Wall clock time and date at job start Fri Apr 10 2020 17:47:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.53006 * 109.46772 * 2 1 4 4 C 1.52996 * 109.47118 * 240.00130 * 2 1 3 5 5 O 1.45202 * 109.46732 * 119.99826 * 2 1 3 6 6 C 1.34639 * 117.00005 * 60.00413 * 5 2 1 7 7 O 1.21504 * 119.99701 * 359.97438 * 6 5 2 8 8 N 1.34779 * 119.99768 * 179.97438 * 6 5 2 9 9 C 1.46494 * 119.99750 * 180.02562 * 8 6 5 10 10 C 1.53000 * 109.47188 * 180.02562 * 9 8 6 11 11 N 1.46507 * 112.99688 * 314.66718 * 10 9 8 12 12 C 1.34775 * 119.99876 * 177.84398 * 11 10 9 13 13 O 1.21683 * 120.00208 * 359.97438 * 12 11 10 14 14 C 1.46373 * 119.99634 * 179.97438 * 12 11 10 15 15 H 1.08002 * 120.00452 * 0.02562 * 14 12 11 16 16 C 1.40050 * 119.99716 * 179.71971 * 14 12 11 17 17 N 1.30674 * 120.00151 * 0.28083 * 16 14 12 18 18 Si 1.86803 * 119.99913 * 180.27503 * 16 14 12 19 19 H 1.48508 * 109.46742 * 90.00451 * 18 16 14 20 20 H 1.48501 * 109.47216 * 210.00308 * 18 16 14 21 21 H 1.48499 * 109.47135 * 330.00649 * 18 16 14 22 22 C 1.54038 * 113.92769 * 86.59598 * 10 9 8 23 23 O 1.44182 * 85.51469 * 136.81959 * 22 10 9 24 24 C 1.44171 * 93.34221 * 335.80829 * 23 22 10 25 25 H 1.09001 * 109.47094 * 300.00143 * 1 2 3 26 26 H 1.08998 * 109.46951 * 60.00086 * 1 2 3 27 27 H 1.09001 * 109.46874 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46387 * 179.97438 * 3 2 1 29 29 H 1.08998 * 109.47313 * 299.99693 * 3 2 1 30 30 H 1.08997 * 109.46736 * 60.00269 * 3 2 1 31 31 H 1.09007 * 109.46861 * 299.99705 * 4 2 1 32 32 H 1.08998 * 109.47386 * 60.00050 * 4 2 1 33 33 H 1.09000 * 109.46705 * 180.02562 * 4 2 1 34 34 H 0.97000 * 120.00167 * 0.02562 * 8 6 5 35 35 H 1.08992 * 109.47430 * 59.99906 * 9 8 6 36 36 H 1.09010 * 109.47131 * 299.99713 * 9 8 6 37 37 H 0.97000 * 119.99601 * 357.83737 * 11 10 9 38 38 H 0.97005 * 120.00029 * 179.97438 * 17 16 14 39 39 H 1.08997 * 113.86336 * 250.96159 * 22 10 9 40 40 H 1.08994 * 113.86326 * 22.67180 * 22 10 9 41 41 H 1.08997 * 113.86562 * 270.04669 * 24 23 22 42 42 H 1.09003 * 113.86758 * 138.34091 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6523 -1.9723 1.3384 7 8 0.9510 -2.5094 0.5040 8 7 2.0680 -2.6657 2.4168 9 6 1.6749 -4.0671 2.5827 10 6 2.2748 -4.6150 3.8791 11 7 3.6839 -4.2546 4.0549 12 6 4.3407 -4.6277 5.1711 13 8 3.7632 -5.2636 6.0330 14 6 5.7487 -4.2681 5.3464 15 1 6.2611 -3.7034 4.5816 16 6 6.4296 -4.6508 6.5089 17 7 5.8095 -5.3336 7.4345 18 14 8.2243 -4.1852 6.7361 19 1 8.3116 -2.8682 7.4168 20 1 8.9022 -5.2157 7.5631 21 1 8.8858 -4.1014 5.4092 22 6 1.4071 -4.3593 5.1260 23 8 1.7189 -5.7210 5.4829 24 6 1.9800 -6.1078 4.1188 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1301 1.4425 0.0005 29 1 1.6767 1.9564 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6768 -1.7489 -1.2492 32 1 1.6768 -0.2074 -2.1392 33 1 3.1301 -0.7216 -1.2489 34 1 2.6276 -2.2368 3.0830 35 1 2.0414 -4.6498 1.7376 36 1 0.5880 -4.1367 2.6279 37 1 4.1441 -3.7475 3.3679 38 1 6.2812 -5.5990 8.2395 39 1 1.8233 -3.6183 5.8084 40 1 0.3534 -4.1920 4.9031 41 1 1.1012 -6.4744 3.5884 42 1 2.8505 -6.7534 4.0023 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000862298987.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:47:58 Heat of formation + Delta-G solvation = -145.549898 kcal Electronic energy + Delta-G solvation = -25549.314001 eV Core-core repulsion = 21723.508509 eV Total energy + Delta-G solvation = -3825.805492 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 300.156 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.07799 -41.53688 -38.43799 -38.31607 -36.19821 -35.01103 -34.60041 -33.67202 -30.73962 -28.30806 -28.25572 -28.14545 -27.40549 -26.33025 -23.10017 -22.85363 -21.10408 -20.01827 -19.64136 -18.83227 -17.79885 -17.43881 -17.40599 -17.10258 -16.71311 -16.39188 -15.92608 -15.57265 -15.46005 -15.36188 -14.85589 -14.72117 -14.38514 -14.32938 -14.00418 -13.30620 -13.22090 -13.08762 -12.98124 -12.85377 -12.81955 -12.72845 -12.55068 -12.48668 -12.33196 -12.20181 -12.01583 -11.44354 -11.34250 -11.07554 -10.88850 -10.45394 -10.24274 -9.49808 -9.46751 -8.21210 -6.79064 1.15317 1.41182 1.41920 1.56265 1.77170 2.24661 2.52040 2.80961 2.90127 3.11533 3.39501 3.54434 3.79951 3.84900 3.86376 3.99679 4.24247 4.35479 4.48045 4.51359 4.62539 4.66616 4.75115 4.80746 4.81596 4.82593 4.89839 4.92346 5.05337 5.16619 5.24443 5.33457 5.36105 5.39706 5.57771 5.58461 5.90677 6.20972 6.27078 6.35512 6.93238 7.32177 7.54107 8.58256 8.77454 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.016556 B = 0.003920 C = 0.003326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1690.805249 B = 7141.554184 C = 8415.665219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.123 3.877 3 C -0.137 4.137 4 C -0.180 4.180 5 O -0.371 6.371 6 C 0.650 3.350 7 O -0.588 6.588 8 N -0.703 5.703 9 C 0.154 3.846 10 C 0.121 3.879 11 N -0.734 5.734 12 C 0.532 3.468 13 O -0.573 6.573 14 C -0.574 4.574 15 H 0.081 0.919 16 C 0.033 3.967 17 N -0.818 5.818 18 Si 0.990 3.010 19 H -0.264 1.264 20 H -0.277 1.277 21 H -0.252 1.252 22 C 0.032 3.968 23 O -0.373 6.373 24 C 0.032 3.968 25 H 0.060 0.940 26 H 0.092 0.908 27 H 0.064 0.936 28 H 0.066 0.934 29 H 0.104 0.896 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.092 0.908 33 H 0.059 0.941 34 H 0.412 0.588 35 H 0.086 0.914 36 H 0.102 0.898 37 H 0.394 0.606 38 H 0.271 0.729 39 H 0.055 0.945 40 H 0.110 0.890 41 H 0.117 0.883 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.703 11.745 -16.185 21.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.087 3.913 3 C -0.194 4.194 4 C -0.237 4.237 5 O -0.286 6.286 6 C 0.404 3.596 7 O -0.479 6.479 8 N -0.363 5.363 9 C 0.031 3.969 10 C 0.031 3.969 11 N -0.390 5.390 12 C 0.335 3.665 13 O -0.455 6.455 14 C -0.611 4.611 15 H 0.100 0.900 16 C -0.182 4.182 17 N -0.448 5.448 18 Si 0.810 3.190 19 H -0.188 1.188 20 H -0.202 1.202 21 H -0.175 1.175 22 C -0.046 4.046 23 O -0.291 6.291 24 C -0.047 4.047 25 H 0.079 0.921 26 H 0.110 0.890 27 H 0.083 0.917 28 H 0.085 0.915 29 H 0.123 0.877 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.111 0.889 33 H 0.078 0.922 34 H 0.248 0.752 35 H 0.104 0.896 36 H 0.120 0.880 37 H 0.229 0.771 38 H 0.081 0.919 39 H 0.074 0.926 40 H 0.127 0.873 41 H 0.135 0.865 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -8.459 10.851 -15.587 20.791 hybrid contribution 1.263 0.296 0.376 1.350 sum -7.196 11.147 -15.211 20.185 Atomic orbital electron populations 1.22473 0.93735 1.03827 1.03572 1.22445 0.94784 0.92630 0.81474 1.21896 1.02358 0.90863 1.04294 1.22477 1.01554 1.02335 0.97322 1.86342 1.71624 1.23089 1.47555 1.18117 0.78666 0.80836 0.81995 1.90880 1.42112 1.70960 1.43907 1.44702 1.55444 1.12521 1.23655 1.21567 1.00811 0.78930 0.95578 1.23170 0.84787 0.95007 0.93928 1.45751 1.08745 1.61513 1.22984 1.18576 0.87768 0.79644 0.80554 1.90777 1.68807 1.42798 1.43073 1.21388 0.95367 1.38553 1.05795 0.90039 1.26801 1.04510 0.92500 0.94358 1.70191 1.38859 1.29007 1.06776 0.85130 0.76034 0.78455 0.79348 1.18842 1.20218 1.17519 1.24387 0.98927 0.86184 0.95115 1.89974 1.89411 1.24775 1.24922 1.24387 1.00765 0.95896 0.83662 0.92104 0.88958 0.91702 0.91460 0.87746 0.91389 0.91749 0.88930 0.92206 0.75197 0.89585 0.88032 0.77117 0.91886 0.92623 0.87280 0.86506 0.92225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.24 8.37 71.99 0.60 -2.64 16 2 C 0.12 2.35 1.13 -10.79 -0.01 2.34 16 3 C -0.14 -1.83 8.85 71.98 0.64 -1.20 16 4 C -0.18 -3.34 8.37 71.98 0.60 -2.74 16 5 O -0.37 -9.19 9.94 -55.49 -0.55 -9.75 16 6 C 0.65 17.52 8.06 129.79 1.05 18.56 16 7 O -0.59 -17.45 11.88 19.83 0.24 -17.21 16 8 N -0.70 -17.95 5.17 -590.86 -3.06 -21.00 16 9 C 0.15 3.88 5.32 86.38 0.46 4.34 16 10 C 0.12 4.06 1.56 4.30 0.01 4.07 16 11 N -0.73 -29.75 4.97 -457.70 -2.28 -32.02 16 12 C 0.53 28.88 7.24 86.36 0.63 29.51 16 13 O -0.57 -35.84 11.05 19.56 0.22 -35.62 16 14 C -0.57 -31.40 9.54 24.83 0.24 -31.16 16 15 H 0.08 4.02 7.85 -2.91 -0.02 4.00 16 16 C 0.03 1.83 5.50 85.30 0.47 2.30 16 17 N -0.82 -49.49 11.83 21.84 0.26 -49.23 16 18 Si 0.99 40.71 29.56 68.60 2.03 42.74 16 19 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 20 H -0.28 -11.16 7.11 99.48 0.71 -10.45 16 21 H -0.25 -9.67 7.11 99.48 0.71 -8.96 16 22 C 0.03 1.19 7.79 72.28 0.56 1.75 16 23 O -0.37 -17.32 9.61 -125.13 -1.20 -18.52 16 24 C 0.03 1.16 7.90 72.27 0.57 1.73 16 25 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 26 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.06 1.51 5.88 -2.39 -0.01 1.50 16 28 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.06 1.54 5.88 -2.38 -0.01 1.52 16 32 H 0.09 1.23 8.14 -2.39 -0.02 1.22 16 33 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.41 10.68 7.74 -92.71 -0.72 9.96 16 35 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 36 H 0.10 2.23 7.88 -2.38 -0.02 2.22 16 37 H 0.39 14.00 7.83 -92.71 -0.73 13.27 16 38 H 0.27 15.05 8.29 -92.70 -0.77 14.28 16 39 H 0.06 2.38 7.90 -2.39 -0.02 2.36 16 40 H 0.11 3.04 7.92 -2.39 -0.02 3.02 16 41 H 0.12 3.08 8.10 -2.39 -0.02 3.06 16 42 H 0.06 2.49 8.12 -2.39 -0.02 2.47 16 Total: -1.00 -77.00 343.50 1.07 -75.93 By element: Atomic # 1 Polarization: 38.21 SS G_CDS: -0.39 Total: 37.81 kcal Atomic # 6 Polarization: 21.06 SS G_CDS: 5.81 Total: 26.87 kcal Atomic # 7 Polarization: -97.18 SS G_CDS: -5.07 Total: -102.25 kcal Atomic # 8 Polarization: -79.79 SS G_CDS: -1.30 Total: -81.10 kcal Atomic # 14 Polarization: 40.71 SS G_CDS: 2.03 Total: 42.74 kcal Total: -77.00 1.07 -75.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000862298987.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.617 kcal (2) G-P(sol) polarization free energy of solvation -76.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds