Wall clock time and date at job start Fri Apr 10 2020 17:48:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48501 * 109.47418 * 270.00370 * 3 2 1 5 5 H 1.48498 * 109.47091 * 30.00431 * 3 2 1 6 6 H 1.48508 * 109.47394 * 150.00196 * 3 2 1 7 7 C 1.37875 * 120.00192 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00135 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00046 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47184 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47127 * 180.02562 * 10 9 7 12 12 N 1.46496 * 109.46953 * 179.97438 * 11 10 9 13 13 C 1.34779 * 120.00107 * 180.02562 * 12 11 10 14 14 O 1.21588 * 119.99436 * 359.97438 * 13 12 11 15 15 N 1.34774 * 120.00239 * 180.02562 * 13 12 11 16 16 C 1.46506 * 119.99940 * 179.97438 * 15 13 12 17 17 H 1.08997 * 109.47066 * 35.00129 * 16 15 13 18 18 C 1.52998 * 109.46998 * 275.00061 * 16 15 13 19 19 O 1.42890 * 109.47650 * 295.00036 * 18 16 15 20 20 C 1.52997 * 109.46709 * 155.00347 * 16 15 13 21 21 C 1.53003 * 109.47011 * 294.99906 * 20 16 15 22 22 H 1.08995 * 109.86862 * 54.30518 * 21 20 16 23 23 C 1.54098 * 109.87809 * 175.30927 * 21 20 16 24 24 C 1.54810 * 104.19094 * 121.45264 * 23 21 20 25 25 C 1.55002 * 102.08871 * 20.88402 * 24 23 21 26 26 O 1.43746 * 109.88057 * 293.29466 * 21 20 16 27 27 H 0.96996 * 120.00505 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.46665 * 60.00499 * 9 7 2 29 29 H 1.08993 * 109.47304 * 300.00055 * 9 7 2 30 30 H 1.09001 * 109.46801 * 300.00442 * 10 9 7 31 31 H 1.09001 * 109.46998 * 60.00038 * 10 9 7 32 32 H 1.08996 * 109.46952 * 300.00302 * 11 10 9 33 33 H 1.09001 * 109.46832 * 60.00321 * 11 10 9 34 34 H 0.96999 * 120.00356 * 0.02562 * 12 11 10 35 35 H 0.96999 * 120.00223 * 0.02562 * 15 13 12 36 36 H 1.08999 * 109.46998 * 55.00523 * 18 16 15 37 37 H 1.09001 * 109.46718 * 175.00106 * 18 16 15 38 38 H 0.96694 * 114.00481 * 180.02562 * 19 18 16 39 39 H 1.08992 * 109.47456 * 55.00060 * 20 16 15 40 40 H 1.09004 * 109.46890 * 175.00242 * 20 16 15 41 41 H 1.08996 * 110.49183 * 240.13354 * 23 21 20 42 42 H 1.09001 * 110.48967 * 2.78113 * 23 21 20 43 43 H 1.09002 * 110.91121 * 139.07485 * 24 23 21 44 44 H 1.08993 * 110.91430 * 262.68699 * 24 23 21 45 45 H 1.09000 * 110.62096 * 81.47598 * 25 24 23 46 46 H 1.09002 * 110.61698 * 204.31673 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4805 -4.9871 -0.0012 12 7 2.4325 -6.1005 -0.0018 13 6 1.9833 -7.3713 -0.0030 14 8 0.7879 -7.5934 -0.0030 15 7 2.8592 -8.3956 -0.0030 16 6 2.3709 -9.7769 -0.0037 17 1 1.4564 -9.8387 -0.5935 18 6 2.0818 -10.2163 1.4331 19 8 3.3017 -10.2471 2.1764 20 6 3.4338 -10.6932 -0.6132 21 6 3.6329 -10.3335 -2.0869 22 1 3.8599 -9.2716 -2.1817 23 6 4.7832 -11.1702 -2.6797 24 6 4.1283 -11.9374 -3.8540 25 6 2.8724 -11.0765 -4.1442 26 8 2.4442 -10.6475 -2.8317 27 1 -0.4851 0.8400 0.0004 28 1 0.6242 -2.5567 -0.8904 29 1 0.6248 -2.5571 0.8896 30 1 2.8721 -3.6042 -0.8905 31 1 2.8721 -3.6043 0.8895 32 1 0.8535 -5.0450 0.8885 33 1 0.8542 -5.0446 -0.8914 34 1 3.3862 -5.9233 -0.0014 35 1 3.8128 -8.2184 -0.0018 36 1 1.3915 -9.5116 1.8966 37 1 1.6355 -11.2108 1.4260 38 1 3.1939 -10.5183 3.0983 39 1 4.3744 -10.5650 -0.0776 40 1 3.1085 -11.7305 -0.5331 41 1 5.5786 -10.5206 -3.0448 42 1 5.1698 -11.8677 -1.9367 43 1 4.7905 -11.9632 -4.7194 44 1 3.8469 -12.9459 -3.5511 45 1 3.1311 -10.2162 -4.7616 46 1 2.0997 -11.6752 -4.6265 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000884124339.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:48:09 Heat of formation + Delta-G solvation = -150.490144 kcal Electronic energy + Delta-G solvation = -24546.641363 eV Core-core repulsion = 20856.454741 eV Total energy + Delta-G solvation = -3690.186623 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 300.188 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.22291 -39.43297 -37.45385 -35.47401 -34.75056 -33.27465 -32.51100 -31.90720 -30.82760 -28.97929 -26.46694 -25.78774 -23.24000 -22.58601 -21.40166 -21.10509 -20.64047 -20.24846 -18.20442 -17.48038 -16.74521 -16.57479 -16.25903 -15.74902 -15.56476 -15.39430 -14.77872 -14.48375 -14.35027 -13.95610 -13.92559 -13.76483 -13.58015 -13.05415 -12.54917 -12.25622 -12.14312 -12.01363 -11.87057 -11.75250 -11.62617 -11.29996 -11.10278 -10.90122 -10.86065 -10.67442 -10.56375 -10.21355 -9.96471 -9.93442 -9.81315 -9.39477 -9.09116 -9.06190 -8.50671 -8.34464 -5.99071 -4.02023 2.91283 3.32467 3.38705 3.41635 3.46933 3.58956 4.12815 4.21165 4.23222 4.44097 4.50090 4.57827 4.65027 4.83634 4.92945 5.04091 5.14327 5.23560 5.30276 5.34708 5.36592 5.43397 5.45184 5.54314 5.64639 5.70549 5.75672 5.83863 5.87851 5.96772 6.24752 6.56511 6.61328 6.67480 6.68257 6.89010 7.08059 7.19061 7.40045 7.67364 7.80789 8.00245 8.26912 8.41321 8.87267 9.04782 9.61904 11.12284 Molecular weight = 300.19amu Principal moments of inertia in cm(-1) A = 0.019115 B = 0.002461 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.446004 B =11373.331871 C =12118.295613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.521 4.521 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.120 4.120 11 C 0.136 3.864 12 N -0.742 5.742 13 C 0.701 3.299 14 O -0.595 6.595 15 N -0.739 5.739 16 C 0.171 3.829 17 H 0.107 0.893 18 C 0.061 3.939 19 O -0.571 6.571 20 C -0.118 4.118 21 C 0.074 3.926 22 H 0.070 0.930 23 C -0.153 4.153 24 C -0.155 4.155 25 C 0.045 3.955 26 O -0.369 6.369 27 H 0.261 0.739 28 H 0.019 0.981 29 H 0.019 0.981 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.393 0.607 35 H 0.394 0.606 36 H 0.054 0.946 37 H 0.051 0.949 38 H 0.376 0.624 39 H 0.088 0.912 40 H 0.082 0.918 41 H 0.075 0.925 42 H 0.079 0.921 43 H 0.078 0.922 44 H 0.076 0.924 45 H 0.060 0.940 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.912 -27.521 -2.881 29.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.560 4.560 8 H 0.073 0.927 9 C -0.014 4.014 10 C -0.158 4.158 11 C 0.013 3.987 12 N -0.397 5.397 13 C 0.401 3.599 14 O -0.473 6.473 15 N -0.394 5.394 16 C 0.065 3.935 17 H 0.125 0.875 18 C -0.018 4.018 19 O -0.376 6.376 20 C -0.156 4.156 21 C 0.017 3.983 22 H 0.088 0.912 23 C -0.190 4.190 24 C -0.193 4.193 25 C -0.032 4.032 26 O -0.288 6.288 27 H 0.071 0.929 28 H 0.038 0.962 29 H 0.037 0.963 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.226 0.774 35 H 0.227 0.773 36 H 0.073 0.927 37 H 0.069 0.931 38 H 0.223 0.777 39 H 0.106 0.894 40 H 0.101 0.899 41 H 0.094 0.906 42 H 0.097 0.903 43 H 0.097 0.903 44 H 0.095 0.905 45 H 0.078 0.922 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 9.641 -27.371 -3.381 29.215 hybrid contribution 1.286 0.950 0.453 1.662 sum 10.927 -26.420 -2.928 28.740 Atomic orbital electron populations 1.69965 1.06050 1.26652 1.50634 1.25031 0.94855 0.99282 0.95337 0.86585 0.79791 0.83474 0.78070 1.20677 1.21220 1.19918 1.21210 0.92978 0.90969 1.50813 0.92675 1.19028 0.93869 0.90814 0.97676 1.21884 0.99758 0.93388 1.00765 1.21480 0.91304 0.84184 1.01779 1.45372 1.10341 1.04499 1.79450 1.16029 0.85341 0.80788 0.77759 1.90907 1.14163 1.84131 1.58130 1.45084 1.08815 1.04758 1.80791 1.20829 0.98882 0.79964 0.93793 0.87529 1.22729 0.86465 0.99680 0.92966 1.86425 1.32253 1.92046 1.26868 1.21974 1.00283 1.00008 0.93312 1.22796 0.84809 0.98770 0.91975 0.91180 1.23017 0.98400 0.99372 0.98247 1.23125 0.97617 0.99924 0.98640 1.23570 0.96293 0.97195 0.86133 1.88976 1.28562 1.86983 1.24303 0.92944 0.96247 0.96261 0.92829 0.92811 0.92081 0.92033 0.77423 0.77261 0.92728 0.93062 0.77707 0.89364 0.89897 0.90613 0.90260 0.90322 0.90549 0.92197 0.89039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.14 13.29 55.43 0.74 -26.40 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.52 -14.75 9.11 -34.44 -0.31 -15.07 16 8 H 0.05 1.50 7.74 -52.48 -0.41 1.09 16 9 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 10 C -0.12 -2.41 5.27 -26.73 -0.14 -2.56 16 11 C 0.14 2.53 5.67 -4.05 -0.02 2.50 16 12 N -0.74 -11.42 5.56 -65.23 -0.36 -11.78 16 13 C 0.70 11.34 8.53 -86.92 -0.74 10.59 16 14 O -0.59 -12.12 16.01 5.29 0.08 -12.04 16 15 N -0.74 -8.81 4.40 -58.67 -0.26 -9.07 16 16 C 0.17 1.89 2.33 -67.93 -0.16 1.73 16 17 H 0.11 1.46 7.21 -51.93 -0.37 1.09 16 18 C 0.06 0.61 6.85 37.16 0.25 0.86 16 19 O -0.57 -5.07 12.83 -35.23 -0.45 -5.52 16 20 C -0.12 -0.98 3.96 -26.73 -0.11 -1.09 16 21 C 0.07 0.66 3.35 -26.16 -0.09 0.57 16 22 H 0.07 0.68 7.63 -51.93 -0.40 0.28 16 23 C -0.15 -0.99 6.64 -25.20 -0.17 -1.16 16 24 C -0.16 -0.95 7.16 -24.72 -0.18 -1.13 16 25 C 0.04 0.36 7.72 38.22 0.29 0.65 16 26 O -0.37 -4.10 10.76 -35.23 -0.38 -4.48 16 27 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 28 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 31 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.39 4.89 8.49 -40.82 -0.35 4.54 16 35 H 0.39 3.77 8.62 -40.82 -0.35 3.42 16 36 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.38 1.92 9.12 45.56 0.42 2.34 16 39 H 0.09 0.67 7.73 -51.93 -0.40 0.27 16 40 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 42 H 0.08 0.44 7.70 -51.93 -0.40 0.04 16 43 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 45 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 46 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 LS Contribution 377.23 15.07 5.68 5.68 Total: -1.00 -35.11 377.23 -8.88 -43.99 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: -7.31 Total: 5.02 kcal Atomic # 6 Polarization: -0.47 SS G_CDS: -1.60 Total: -2.07 kcal Atomic # 7 Polarization: -47.37 SS G_CDS: 0.12 Total: -47.26 kcal Atomic # 8 Polarization: -21.29 SS G_CDS: -0.75 Total: -22.04 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.11 -8.88 -43.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884124339.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.501 kcal (2) G-P(sol) polarization free energy of solvation -35.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds