Wall clock time and date at job start Fri Apr 10 2020 17:48:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86810 * 119.99659 * 2 1 4 4 H 1.48496 * 109.47289 * 270.00260 * 3 2 1 5 5 H 1.48499 * 109.47156 * 30.00406 * 3 2 1 6 6 H 1.48505 * 109.46760 * 149.99913 * 3 2 1 7 7 C 1.37872 * 120.00233 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00113 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00031 * 180.02562 * 7 2 1 10 10 C 1.52999 * 109.47390 * 180.02562 * 9 7 2 11 11 C 1.52992 * 109.47464 * 179.97438 * 10 9 7 12 12 N 1.46500 * 109.47517 * 179.97438 * 11 10 9 13 13 C 1.34776 * 120.00508 * 180.02562 * 12 11 10 14 14 O 1.21590 * 119.99488 * 359.97438 * 13 12 11 15 15 N 1.34774 * 120.00371 * 180.02562 * 13 12 11 16 16 C 1.46497 * 120.00444 * 180.02562 * 15 13 12 17 17 H 1.09004 * 109.46581 * 324.99878 * 16 15 13 18 18 C 1.52997 * 109.47224 * 84.99314 * 16 15 13 19 19 O 1.42901 * 109.46779 * 65.00592 * 18 16 15 20 20 C 1.52997 * 109.47195 * 204.99889 * 16 15 13 21 21 C 1.53000 * 109.47060 * 64.99866 * 20 16 15 22 22 H 1.08998 * 109.82020 * 305.56035 * 21 20 16 23 23 C 1.54384 * 109.82653 * 184.58709 * 21 20 16 24 24 C 1.55305 * 102.25213 * 219.12403 * 23 21 20 25 25 C 1.54952 * 100.93989 * 34.13574 * 24 23 21 26 26 O 1.43236 * 109.83220 * 66.45297 * 21 20 16 27 27 H 0.97003 * 120.00352 * 359.97438 * 1 2 3 28 28 H 1.08997 * 109.47142 * 59.99741 * 9 7 2 29 29 H 1.09007 * 109.47342 * 300.00073 * 9 7 2 30 30 H 1.08999 * 109.46839 * 59.99475 * 10 9 7 31 31 H 1.08998 * 109.46743 * 300.00036 * 10 9 7 32 32 H 1.09009 * 109.47257 * 59.99927 * 11 10 9 33 33 H 1.08998 * 109.47286 * 299.99846 * 11 10 9 34 34 H 0.97001 * 119.99656 * 0.02562 * 12 11 10 35 35 H 0.97001 * 119.99794 * 359.97438 * 15 13 12 36 36 H 1.09001 * 109.47207 * 184.99974 * 18 16 15 37 37 H 1.08995 * 109.47546 * 305.00513 * 18 16 15 38 38 H 0.96705 * 114.00007 * 179.97438 * 19 18 16 39 39 H 1.09002 * 109.47153 * 304.99547 * 20 16 15 40 40 H 1.09001 * 109.46832 * 184.99738 * 20 16 15 41 41 H 1.08995 * 110.85400 * 337.32105 * 23 21 20 42 42 H 1.09004 * 110.84714 * 100.94180 * 23 21 20 43 43 H 1.09000 * 111.13164 * 276.21751 * 24 23 21 44 44 H 1.08997 * 111.16322 * 152.06609 * 24 23 21 45 45 H 1.08995 * 110.31123 * 204.63650 * 25 24 23 46 46 H 1.09002 * 110.39100 * 82.50938 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1939 0.0000 10 6 4.0217 -2.6364 -0.0014 11 6 5.5516 -2.6363 -0.0014 12 7 6.0401 -4.0175 -0.0022 13 6 7.3651 -4.2638 -0.0018 14 8 8.1552 -3.3395 -0.0014 15 7 7.8145 -5.5344 -0.0030 16 6 9.2548 -5.8021 -0.0021 17 1 9.7663 -5.0401 -0.5901 18 6 9.7779 -5.7734 1.4354 19 8 9.1936 -6.8464 2.1764 20 6 9.5178 -7.1799 -0.6132 21 6 9.1088 -7.1704 -2.0874 22 1 8.0750 -6.8383 -2.1821 23 6 9.2625 -8.5866 -2.6826 24 6 9.8207 -8.2892 -4.1010 25 6 10.6929 -7.0401 -3.8179 26 8 9.9700 -6.2951 -2.8250 27 1 -0.4851 0.8400 0.0004 28 1 3.8745 -0.6807 0.8905 29 1 3.8753 -0.6795 -0.8895 30 1 3.6586 -3.1492 -0.8920 31 1 3.6580 -3.1512 0.8879 32 1 5.9150 -2.1233 0.8891 33 1 5.9149 -2.1217 -0.8909 34 1 5.4097 -4.7548 -0.0029 35 1 7.1841 -6.2717 -0.0037 36 1 10.8623 -5.8840 1.4297 37 1 9.5120 -4.8239 1.9000 38 1 9.4811 -6.8899 3.0987 39 1 8.9358 -7.9312 -0.0794 40 1 10.5787 -7.4168 -0.5319 41 1 9.9719 -9.1765 -2.1023 42 1 8.2969 -9.0887 -2.7433 43 1 9.0165 -8.0567 -4.7991 44 1 10.4277 -9.1174 -4.4666 45 1 10.8102 -6.4471 -4.7248 46 1 11.6681 -7.3374 -3.4321 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000884124338.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:48:07 Heat of formation + Delta-G solvation = -176.130853 kcal Electronic energy + Delta-G solvation = -24602.197054 eV Core-core repulsion = 20910.898566 eV Total energy + Delta-G solvation = -3691.298487 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 300.188 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.27748 -40.33713 -38.33807 -36.96397 -35.80369 -35.12852 -33.51984 -33.07363 -32.28903 -29.96880 -28.58520 -26.54668 -24.76784 -23.13289 -22.32715 -22.19783 -21.87651 -21.34168 -19.44490 -18.87790 -18.31852 -17.73283 -17.35601 -16.99006 -16.76229 -16.39567 -15.96481 -15.75060 -15.28684 -15.10753 -14.92464 -14.77135 -14.66962 -14.30701 -14.16894 -13.80204 -13.64569 -12.99965 -12.94306 -12.72564 -12.68754 -12.66048 -12.45165 -11.98405 -11.90143 -11.77677 -11.69808 -11.61574 -11.58188 -11.32841 -11.27235 -10.89202 -10.75722 -10.51108 -10.28043 -9.72549 -8.29057 -6.32768 1.37378 1.38740 1.50970 1.73957 2.18143 2.36869 2.94056 3.06683 3.31643 3.42034 3.61090 3.62835 3.99315 4.06097 4.11964 4.16798 4.22752 4.25159 4.41514 4.43739 4.48368 4.52047 4.64675 4.77847 4.82298 4.90089 4.90236 4.91555 4.94646 4.98738 5.04731 5.10501 5.18328 5.31209 5.42890 5.54184 5.56807 5.59418 5.65897 6.04864 6.16903 6.28069 6.74995 6.86469 7.13382 7.32050 7.61686 8.87348 Molecular weight = 300.19amu Principal moments of inertia in cm(-1) A = 0.019108 B = 0.002571 C = 0.002424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.003908 B =10890.195673 C =11546.368165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.005 3.995 3 Si 0.947 3.053 4 H -0.267 1.267 5 H -0.284 1.284 6 H -0.248 1.248 7 C -0.530 4.530 8 H 0.038 0.962 9 C -0.012 4.012 10 C -0.098 4.098 11 C 0.148 3.852 12 N -0.734 5.734 13 C 0.699 3.301 14 O -0.639 6.639 15 N -0.720 5.720 16 C 0.168 3.832 17 H 0.077 0.923 18 C 0.069 3.931 19 O -0.575 6.575 20 C -0.116 4.116 21 C 0.072 3.928 22 H 0.068 0.932 23 C -0.145 4.145 24 C -0.153 4.153 25 C 0.040 3.960 26 O -0.407 6.407 27 H 0.266 0.734 28 H 0.021 0.979 29 H 0.019 0.981 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.053 0.947 33 H 0.052 0.948 34 H 0.410 0.590 35 H 0.408 0.592 36 H 0.072 0.928 37 H 0.027 0.973 38 H 0.394 0.606 39 H 0.099 0.901 40 H 0.091 0.909 41 H 0.092 0.908 42 H 0.092 0.908 43 H 0.073 0.927 44 H 0.102 0.898 45 H 0.082 0.918 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.260 -22.531 -2.579 33.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.192 4.192 3 Si 0.770 3.230 4 H -0.193 1.193 5 H -0.210 1.210 6 H -0.172 1.172 7 C -0.568 4.568 8 H 0.056 0.944 9 C -0.050 4.050 10 C -0.136 4.136 11 C 0.023 3.977 12 N -0.389 5.389 13 C 0.398 3.602 14 O -0.521 6.521 15 N -0.376 5.376 16 C 0.062 3.938 17 H 0.095 0.905 18 C -0.010 4.010 19 O -0.383 6.383 20 C -0.154 4.154 21 C 0.015 3.985 22 H 0.086 0.914 23 C -0.183 4.183 24 C -0.191 4.191 25 C -0.036 4.036 26 O -0.327 6.327 27 H 0.075 0.925 28 H 0.039 0.961 29 H 0.037 0.963 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.246 0.754 35 H 0.244 0.756 36 H 0.090 0.910 37 H 0.045 0.955 38 H 0.244 0.756 39 H 0.118 0.882 40 H 0.109 0.891 41 H 0.110 0.890 42 H 0.111 0.889 43 H 0.092 0.908 44 H 0.120 0.880 45 H 0.100 0.900 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 25.565 -21.488 -3.112 33.541 hybrid contribution -0.589 0.467 0.489 0.896 sum 24.977 -21.021 -2.623 32.751 Atomic orbital electron populations 1.70057 1.08183 1.28126 1.52752 1.25975 0.95594 1.03402 0.94228 0.85705 0.79516 0.78545 0.79193 1.19255 1.20950 1.17200 1.21456 0.91838 0.93286 1.50186 0.94365 1.19464 0.94110 0.94630 0.96794 1.21463 0.91888 0.98122 1.02130 1.21117 0.94045 0.81572 1.00955 1.45045 1.05074 1.09435 1.79370 1.16166 0.82644 0.83859 0.77497 1.90874 1.56136 1.44917 1.60176 1.44942 1.08309 1.05144 1.79166 1.20886 0.79829 0.98634 0.94407 0.90532 1.22529 0.97207 0.89143 0.92160 1.86381 1.72367 1.51210 1.28333 1.22082 1.03825 0.95369 0.94091 1.22888 0.93905 0.90315 0.91423 0.91392 1.23181 1.03547 0.95664 0.95880 1.23266 1.00025 0.98391 0.97414 1.23557 0.95495 0.93007 0.91578 1.88476 1.58536 1.35235 1.50482 0.92499 0.96099 0.96256 0.91741 0.91711 0.92896 0.92918 0.75448 0.75561 0.91026 0.95500 0.75638 0.88231 0.89095 0.88959 0.88892 0.90816 0.87997 0.89961 0.91256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.94 13.96 21.45 0.30 -59.64 16 2 C 0.00 0.28 5.47 84.65 0.46 0.75 16 3 Si 0.95 45.10 27.47 68.60 1.88 46.98 16 4 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 5 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 6 H -0.25 -11.12 6.54 99.48 0.65 -10.47 16 7 C -0.53 -30.51 9.66 25.60 0.25 -30.27 16 8 H 0.04 2.38 7.99 -2.91 -0.02 2.36 16 9 C -0.01 -0.56 4.04 29.85 0.12 -0.44 16 10 C -0.10 -3.67 5.27 30.59 0.16 -3.51 16 11 C 0.15 5.03 5.67 86.38 0.49 5.52 16 12 N -0.73 -20.82 5.56 -478.54 -2.66 -23.48 16 13 C 0.70 21.47 8.53 179.06 1.53 23.00 16 14 O -0.64 -25.42 16.01 -4.00 -0.06 -25.48 16 15 N -0.72 -15.92 4.40 -457.82 -2.02 -17.94 16 16 C 0.17 3.45 2.33 44.99 0.10 3.55 16 17 H 0.08 2.08 7.19 -2.39 -0.02 2.06 16 18 C 0.07 1.25 6.85 71.98 0.49 1.74 16 19 O -0.58 -8.58 12.83 -148.98 -1.91 -10.49 16 20 C -0.12 -1.63 4.04 30.59 0.12 -1.51 16 21 C 0.07 1.13 3.46 31.06 0.11 1.24 16 22 H 0.07 1.22 7.63 -2.39 -0.02 1.20 16 23 C -0.15 -1.41 6.54 31.86 0.21 -1.20 16 24 C -0.15 -1.52 7.16 32.05 0.23 -1.29 16 25 C 0.04 0.56 7.78 72.65 0.57 1.12 16 26 O -0.41 -8.64 10.55 -148.98 -1.57 -10.22 16 27 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 28 H 0.02 0.97 7.20 -2.39 -0.02 0.95 16 29 H 0.02 0.88 7.57 -2.38 -0.02 0.87 16 30 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 31 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 32 H 0.05 1.90 8.14 -2.38 -0.02 1.88 16 33 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.41 9.08 8.49 -92.71 -0.79 8.29 16 35 H 0.41 6.81 8.62 -92.71 -0.80 6.01 16 36 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.03 0.63 8.14 -2.39 -0.02 0.62 16 38 H 0.39 2.88 9.12 -74.05 -0.68 2.20 16 39 H 0.10 1.18 7.73 -2.39 -0.02 1.16 16 40 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.09 0.66 7.85 -2.39 -0.02 0.64 16 42 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 43 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 44 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 45 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 46 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 Total: -1.00 -77.88 373.72 -2.53 -80.41 By element: Atomic # 1 Polarization: 22.46 SS G_CDS: -1.33 Total: 21.13 kcal Atomic # 6 Polarization: -6.12 SS G_CDS: 4.84 Total: -1.28 kcal Atomic # 7 Polarization: -96.68 SS G_CDS: -4.38 Total: -101.05 kcal Atomic # 8 Polarization: -42.64 SS G_CDS: -3.55 Total: -46.19 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 1.88 Total: 46.98 kcal Total: -77.88 -2.53 -80.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884124338.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.720 kcal (2) G-P(sol) polarization free energy of solvation -77.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds