Wall clock time and date at job start Fri Apr 10 2020 17:48:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46494 * 109.47047 * 71.24889 * 3 2 1 5 5 C 1.37093 * 120.00262 * 264.93588 * 4 3 2 6 6 H 1.07999 * 120.00716 * 189.77271 * 5 4 3 7 7 C 1.38951 * 119.99773 * 9.77588 * 5 4 3 8 8 N 1.31414 * 120.00046 * 16.83976 * 7 5 4 9 9 Si 1.86804 * 120.00234 * 196.84185 * 7 5 4 10 10 H 1.48500 * 109.46892 * 59.99654 * 9 7 5 11 11 H 1.48495 * 109.47416 * 179.97438 * 9 7 5 12 12 H 1.48496 * 109.46895 * 300.00044 * 9 7 5 13 13 C 1.34783 * 119.99878 * 84.94350 * 4 3 2 14 14 O 1.21285 * 120.00297 * 354.12251 * 13 4 3 15 15 C 1.50705 * 119.99729 * 174.12643 * 13 4 3 16 16 H 1.09001 * 109.53083 * 306.36552 * 15 13 4 17 17 C 1.53117 * 109.50480 * 66.46347 * 15 13 4 18 18 C 1.53120 * 109.16103 * 177.59312 * 17 15 13 19 19 C 1.53037 * 109.27633 * 302.34819 * 18 17 15 20 20 N 1.46825 * 109.51775 * 59.18242 * 19 18 17 21 21 C 1.46902 * 110.98611 * 174.15417 * 20 19 18 22 22 C 1.52999 * 109.47034 * 201.72042 * 21 20 19 23 23 F 1.39903 * 109.46960 * 293.20567 * 22 21 20 24 24 F 1.39898 * 109.47253 * 53.20860 * 22 21 20 25 25 C 1.46849 * 111.20968 * 298.24343 * 20 19 18 26 26 H 4.40635 * 5.51381 * 180.02562 * 4 1 2 27 27 H 1.09000 * 109.46993 * 311.24356 * 3 2 1 28 28 H 1.09005 * 109.46463 * 191.25028 * 3 2 1 29 29 H 0.97005 * 120.00066 * 179.97438 * 8 7 5 30 30 H 1.09001 * 109.52244 * 297.50104 * 17 15 13 31 31 H 1.09002 * 109.51858 * 57.69243 * 17 15 13 32 32 H 1.08999 * 109.49848 * 62.28764 * 18 17 15 33 33 H 1.08997 * 109.50312 * 182.40521 * 18 17 15 34 34 H 1.09008 * 109.46053 * 179.19363 * 19 18 17 35 35 H 1.08997 * 109.46593 * 299.17007 * 19 18 17 36 36 H 1.09004 * 109.46896 * 321.72006 * 21 20 19 37 37 H 1.09005 * 109.46956 * 81.71592 * 21 20 19 38 38 H 1.09000 * 109.47198 * 173.20974 * 22 21 20 39 39 H 1.08998 * 109.46460 * 301.74610 * 25 20 19 40 40 H 1.08998 * 109.46619 * 181.76049 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1344 -0.4431 -1.3079 5 6 3.4623 -1.7593 -1.5066 6 1 3.9682 -2.0591 -2.4125 7 6 3.1438 -2.7079 -0.5425 8 7 2.2568 -2.4287 0.3861 9 14 3.9762 -4.3800 -0.5664 10 1 5.4440 -4.2042 -0.4255 11 1 3.4664 -5.2029 0.5597 12 1 3.6805 -5.0618 -1.8520 13 6 3.2617 0.4427 -2.3157 14 8 2.8726 1.5827 -2.1740 15 6 3.8874 0.0166 -3.6189 16 1 4.8630 -0.4295 -3.4260 17 6 2.9836 -1.0090 -4.3087 18 6 3.5965 -1.3913 -5.6588 19 6 3.7714 -0.1311 -6.5092 20 7 4.6441 0.8177 -5.8064 21 6 4.9465 1.9802 -6.6521 22 6 6.2280 2.6525 -6.1556 23 9 6.0036 3.2079 -4.8913 24 9 7.2512 1.7021 -6.0726 25 6 4.0540 1.2360 -4.5284 26 1 -1.0500 0.0002 -0.0001 27 1 3.0096 -0.6767 0.7727 28 1 3.0087 1.0088 0.2005 29 1 2.0341 -3.0910 1.0589 30 1 2.8973 -1.8975 -3.6831 31 1 1.9958 -0.5761 -4.4666 32 1 4.5676 -1.8596 -5.4980 33 1 2.9362 -2.0891 -6.1737 34 1 4.2209 -0.3980 -7.4658 35 1 2.7984 0.3291 -6.6810 36 1 5.0834 1.6537 -7.6830 37 1 4.1209 2.6902 -6.6024 38 1 6.5187 3.4394 -6.8516 39 1 3.0796 1.6897 -4.7095 40 1 4.7087 1.9620 -4.0463 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000868040737.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:48:05 Heat of formation + Delta-G solvation = -81.931197 kcal Electronic energy + Delta-G solvation = -25636.164799 eV Core-core repulsion = 21702.030505 eV Total energy + Delta-G solvation = -3934.134294 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 300.139 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.73326 -47.75877 -41.15048 -39.24775 -37.04729 -35.00684 -33.78816 -33.17703 -31.87252 -30.06816 -28.39658 -26.73579 -25.09370 -24.36997 -22.87152 -21.32188 -20.61474 -19.63089 -18.62326 -18.26265 -18.12435 -18.00323 -17.11961 -16.41933 -16.26212 -16.06649 -15.93464 -15.62531 -15.12229 -14.87490 -14.67691 -14.56030 -14.21286 -14.12778 -13.89629 -13.69762 -13.44541 -13.31797 -13.11122 -12.86731 -12.68700 -12.55105 -12.25639 -12.11506 -11.94987 -11.73712 -11.52938 -11.27379 -11.24211 -10.96963 -10.61396 -10.21163 -9.85771 -9.37758 -8.23649 -5.85985 1.43528 1.50858 1.59137 1.87528 2.06819 2.32635 2.37320 2.67385 3.08832 3.12880 3.28884 3.52466 3.69128 3.83962 3.90908 3.98409 4.04092 4.17007 4.29711 4.40121 4.45127 4.56292 4.60223 4.69046 4.74050 4.75849 4.95281 5.02400 5.03253 5.12535 5.15243 5.33818 5.38596 5.43512 5.55838 5.76740 5.96678 6.06729 6.41722 7.06248 7.11564 7.54371 7.94737 8.73532 Molecular weight = 300.14amu Principal moments of inertia in cm(-1) A = 0.016581 B = 0.005013 C = 0.004489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.244244 B = 5584.313912 C = 6236.636138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.265 4.265 2 C -0.144 4.144 3 C 0.230 3.770 4 N -0.446 5.446 5 C -0.351 4.351 6 H 0.122 0.878 7 C -0.007 4.007 8 N -0.886 5.886 9 Si 0.987 3.013 10 H -0.268 1.268 11 H -0.286 1.286 12 H -0.263 1.263 13 C 0.448 3.552 14 O -0.638 6.638 15 C -0.072 4.072 16 H 0.087 0.913 17 C -0.113 4.113 18 C -0.108 4.108 19 C 0.058 3.942 20 N -0.543 5.543 21 C -0.001 4.001 22 C 0.257 3.743 23 F -0.228 7.228 24 F -0.214 7.214 25 C 0.082 3.918 26 H 0.237 0.763 27 H 0.121 0.879 28 H 0.052 0.948 29 H 0.269 0.731 30 H 0.079 0.921 31 H 0.037 0.963 32 H 0.073 0.927 33 H 0.089 0.911 34 H 0.107 0.893 35 H 0.033 0.967 36 H 0.138 0.862 37 H 0.071 0.929 38 H 0.160 0.840 39 H 0.020 0.980 40 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.078 2.780 -15.025 16.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.283 4.283 2 C -0.145 4.145 3 C 0.108 3.892 4 N -0.163 5.163 5 C -0.477 4.477 6 H 0.139 0.861 7 C -0.209 4.209 8 N -0.525 5.525 9 Si 0.811 3.189 10 H -0.193 1.193 11 H -0.212 1.212 12 H -0.187 1.187 13 C 0.238 3.762 14 O -0.527 6.527 15 C -0.094 4.094 16 H 0.106 0.894 17 C -0.151 4.151 18 C -0.145 4.145 19 C -0.069 4.069 20 N -0.268 5.268 21 C -0.130 4.130 22 C 0.203 3.797 23 F -0.209 7.209 24 F -0.195 7.195 25 C -0.046 4.046 26 H 0.254 0.746 27 H 0.139 0.861 28 H 0.070 0.930 29 H 0.079 0.921 30 H 0.097 0.903 31 H 0.056 0.944 32 H 0.092 0.908 33 H 0.108 0.892 34 H 0.125 0.875 35 H 0.051 0.949 36 H 0.156 0.844 37 H 0.090 0.910 38 H 0.177 0.823 39 H 0.039 0.961 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 5.284 2.953 -14.638 15.841 hybrid contribution -0.910 -0.295 0.808 1.252 sum 4.374 2.659 -13.830 14.747 Atomic orbital electron populations 1.25186 0.96427 1.05338 1.01396 1.23714 0.95310 0.96303 0.99223 1.18420 0.84561 0.97906 0.88323 1.43963 1.55212 1.08651 1.08470 1.20179 1.37849 0.82113 1.07563 0.86059 1.26096 0.95758 1.03227 0.95800 1.70207 1.28844 1.36515 1.16884 0.85065 0.78615 0.77022 0.78196 1.19299 1.21172 1.18733 1.20856 0.83680 0.85295 0.86380 1.90490 1.56719 1.22126 1.83381 1.20861 0.99928 0.97253 0.91316 0.89443 1.21657 0.96777 0.98880 0.97768 1.21581 1.01726 0.97350 0.93877 1.22232 0.94721 0.92369 0.97616 1.61856 1.46478 1.14661 1.03769 1.23403 0.96197 0.93584 0.99771 1.22644 0.86591 0.88397 0.82061 1.92911 1.95045 1.86224 1.46738 1.92950 1.61919 1.67984 1.96652 1.21859 0.97277 0.95622 0.89881 0.74636 0.86133 0.93024 0.92050 0.90258 0.94385 0.90817 0.89220 0.87502 0.94854 0.84429 0.91050 0.82296 0.96140 0.90848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -12.29 19.25 74.32 1.43 -10.86 16 2 C -0.14 -7.50 12.01 31.12 0.37 -7.13 16 3 C 0.23 12.07 5.04 84.57 0.43 12.50 16 4 N -0.45 -23.29 2.60 -645.43 -1.68 -24.97 16 5 C -0.35 -17.43 8.04 84.04 0.68 -16.76 16 6 H 0.12 5.60 4.94 -2.91 -0.01 5.58 16 7 C -0.01 -0.35 5.10 84.93 0.43 0.08 16 8 N -0.89 -45.85 9.02 21.66 0.20 -45.65 16 9 Si 0.99 38.71 29.59 68.60 2.03 40.74 16 10 H -0.27 -10.28 7.11 99.48 0.71 -9.58 16 11 H -0.29 -11.27 7.11 99.48 0.71 -10.56 16 12 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 13 C 0.45 22.79 6.94 87.66 0.61 23.40 16 14 O -0.64 -35.98 15.69 -3.05 -0.05 -36.03 16 15 C -0.07 -2.97 1.86 -11.49 -0.02 -2.99 16 16 H 0.09 3.65 7.69 -2.39 -0.02 3.63 16 17 C -0.11 -4.11 4.86 30.67 0.15 -3.96 16 18 C -0.11 -2.84 6.09 30.65 0.19 -2.65 16 19 C 0.06 1.32 5.42 86.33 0.47 1.79 16 20 N -0.54 -14.88 4.38 -896.39 -3.93 -18.81 16 21 C 0.00 -0.02 5.39 86.30 0.47 0.45 16 22 C 0.26 5.20 5.59 71.98 0.40 5.60 16 23 F -0.23 -6.71 14.77 44.97 0.66 -6.05 16 24 F -0.21 -5.53 17.13 44.97 0.77 -4.76 16 25 C 0.08 3.01 3.85 86.33 0.33 3.34 16 26 H 0.24 8.48 7.80 -4.42 -0.03 8.44 16 27 H 0.12 6.41 5.73 -2.39 -0.01 6.40 16 28 H 0.05 2.69 7.67 -2.38 -0.02 2.67 16 29 H 0.27 13.34 8.31 -92.70 -0.77 12.57 16 30 H 0.08 3.18 5.24 -2.39 -0.01 3.17 16 31 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.11 1.76 7.92 -2.38 -0.02 1.74 16 35 H 0.03 0.77 8.14 -2.39 -0.02 0.76 16 36 H 0.14 1.58 7.76 -2.38 -0.02 1.56 16 37 H 0.07 1.33 7.97 -2.38 -0.02 1.31 16 38 H 0.16 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.02 0.81 8.01 -2.39 -0.02 0.79 16 40 H 0.07 2.98 5.55 -2.39 -0.01 2.97 16 Total: -1.00 -68.54 329.22 4.99 -63.55 By element: Atomic # 1 Polarization: 28.12 SS G_CDS: 1.05 Total: 29.17 kcal Atomic # 6 Polarization: -3.13 SS G_CDS: 5.93 Total: 2.80 kcal Atomic # 7 Polarization: -84.02 SS G_CDS: -5.41 Total: -89.43 kcal Atomic # 8 Polarization: -35.98 SS G_CDS: -0.05 Total: -36.03 kcal Atomic # 9 Polarization: -12.24 SS G_CDS: 1.43 Total: -10.80 kcal Atomic # 14 Polarization: 38.71 SS G_CDS: 2.03 Total: 40.74 kcal Total: -68.54 4.99 -63.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868040737.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.380 kcal (2) G-P(sol) polarization free energy of solvation -68.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds