Wall clock time and date at job start Fri Apr 10 2020 17:48:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 119.99828 * 2 1 4 4 H 1.48501 * 109.47418 * 270.00370 * 3 2 1 5 5 H 1.48498 * 109.47091 * 30.00431 * 3 2 1 6 6 H 1.48508 * 109.47394 * 150.00196 * 3 2 1 7 7 C 1.37875 * 120.00192 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00135 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00046 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47184 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47127 * 180.02562 * 10 9 7 12 12 N 1.46496 * 109.46953 * 179.97438 * 11 10 9 13 13 C 1.34779 * 120.00107 * 180.02562 * 12 11 10 14 14 O 1.21588 * 119.99436 * 359.97438 * 13 12 11 15 15 N 1.34774 * 120.00239 * 180.02562 * 13 12 11 16 16 C 1.46506 * 119.99940 * 179.97438 * 15 13 12 17 17 H 1.08997 * 109.47066 * 35.00129 * 16 15 13 18 18 C 1.52998 * 109.46998 * 275.00061 * 16 15 13 19 19 O 1.42890 * 109.47650 * 295.00036 * 18 16 15 20 20 C 1.52997 * 109.46709 * 155.00347 * 16 15 13 21 21 C 1.53003 * 109.47011 * 294.99906 * 20 16 15 22 22 H 1.08995 * 109.86862 * 54.30518 * 21 20 16 23 23 C 1.54098 * 109.87809 * 175.30927 * 21 20 16 24 24 C 1.54810 * 104.19094 * 121.45264 * 23 21 20 25 25 C 1.55002 * 102.08871 * 20.88402 * 24 23 21 26 26 O 1.43746 * 109.88057 * 293.29466 * 21 20 16 27 27 H 0.96996 * 120.00505 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.46665 * 60.00499 * 9 7 2 29 29 H 1.08993 * 109.47304 * 300.00055 * 9 7 2 30 30 H 1.09001 * 109.46801 * 300.00442 * 10 9 7 31 31 H 1.09001 * 109.46998 * 60.00038 * 10 9 7 32 32 H 1.08996 * 109.46952 * 300.00302 * 11 10 9 33 33 H 1.09001 * 109.46832 * 60.00321 * 11 10 9 34 34 H 0.96999 * 120.00356 * 0.02562 * 12 11 10 35 35 H 0.96999 * 120.00223 * 0.02562 * 15 13 12 36 36 H 1.08999 * 109.46998 * 55.00523 * 18 16 15 37 37 H 1.09001 * 109.46718 * 175.00106 * 18 16 15 38 38 H 0.96694 * 114.00481 * 180.02562 * 19 18 16 39 39 H 1.08992 * 109.47456 * 55.00060 * 20 16 15 40 40 H 1.09004 * 109.46890 * 175.00242 * 20 16 15 41 41 H 1.08996 * 110.49183 * 240.13354 * 23 21 20 42 42 H 1.09001 * 110.48967 * 2.78113 * 23 21 20 43 43 H 1.09002 * 110.91121 * 139.07485 * 24 23 21 44 44 H 1.08993 * 110.91430 * 262.68699 * 24 23 21 45 45 H 1.09000 * 110.62096 * 81.47598 * 25 24 23 46 46 H 1.09002 * 110.61698 * 204.31673 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 6 1.4805 -4.9871 -0.0012 12 7 2.4325 -6.1005 -0.0018 13 6 1.9833 -7.3713 -0.0030 14 8 0.7879 -7.5934 -0.0030 15 7 2.8592 -8.3956 -0.0030 16 6 2.3709 -9.7769 -0.0037 17 1 1.4564 -9.8387 -0.5935 18 6 2.0818 -10.2163 1.4331 19 8 3.3017 -10.2471 2.1764 20 6 3.4338 -10.6932 -0.6132 21 6 3.6329 -10.3335 -2.0869 22 1 3.8599 -9.2716 -2.1817 23 6 4.7832 -11.1702 -2.6797 24 6 4.1283 -11.9374 -3.8540 25 6 2.8724 -11.0765 -4.1442 26 8 2.4442 -10.6475 -2.8317 27 1 -0.4851 0.8400 0.0004 28 1 0.6242 -2.5567 -0.8904 29 1 0.6248 -2.5571 0.8896 30 1 2.8721 -3.6042 -0.8905 31 1 2.8721 -3.6043 0.8895 32 1 0.8535 -5.0450 0.8885 33 1 0.8542 -5.0446 -0.8914 34 1 3.3862 -5.9233 -0.0014 35 1 3.8128 -8.2184 -0.0018 36 1 1.3915 -9.5116 1.8966 37 1 1.6355 -11.2108 1.4260 38 1 3.1939 -10.5183 3.0983 39 1 4.3744 -10.5650 -0.0776 40 1 3.1085 -11.7305 -0.5331 41 1 5.5786 -10.5206 -3.0448 42 1 5.1698 -11.8677 -1.9367 43 1 4.7905 -11.9632 -4.7194 44 1 3.8469 -12.9459 -3.5511 45 1 3.1311 -10.2162 -4.7616 46 1 2.0997 -11.6752 -4.6265 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000884124339.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:48:09 Heat of formation + Delta-G solvation = -178.424059 kcal Electronic energy + Delta-G solvation = -24547.852669 eV Core-core repulsion = 20856.454741 eV Total energy + Delta-G solvation = -3691.397928 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 300.188 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.28068 -40.30087 -38.34301 -36.94039 -35.81861 -35.17734 -33.42517 -33.00680 -32.17204 -29.87582 -28.29767 -26.45405 -25.04027 -23.29400 -22.38019 -22.28645 -21.82259 -21.46158 -19.41579 -18.52908 -18.30359 -17.51415 -17.24792 -16.81583 -16.64812 -16.42797 -16.28493 -15.89313 -15.55732 -15.28118 -14.91103 -14.57130 -14.48281 -14.27099 -13.78699 -13.71229 -13.53011 -13.19022 -12.86478 -12.74361 -12.57835 -12.54473 -12.51919 -12.35864 -11.93194 -11.70801 -11.66743 -11.63257 -11.49081 -11.30012 -11.14898 -10.88562 -10.66258 -10.55111 -10.31645 -9.73999 -8.18970 -6.30655 1.41760 1.43496 1.54396 1.72352 2.16907 2.42391 2.97795 3.14646 3.31593 3.41647 3.59155 3.67855 4.03197 4.04649 4.11534 4.17877 4.23435 4.26760 4.41391 4.44361 4.49169 4.56435 4.64584 4.73081 4.82297 4.89590 4.96038 4.96235 4.98164 5.03604 5.11326 5.16771 5.18185 5.27617 5.47695 5.54946 5.58232 5.71335 5.84591 6.01628 6.04691 6.23096 6.86599 6.86840 7.13765 7.38860 7.61135 8.93339 Molecular weight = 300.19amu Principal moments of inertia in cm(-1) A = 0.019115 B = 0.002461 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.446004 B =11373.331871 C =12118.295613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.005 4.005 3 Si 0.969 3.031 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.260 1.260 7 C -0.540 4.540 8 H 0.067 0.933 9 C 0.024 3.976 10 C -0.099 4.099 11 C 0.151 3.849 12 N -0.731 5.731 13 C 0.698 3.302 14 O -0.641 6.641 15 N -0.719 5.719 16 C 0.166 3.834 17 H 0.075 0.925 18 C 0.069 3.931 19 O -0.574 6.574 20 C -0.104 4.104 21 C 0.068 3.932 22 H 0.058 0.942 23 C -0.148 4.148 24 C -0.149 4.149 25 C 0.034 3.966 26 O -0.402 6.402 27 H 0.263 0.737 28 H -0.009 1.009 29 H -0.008 1.008 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.045 0.955 33 H 0.044 0.956 34 H 0.411 0.589 35 H 0.409 0.591 36 H 0.026 0.974 37 H 0.073 0.927 38 H 0.395 0.605 39 H 0.103 0.897 40 H 0.093 0.907 41 H 0.084 0.916 42 H 0.093 0.907 43 H 0.094 0.906 44 H 0.081 0.919 45 H 0.057 0.943 46 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.053 -28.467 -2.806 31.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.202 4.202 3 Si 0.793 3.207 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.184 1.184 7 C -0.578 4.578 8 H 0.085 0.915 9 C -0.014 4.014 10 C -0.137 4.137 11 C 0.026 3.974 12 N -0.387 5.387 13 C 0.397 3.603 14 O -0.523 6.523 15 N -0.375 5.375 16 C 0.061 3.939 17 H 0.093 0.907 18 C -0.010 4.010 19 O -0.382 6.382 20 C -0.142 4.142 21 C 0.010 3.990 22 H 0.076 0.924 23 C -0.185 4.185 24 C -0.186 4.186 25 C -0.042 4.042 26 O -0.322 6.322 27 H 0.072 0.928 28 H 0.010 0.990 29 H 0.010 0.990 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.247 0.753 35 H 0.245 0.755 36 H 0.044 0.956 37 H 0.091 0.909 38 H 0.244 0.756 39 H 0.122 0.878 40 H 0.111 0.889 41 H 0.103 0.897 42 H 0.112 0.888 43 H 0.113 0.887 44 H 0.100 0.900 45 H 0.075 0.925 46 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 12.862 -28.356 -3.295 31.311 hybrid contribution 0.272 1.185 0.430 1.289 sum 13.134 -27.172 -2.865 30.315 Atomic orbital electron populations 1.70115 1.07986 1.27810 1.51708 1.26045 0.95759 1.03622 0.94784 0.85395 0.78671 0.78185 0.78464 1.19795 1.21026 1.18376 1.21677 0.93753 0.91959 1.50436 0.91488 1.18942 0.94444 0.92975 0.95047 1.21581 0.98414 0.91636 1.02085 1.21050 0.91358 0.84724 1.00265 1.45022 1.10735 1.03592 1.79328 1.16195 0.85132 0.81420 0.77515 1.90879 1.16440 1.84806 1.60154 1.44926 1.09025 1.04312 1.79191 1.20910 0.98738 0.79738 0.94523 0.90668 1.22514 0.86460 0.99970 0.92062 1.86368 1.31324 1.92206 1.28314 1.21910 0.99776 0.99586 0.92929 1.22899 0.85217 0.98645 0.92224 0.92450 1.23009 0.97548 0.99406 0.98558 1.23114 0.96716 0.99640 0.99168 1.23756 0.97646 0.97658 0.85129 1.88951 1.30241 1.87273 1.25716 0.92805 0.99013 0.98977 0.91386 0.91350 0.93663 0.93767 0.75316 0.75473 0.95598 0.90940 0.75599 0.87845 0.88881 0.89710 0.88843 0.88719 0.89981 0.92483 0.88441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.98 13.29 21.45 0.28 -57.69 16 2 C 0.00 -0.27 5.46 84.65 0.46 0.20 16 3 Si 0.97 44.23 29.54 68.60 2.03 46.25 16 4 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 5 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 6 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 7 C -0.54 -30.58 9.11 25.60 0.23 -30.35 16 8 H 0.07 3.55 7.74 -2.91 -0.02 3.53 16 9 C 0.02 1.26 4.97 29.85 0.15 1.41 16 10 C -0.10 -3.96 5.27 30.60 0.16 -3.80 16 11 C 0.15 5.71 5.67 86.38 0.49 6.20 16 12 N -0.73 -22.11 5.56 -478.55 -2.66 -24.77 16 13 C 0.70 22.71 8.53 179.05 1.53 24.24 16 14 O -0.64 -27.11 16.01 -3.99 -0.06 -27.18 16 15 N -0.72 -16.66 4.40 -457.81 -2.02 -18.67 16 16 C 0.17 3.60 2.33 44.99 0.10 3.70 16 17 H 0.08 2.15 7.21 -2.39 -0.02 2.13 16 18 C 0.07 1.33 6.85 71.98 0.49 1.82 16 19 O -0.57 -8.90 12.83 -148.98 -1.91 -10.81 16 20 C -0.10 -1.55 3.96 30.59 0.12 -1.43 16 21 C 0.07 1.12 3.35 30.97 0.10 1.22 16 22 H 0.06 1.06 7.63 -2.39 -0.02 1.04 16 23 C -0.15 -1.54 6.64 31.58 0.21 -1.33 16 24 C -0.15 -1.50 7.16 31.90 0.23 -1.27 16 25 C 0.03 0.53 7.72 72.67 0.56 1.09 16 26 O -0.40 -8.89 10.76 -148.98 -1.60 -10.49 16 27 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 28 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 29 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 30 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 31 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 32 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.04 1.82 8.14 -2.39 -0.02 1.81 16 34 H 0.41 9.45 8.49 -92.71 -0.79 8.66 16 35 H 0.41 7.07 8.62 -92.71 -0.80 6.27 16 36 H 0.03 0.64 8.14 -2.39 -0.02 0.63 16 37 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.39 3.09 9.12 -74.06 -0.68 2.41 16 39 H 0.10 1.26 7.73 -2.39 -0.02 1.24 16 40 H 0.09 1.24 8.14 -2.38 -0.02 1.22 16 41 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 42 H 0.09 0.73 7.70 -2.39 -0.02 0.71 16 43 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 44 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 45 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 46 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 Total: -1.00 -77.83 377.23 -2.38 -80.21 By element: Atomic # 1 Polarization: 22.74 SS G_CDS: -1.28 Total: 21.46 kcal Atomic # 6 Polarization: -3.16 SS G_CDS: 4.84 Total: 1.68 kcal Atomic # 7 Polarization: -96.74 SS G_CDS: -4.39 Total: -101.13 kcal Atomic # 8 Polarization: -44.90 SS G_CDS: -3.58 Total: -48.48 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.25 kcal Total: -77.83 -2.38 -80.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884124339.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.214 kcal (2) G-P(sol) polarization free energy of solvation -77.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds