12.84 10.28 -136.02 -1.40 -14.24 16 14 C 0.06 1.20 6.33 71.98 0.46 1.66 16 15 C 0.07 1.42 5.84 71.98 0.42 1.84 16 16 O -0.35 -8.25 10.19 -48.74 -0.50 -8.74 16 17 C 0.47 10.00 7.26 71.24 0.52 10.52 16 18 O -0.53 -13.85 15.50 21.97 0.34 -13.51 16 19 C -0.09 -1.18 3.42 -10.22 -0.03 -1.22 16 20 H 0.13 1.65 8.14 -2.38 -0.02 1.63 16 21 C -0.10 -1.06 5.97 31.78 0.19 -0.87 16 22 C -0.17 -1.48 6.70 30.60 0.20 -1.27 16 23 C 0.38 5.34 7.88 29.71 0.23 5.57 16 24 O -0.48 -10.73 17.99 -1.47 -0.03 -10.76 16 25 C -0.17 -2.01 6.17 30.86 0.19 -1.82 16 26 H 0.27 15.22 8.31 -92.70 -0.77 14.45 16 27 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 28 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 29 H 0.04 1.55 8.14 -2.38 -0.02 1.53 16 30 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 31 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.06 1.64 8.14 -2.38 -0.02 1.62 16 33 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.09 1.52 8.14 -2.38 -0.02 1.50 16 35 H 0.11 1.77 8.13 -2.39 -0.02 1.75 16 36 H 0.06 1.59 8.13 -2.39 -0.02 1.57 16 37 H 0.08 1.02 7.46 -2.38 -0.02 1.01 16 38 H 0.10 0.92 8.14 -2.39 -0.02 0.91 16 39 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 41 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 42 H 0.12 1.22 8.04 -2.39 -0.02 1.20 16 Total: -1.00 -79.87 364.92 4.44 -75.42 By element: Atomic # 1 Polarization: 3.20 SS G_CDS: 1.00 Total: 4.20 kcal Atomic # 6 Polarization: -5.09 SS G_CDS: 4.20 Total: -0.89 kcal Atomic # 7 Polarization: -56.54 SS G_CDS: 0.28 Total: -56.26 kcal Atomic # 8 Polarization: -66.39 SS G_CDS: -3.07 Total: -69.46 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.98 kcal Total: -79.87 4.44 -75.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000861319395.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -176.450 kcal (2) G-P(sol) polarization free energy of solvation -79.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -256.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -251.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds