Wall clock time and date at job start Fri Apr 10 2020 17:47:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.53006 * 109.46772 * 2 1 4 4 C 1.52996 * 109.47118 * 240.00130 * 2 1 3 5 5 O 1.45202 * 109.46732 * 119.99826 * 2 1 3 6 6 C 1.34639 * 117.00005 * 60.00413 * 5 2 1 7 7 O 1.21504 * 119.99701 * 359.97438 * 6 5 2 8 8 N 1.34779 * 119.99768 * 179.97438 * 6 5 2 9 9 C 1.46494 * 119.99750 * 180.02562 * 8 6 5 10 10 C 1.53000 * 109.47188 * 180.02562 * 9 8 6 11 11 N 1.46507 * 112.99688 * 314.66718 * 10 9 8 12 12 C 1.34775 * 119.99876 * 177.84398 * 11 10 9 13 13 O 1.21683 * 120.00208 * 359.97438 * 12 11 10 14 14 C 1.46373 * 119.99634 * 179.97438 * 12 11 10 15 15 H 1.08002 * 120.00452 * 0.02562 * 14 12 11 16 16 C 1.40050 * 119.99716 * 179.71971 * 14 12 11 17 17 N 1.30674 * 120.00151 * 0.28083 * 16 14 12 18 18 Si 1.86803 * 119.99913 * 180.27503 * 16 14 12 19 19 H 1.48508 * 109.46742 * 90.00451 * 18 16 14 20 20 H 1.48501 * 109.47216 * 210.00308 * 18 16 14 21 21 H 1.48499 * 109.47135 * 330.00649 * 18 16 14 22 22 C 1.54038 * 113.92769 * 86.59598 * 10 9 8 23 23 O 1.44182 * 85.51469 * 136.81959 * 22 10 9 24 24 C 1.44171 * 93.34221 * 335.80829 * 23 22 10 25 25 H 1.09001 * 109.47094 * 300.00143 * 1 2 3 26 26 H 1.08998 * 109.46951 * 60.00086 * 1 2 3 27 27 H 1.09001 * 109.46874 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46387 * 179.97438 * 3 2 1 29 29 H 1.08998 * 109.47313 * 299.99693 * 3 2 1 30 30 H 1.08997 * 109.46736 * 60.00269 * 3 2 1 31 31 H 1.09007 * 109.46861 * 299.99705 * 4 2 1 32 32 H 1.08998 * 109.47386 * 60.00050 * 4 2 1 33 33 H 1.09000 * 109.46705 * 180.02562 * 4 2 1 34 34 H 0.97000 * 120.00167 * 0.02562 * 8 6 5 35 35 H 1.08992 * 109.47430 * 59.99906 * 9 8 6 36 36 H 1.09010 * 109.47131 * 299.99713 * 9 8 6 37 37 H 0.97000 * 119.99601 * 357.83737 * 11 10 9 38 38 H 0.97005 * 120.00029 * 179.97438 * 17 16 14 39 39 H 1.08997 * 113.86336 * 250.96159 * 22 10 9 40 40 H 1.08994 * 113.86326 * 22.67180 * 22 10 9 41 41 H 1.08997 * 113.86562 * 270.04669 * 24 23 22 42 42 H 1.09003 * 113.86758 * 138.34091 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6523 -1.9723 1.3384 7 8 0.9510 -2.5094 0.5040 8 7 2.0680 -2.6657 2.4168 9 6 1.6749 -4.0671 2.5827 10 6 2.2748 -4.6150 3.8791 11 7 3.6839 -4.2546 4.0549 12 6 4.3407 -4.6277 5.1711 13 8 3.7632 -5.2636 6.0330 14 6 5.7487 -4.2681 5.3464 15 1 6.2611 -3.7034 4.5816 16 6 6.4296 -4.6508 6.5089 17 7 5.8095 -5.3336 7.4345 18 14 8.2243 -4.1852 6.7361 19 1 8.3116 -2.8682 7.4168 20 1 8.9022 -5.2157 7.5631 21 1 8.8858 -4.1014 5.4092 22 6 1.4071 -4.3593 5.1260 23 8 1.7189 -5.7210 5.4829 24 6 1.9800 -6.1078 4.1188 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1301 1.4425 0.0005 29 1 1.6767 1.9564 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6768 -1.7489 -1.2492 32 1 1.6768 -0.2074 -2.1392 33 1 3.1301 -0.7216 -1.2489 34 1 2.6276 -2.2368 3.0830 35 1 2.0414 -4.6498 1.7376 36 1 0.5880 -4.1367 2.6279 37 1 4.1441 -3.7475 3.3679 38 1 6.2812 -5.5990 8.2395 39 1 1.8233 -3.6183 5.8084 40 1 0.3534 -4.1920 4.9031 41 1 1.1012 -6.4744 3.5884 42 1 2.8505 -6.7534 4.0023 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000862298987.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:47:59 Heat of formation + Delta-G solvation = -119.340667 kcal Electronic energy + Delta-G solvation = -25548.177483 eV Core-core repulsion = 21723.508509 eV Total energy + Delta-G solvation = -3824.668974 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 300.156 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.85784 -40.18936 -37.41247 -36.36397 -34.96722 -34.05516 -32.65316 -31.93141 -29.21832 -27.57461 -27.52797 -26.17324 -25.92121 -24.99696 -22.07235 -21.10462 -20.04171 -18.48695 -18.29728 -17.22063 -16.70207 -16.28609 -15.79926 -15.45197 -15.36087 -14.88399 -14.70970 -14.51856 -14.24793 -13.74328 -13.60850 -13.40870 -13.03307 -12.90662 -12.66145 -12.31201 -12.24403 -12.04784 -12.03253 -11.58366 -11.52992 -11.44212 -11.15656 -11.03541 -10.71021 -10.50528 -10.45492 -10.25044 -10.13095 -9.92166 -9.13656 -8.88470 -8.87104 -7.66897 -7.41745 -6.18152 -4.66491 2.15930 2.85710 3.12485 3.19889 3.22663 4.01358 4.11160 4.34538 4.45683 4.55892 4.57755 4.60521 4.74369 4.84248 4.85452 5.28885 5.36289 5.42811 5.51145 5.52174 5.59648 5.69528 5.69574 5.71901 5.78487 5.81482 5.89719 6.09010 6.13255 6.27507 6.33442 6.35906 6.50527 6.65985 7.04891 7.40893 7.45565 7.75965 7.96321 8.25346 8.39716 9.00494 9.41801 10.58520 10.77861 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.016556 B = 0.003920 C = 0.003326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.805249 B = 7141.554184 C = 8415.665219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.136 3.864 3 C -0.141 4.141 4 C -0.184 4.184 5 O -0.364 6.364 6 C 0.650 3.350 7 O -0.574 6.574 8 N -0.704 5.704 9 C 0.140 3.860 10 C 0.112 3.888 11 N -0.745 5.745 12 C 0.542 3.458 13 O -0.531 6.531 14 C -0.546 4.546 15 H 0.065 0.935 16 C 0.089 3.911 17 N -0.764 5.764 18 Si 0.906 3.094 19 H -0.273 1.273 20 H -0.280 1.280 21 H -0.266 1.266 22 C 0.030 3.970 23 O -0.321 6.321 24 C 0.031 3.969 25 H 0.059 0.941 26 H 0.068 0.932 27 H 0.088 0.912 28 H 0.067 0.933 29 H 0.078 0.922 30 H 0.066 0.934 31 H 0.088 0.912 32 H 0.068 0.932 33 H 0.060 0.940 34 H 0.412 0.588 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.382 0.618 38 H 0.268 0.732 39 H 0.087 0.913 40 H 0.066 0.934 41 H 0.069 0.931 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.781 10.025 -14.103 18.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.099 3.901 3 C -0.198 4.198 4 C -0.241 4.241 5 O -0.279 6.279 6 C 0.403 3.597 7 O -0.464 6.464 8 N -0.364 5.364 9 C 0.017 3.983 10 C 0.022 3.978 11 N -0.402 5.402 12 C 0.345 3.655 13 O -0.409 6.409 14 C -0.583 4.583 15 H 0.083 0.917 16 C -0.131 4.131 17 N -0.393 5.393 18 Si 0.731 3.269 19 H -0.198 1.198 20 H -0.205 1.205 21 H -0.190 1.190 22 C -0.049 4.049 23 O -0.238 6.238 24 C -0.048 4.048 25 H 0.078 0.922 26 H 0.087 0.913 27 H 0.107 0.893 28 H 0.086 0.914 29 H 0.097 0.903 30 H 0.085 0.915 31 H 0.107 0.893 32 H 0.087 0.913 33 H 0.079 0.921 34 H 0.248 0.752 35 H 0.095 0.905 36 H 0.099 0.901 37 H 0.215 0.785 38 H 0.079 0.921 39 H 0.106 0.894 40 H 0.084 0.916 41 H 0.087 0.913 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -8.522 9.096 -13.443 18.332 hybrid contribution 1.374 0.801 -0.198 1.603 sum -7.148 9.898 -13.641 18.307 Atomic orbital electron populations 1.22518 0.94113 1.05072 1.02336 1.22039 0.94279 0.91527 0.82237 1.21862 1.02387 0.92596 1.02993 1.22518 1.01669 1.03523 0.96366 1.86328 1.71539 1.23730 1.46254 1.18084 0.78878 0.80457 0.82260 1.90876 1.41490 1.70531 1.43469 1.44760 1.55426 1.12606 1.23637 1.21711 1.00040 0.78853 0.97743 1.23269 0.86820 0.95293 0.92447 1.46247 1.07268 1.62352 1.24354 1.18383 0.87350 0.80097 0.79702 1.90800 1.67819 1.41142 1.41159 1.20834 0.94416 1.38095 1.04914 0.91679 1.25658 0.99153 0.93230 0.95082 1.70018 1.36296 1.27092 1.05845 0.86404 0.82928 0.78701 0.78894 1.19812 1.20507 1.19017 1.24264 0.96582 0.88428 0.95602 1.90025 1.88827 1.22768 1.22163 1.24225 0.99812 0.95865 0.84936 0.92190 0.91312 0.89334 0.91376 0.90281 0.91454 0.89327 0.91314 0.92098 0.75154 0.90487 0.90112 0.78547 0.92097 0.89447 0.91578 0.91303 0.89307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.84 8.37 37.16 0.31 -1.53 16 2 C 0.14 1.44 1.13 -90.61 -0.10 1.34 16 3 C -0.14 -1.13 8.85 37.16 0.33 -0.80 16 4 C -0.18 -1.88 8.37 37.16 0.31 -1.57 16 5 O -0.36 -4.76 9.94 -40.32 -0.40 -5.16 16 6 C 0.65 9.23 8.06 54.06 0.44 9.67 16 7 O -0.57 -8.93 11.88 -19.28 -0.23 -9.16 16 8 N -0.70 -9.55 5.17 -65.28 -0.34 -9.89 16 9 C 0.14 1.92 5.32 -4.05 -0.02 1.90 16 10 C 0.11 1.93 1.56 -130.73 -0.20 1.72 16 11 N -0.75 -15.04 4.97 -55.16 -0.27 -15.31 16 12 C 0.54 14.31 7.24 -12.99 -0.09 14.21 16 13 O -0.53 -15.93 11.05 -19.74 -0.22 -16.15 16 14 C -0.55 -14.73 9.54 -35.63 -0.34 -15.07 16 15 H 0.06 1.62 7.85 -52.49 -0.41 1.21 16 16 C 0.09 2.40 5.50 -17.36 -0.10 2.31 16 17 N -0.76 -22.35 11.83 55.55 0.66 -21.69 16 18 Si 0.91 19.77 29.56 -169.99 -5.02 14.74 16 19 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 20 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 21 H -0.27 -5.64 7.11 56.52 0.40 -5.23 16 22 C 0.03 0.56 7.79 37.61 0.29 0.86 16 23 O -0.32 -7.31 9.61 -60.17 -0.58 -7.89 16 24 C 0.03 0.58 7.90 37.61 0.30 0.88 16 25 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.09 1.09 5.88 -51.93 -0.31 0.78 16 28 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.09 1.11 5.88 -51.92 -0.31 0.80 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.41 5.58 7.74 -40.82 -0.32 5.26 16 35 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 36 H 0.08 1.03 7.88 -51.92 -0.41 0.62 16 37 H 0.38 6.88 7.83 -40.82 -0.32 6.56 16 38 H 0.27 7.19 8.29 -40.82 -0.34 6.85 16 39 H 0.09 1.81 7.90 -51.93 -0.41 1.40 16 40 H 0.07 1.00 7.92 -51.93 -0.41 0.58 16 41 H 0.07 1.00 8.10 -51.93 -0.42 0.57 16 42 H 0.09 1.81 8.12 -51.93 -0.42 1.38 16 LS Contribution 343.50 15.07 5.18 5.18 Total: -1.00 -33.84 343.50 -6.36 -40.20 By element: Atomic # 1 Polarization: 17.47 SS G_CDS: -6.25 Total: 11.23 kcal Atomic # 6 Polarization: 12.79 SS G_CDS: 1.12 Total: 13.91 kcal Atomic # 7 Polarization: -46.94 SS G_CDS: 0.05 Total: -46.89 kcal Atomic # 8 Polarization: -36.94 SS G_CDS: -1.43 Total: -38.37 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -5.02 Total: 14.74 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.84 -6.36 -40.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000862298987.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.141 kcal (2) G-P(sol) polarization free energy of solvation -33.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds