Wall clock time and date at job start Fri Apr 10 2020 17:48:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86810 * 119.99659 * 2 1 4 4 H 1.48496 * 109.47289 * 270.00260 * 3 2 1 5 5 H 1.48499 * 109.47156 * 30.00406 * 3 2 1 6 6 H 1.48505 * 109.46760 * 149.99913 * 3 2 1 7 7 C 1.37872 * 120.00233 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00113 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00031 * 180.02562 * 7 2 1 10 10 C 1.52999 * 109.47390 * 180.02562 * 9 7 2 11 11 C 1.52992 * 109.47464 * 179.97438 * 10 9 7 12 12 N 1.46500 * 109.47517 * 179.97438 * 11 10 9 13 13 C 1.34776 * 120.00508 * 180.02562 * 12 11 10 14 14 O 1.21590 * 119.99488 * 359.97438 * 13 12 11 15 15 N 1.34774 * 120.00371 * 180.02562 * 13 12 11 16 16 C 1.46497 * 120.00444 * 180.02562 * 15 13 12 17 17 H 1.09004 * 109.46581 * 324.99878 * 16 15 13 18 18 C 1.52997 * 109.47224 * 84.99314 * 16 15 13 19 19 O 1.42901 * 109.46779 * 65.00592 * 18 16 15 20 20 C 1.52997 * 109.47195 * 204.99889 * 16 15 13 21 21 C 1.53000 * 109.47060 * 64.99866 * 20 16 15 22 22 H 1.08998 * 109.82020 * 305.56035 * 21 20 16 23 23 C 1.54384 * 109.82653 * 184.58709 * 21 20 16 24 24 C 1.55305 * 102.25213 * 219.12403 * 23 21 20 25 25 C 1.54952 * 100.93989 * 34.13574 * 24 23 21 26 26 O 1.43236 * 109.83220 * 66.45297 * 21 20 16 27 27 H 0.97003 * 120.00352 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.47142 * 59.99741 * 9 7 2 29 29 H 1.09007 * 109.47342 * 300.00073 * 9 7 2 30 30 H 1.08999 * 109.46839 * 59.99475 * 10 9 7 31 31 H 1.08998 * 109.46743 * 300.00036 * 10 9 7 32 32 H 1.09009 * 109.47257 * 59.99927 * 11 10 9 33 33 H 1.08998 * 109.47286 * 299.99846 * 11 10 9 34 34 H 0.97001 * 119.99656 * 0.02562 * 12 11 10 35 35 H 0.97001 * 119.99794 * 359.97438 * 15 13 12 36 36 H 1.09001 * 109.47207 * 184.99974 * 18 16 15 37 37 H 1.08995 * 109.47546 * 305.00513 * 18 16 15 38 38 H 0.96705 * 114.00007 * 179.97438 * 19 18 16 39 39 H 1.09002 * 109.47153 * 304.99547 * 20 16 15 40 40 H 1.09001 * 109.46832 * 184.99738 * 20 16 15 41 41 H 1.08995 * 110.85400 * 337.32105 * 23 21 20 42 42 H 1.09004 * 110.84714 * 100.94180 * 23 21 20 43 43 H 1.09000 * 111.13164 * 276.21751 * 24 23 21 44 44 H 1.08997 * 111.16322 * 152.06609 * 24 23 21 45 45 H 1.08995 * 110.31123 * 204.63650 * 25 24 23 46 46 H 1.09002 * 110.39100 * 82.50938 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1939 0.0000 10 6 4.0217 -2.6364 -0.0014 11 6 5.5516 -2.6363 -0.0014 12 7 6.0401 -4.0175 -0.0022 13 6 7.3651 -4.2638 -0.0018 14 8 8.1552 -3.3395 -0.0014 15 7 7.8145 -5.5344 -0.0030 16 6 9.2548 -5.8021 -0.0021 17 1 9.7663 -5.0401 -0.5901 18 6 9.7779 -5.7734 1.4354 19 8 9.1936 -6.8464 2.1764 20 6 9.5178 -7.1799 -0.6132 21 6 9.1088 -7.1704 -2.0874 22 1 8.0750 -6.8383 -2.1821 23 6 9.2625 -8.5866 -2.6826 24 6 9.8207 -8.2892 -4.1010 25 6 10.6929 -7.0401 -3.8179 26 8 9.9700 -6.2951 -2.8250 27 1 -0.4851 0.8400 0.0004 28 1 3.8745 -0.6807 0.8905 29 1 3.8753 -0.6795 -0.8895 30 1 3.6586 -3.1492 -0.8920 31 1 3.6580 -3.1512 0.8879 32 1 5.9150 -2.1233 0.8891 33 1 5.9149 -2.1217 -0.8909 34 1 5.4097 -4.7548 -0.0029 35 1 7.1841 -6.2717 -0.0037 36 1 10.8623 -5.8840 1.4297 37 1 9.5120 -4.8239 1.9000 38 1 9.4811 -6.8899 3.0987 39 1 8.9358 -7.9312 -0.0794 40 1 10.5787 -7.4168 -0.5319 41 1 9.9719 -9.1765 -2.1023 42 1 8.2969 -9.0887 -2.7433 43 1 9.0165 -8.0567 -4.7991 44 1 10.4277 -9.1174 -4.4666 45 1 10.8102 -6.4471 -4.7248 46 1 11.6681 -7.3374 -3.4321 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000884124338.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:48:07 Heat of formation + Delta-G solvation = -147.368115 kcal Electronic energy + Delta-G solvation = -24600.949808 eV Core-core repulsion = 20910.898566 eV Total energy + Delta-G solvation = -3690.051241 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 300.188 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.28960 -39.50640 -37.49335 -35.57138 -34.80176 -33.27744 -32.53865 -31.96919 -31.06002 -29.10301 -26.87863 -25.91619 -23.13144 -22.37691 -21.61229 -21.01879 -20.58340 -20.20605 -18.27587 -17.52152 -17.11481 -16.80096 -16.41046 -16.19880 -15.52479 -15.04619 -14.66002 -14.40524 -14.29858 -13.99707 -13.88090 -13.82577 -13.58332 -13.46379 -12.66651 -12.38829 -12.25068 -12.10247 -11.95557 -11.86407 -11.78833 -11.37684 -11.21985 -11.01395 -10.95413 -10.84791 -10.27135 -10.15791 -9.94351 -9.81400 -9.77000 -9.62713 -9.19273 -9.11350 -8.58337 -8.52457 -6.03580 -4.02021 2.85586 3.34160 3.40961 3.41407 3.46491 3.51562 4.09274 4.11788 4.20976 4.42717 4.47390 4.50456 4.71329 4.77045 4.87929 4.99614 5.10849 5.18468 5.28325 5.30742 5.32638 5.38867 5.40693 5.48100 5.60455 5.63614 5.66254 5.75887 5.85543 5.92547 6.10271 6.45910 6.52873 6.54166 6.76755 6.76901 6.89408 7.11405 7.28078 7.36651 7.41218 7.79096 8.20921 8.53356 8.80976 9.00423 9.58920 11.09681 Molecular weight = 300.19amu Principal moments of inertia in cm(-1) A = 0.019108 B = 0.002571 C = 0.002424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.003908 B =10890.195673 C =11546.368165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.066 3.934 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.264 1.264 7 C -0.521 4.521 8 H 0.072 0.928 9 C -0.011 4.011 10 C -0.113 4.113 11 C 0.134 3.866 12 N -0.742 5.742 13 C 0.702 3.298 14 O -0.596 6.596 15 N -0.738 5.738 16 C 0.172 3.828 17 H 0.107 0.893 18 C 0.061 3.939 19 O -0.570 6.570 20 C -0.130 4.130 21 C 0.078 3.922 22 H 0.082 0.918 23 C -0.151 4.151 24 C -0.158 4.158 25 C 0.049 3.951 26 O -0.373 6.373 27 H 0.263 0.737 28 H 0.019 0.981 29 H 0.015 0.985 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.394 0.606 35 H 0.394 0.606 36 H 0.051 0.949 37 H 0.054 0.946 38 H 0.376 0.624 39 H 0.086 0.914 40 H 0.079 0.921 41 H 0.078 0.922 42 H 0.082 0.918 43 H 0.078 0.922 44 H 0.081 0.919 45 H 0.084 0.916 46 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.441 -21.060 -2.683 31.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.135 4.135 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.188 1.188 7 C -0.559 4.559 8 H 0.090 0.910 9 C -0.049 4.049 10 C -0.151 4.151 11 C 0.010 3.990 12 N -0.397 5.397 13 C 0.402 3.598 14 O -0.474 6.474 15 N -0.393 5.393 16 C 0.067 3.933 17 H 0.125 0.875 18 C -0.018 4.018 19 O -0.376 6.376 20 C -0.168 4.168 21 C 0.021 3.979 22 H 0.100 0.900 23 C -0.189 4.189 24 C -0.195 4.195 25 C -0.028 4.028 26 O -0.293 6.293 27 H 0.073 0.927 28 H 0.037 0.963 29 H 0.033 0.967 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.228 0.772 35 H 0.228 0.772 36 H 0.069 0.931 37 H 0.072 0.928 38 H 0.223 0.777 39 H 0.105 0.895 40 H 0.098 0.902 41 H 0.096 0.904 42 H 0.101 0.899 43 H 0.097 0.903 44 H 0.100 0.900 45 H 0.102 0.898 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 23.743 -19.939 -3.227 31.172 hybrid contribution -0.001 0.103 0.520 0.530 sum 23.742 -19.836 -2.708 31.056 Atomic orbital electron populations 1.69916 1.06317 1.26923 1.51161 1.25030 0.94747 0.99242 0.94495 0.86774 0.80426 0.83499 0.78601 1.20240 1.21414 1.18847 1.21105 0.89353 0.94486 1.50931 0.91030 1.19502 0.97192 0.91540 0.96675 1.21697 0.90800 1.00917 1.01642 1.21484 0.95575 0.80196 1.01717 1.45315 1.04856 1.09960 1.79519 1.16010 0.82952 0.83150 0.77711 1.90903 1.55076 1.43257 1.58206 1.45071 1.07406 1.06198 1.80669 1.20810 0.80961 0.97862 0.93706 0.87542 1.22730 0.96066 0.90003 0.93043 1.86435 1.72144 1.52080 1.26895 1.22163 1.02969 0.97100 0.94550 1.22806 0.94894 0.89074 0.91152 0.89986 1.23187 1.02544 0.97173 0.96001 1.23270 1.00220 0.98593 0.97451 1.23371 0.94896 0.92425 0.92074 1.88506 1.57880 1.33361 1.49526 0.92732 0.96301 0.96717 0.92197 0.92178 0.92112 0.92033 0.77246 0.77194 0.93117 0.92784 0.77707 0.89516 0.90193 0.90350 0.89933 0.90300 0.90018 0.89826 0.92365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.05 13.96 55.43 0.77 -27.28 16 2 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 3 Si 0.88 22.04 27.47 -169.99 -4.67 17.37 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.26 -6.39 6.54 56.52 0.37 -6.02 16 7 C -0.52 -14.87 9.66 -34.44 -0.33 -15.20 16 8 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 9 C -0.01 -0.27 4.04 -27.88 -0.11 -0.38 16 10 C -0.11 -2.16 5.27 -26.74 -0.14 -2.30 16 11 C 0.13 2.34 5.67 -4.05 -0.02 2.32 16 12 N -0.74 -10.91 5.56 -65.23 -0.36 -11.27 16 13 C 0.70 10.93 8.53 -86.92 -0.74 10.19 16 14 O -0.60 -11.71 16.01 5.29 0.08 -11.62 16 15 N -0.74 -8.49 4.40 -58.68 -0.26 -8.74 16 16 C 0.17 1.83 2.33 -67.93 -0.16 1.68 16 17 H 0.11 1.41 7.19 -51.93 -0.37 1.04 16 18 C 0.06 0.59 6.85 37.16 0.25 0.84 16 19 O -0.57 -4.92 12.83 -35.23 -0.45 -5.37 16 20 C -0.13 -1.04 4.04 -26.73 -0.11 -1.14 16 21 C 0.08 0.67 3.46 -26.01 -0.09 0.58 16 22 H 0.08 0.77 7.63 -51.93 -0.40 0.37 16 23 C -0.15 -0.92 6.54 -24.78 -0.16 -1.08 16 24 C -0.16 -0.93 7.16 -24.48 -0.18 -1.11 16 25 C 0.05 0.37 7.78 38.19 0.30 0.67 16 26 O -0.37 -4.03 10.55 -35.23 -0.37 -4.40 16 27 H 0.26 7.63 8.31 -40.82 -0.34 7.30 16 28 H 0.02 0.45 7.20 -51.93 -0.37 0.08 16 29 H 0.01 0.35 7.57 -51.93 -0.39 -0.05 16 30 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 32 H 0.06 1.12 8.14 -51.92 -0.42 0.69 16 33 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.39 4.70 8.49 -40.82 -0.35 4.35 16 35 H 0.39 3.63 8.62 -40.82 -0.35 3.28 16 36 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.38 1.83 9.12 45.56 0.42 2.25 16 39 H 0.09 0.64 7.73 -51.93 -0.40 0.24 16 40 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.08 0.41 7.85 -51.93 -0.41 0.00 16 42 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 LS Contribution 373.72 15.07 5.63 5.63 Total: -1.00 -35.56 373.72 -8.50 -44.06 By element: Atomic # 1 Polarization: 12.02 SS G_CDS: -7.29 Total: 4.74 kcal Atomic # 6 Polarization: -1.52 SS G_CDS: -1.59 Total: -3.11 kcal Atomic # 7 Polarization: -47.45 SS G_CDS: 0.15 Total: -47.29 kcal Atomic # 8 Polarization: -20.66 SS G_CDS: -0.74 Total: -21.40 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -4.67 Total: 17.37 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -35.56 -8.50 -44.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884124338.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.311 kcal (2) G-P(sol) polarization free energy of solvation -35.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds