Wall clock time and date at job start Fri Apr 10 2020 17:48:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00282 * 2 1 4 4 H 1.48503 * 109.47407 * 89.99943 * 3 2 1 5 5 H 1.48505 * 109.47281 * 209.99699 * 3 2 1 6 6 H 1.48501 * 109.47274 * 329.99797 * 3 2 1 7 7 C 1.37884 * 119.99707 * 180.27224 * 2 1 3 8 8 H 1.07999 * 120.00052 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00126 * 180.02562 * 7 2 1 10 10 C 1.52993 * 109.47432 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.47481 * 179.97438 * 10 9 7 12 12 N 1.46497 * 109.47006 * 180.02562 * 11 10 9 13 13 C 1.34779 * 119.99802 * 179.97438 * 12 11 10 14 14 O 1.21595 * 119.99936 * 0.02562 * 13 12 11 15 15 N 1.34775 * 120.00115 * 179.97438 * 13 12 11 16 16 C 1.46497 * 119.99918 * 179.97438 * 15 13 12 17 17 H 1.09003 * 109.47237 * 35.01074 * 16 15 13 18 18 C 1.52998 * 109.47785 * 275.00407 * 16 15 13 19 19 O 1.42894 * 109.47211 * 295.00305 * 18 16 15 20 20 C 1.53001 * 109.46933 * 155.00332 * 16 15 13 21 21 C 1.53001 * 109.47306 * 295.00164 * 20 16 15 22 22 H 1.08995 * 109.82423 * 305.56860 * 21 20 16 23 23 C 1.54382 * 109.83073 * 184.58753 * 21 20 16 24 24 C 1.55310 * 102.25223 * 219.13164 * 23 21 20 25 25 C 1.54952 * 100.93980 * 34.13092 * 24 23 21 26 26 O 1.43243 * 109.82970 * 66.45109 * 21 20 16 27 27 H 0.97005 * 119.99656 * 359.72615 * 1 2 3 28 28 H 1.08996 * 109.47197 * 300.00354 * 9 7 2 29 29 H 1.09004 * 109.47476 * 59.99997 * 9 7 2 30 30 H 1.08996 * 109.47340 * 300.00415 * 10 9 7 31 31 H 1.09000 * 109.46925 * 60.00107 * 10 9 7 32 32 H 1.09001 * 109.46611 * 300.00296 * 11 10 9 33 33 H 1.09000 * 109.46866 * 60.00179 * 11 10 9 34 34 H 0.96996 * 120.00353 * 0.02562 * 12 11 10 35 35 H 0.96996 * 120.00041 * 0.02562 * 15 13 12 36 36 H 1.09003 * 109.47081 * 54.99923 * 18 16 15 37 37 H 1.09000 * 109.47555 * 175.00023 * 18 16 15 38 38 H 0.96699 * 114.00712 * 179.97438 * 19 18 16 39 39 H 1.08995 * 109.46975 * 55.00363 * 20 16 15 40 40 H 1.09006 * 109.47217 * 175.00451 * 20 16 15 41 41 H 1.08999 * 110.84713 * 337.31930 * 23 21 20 42 42 H 1.09001 * 110.84609 * 100.94261 * 23 21 20 43 43 H 1.08997 * 111.12445 * 276.21896 * 24 23 21 44 44 H 1.08994 * 111.16420 * 152.06845 * 24 23 21 45 45 H 1.08999 * 110.30665 * 204.63708 * 25 24 23 46 46 H 1.09004 * 110.39242 * 82.51671 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4400 -0.7000 6 1 1.4467 2.6526 -0.7001 7 6 2.0045 -1.1941 -0.0057 8 1 1.4645 -2.1294 -0.0105 9 6 3.5115 -1.1942 -0.0051 10 6 4.0214 -2.6367 -0.0114 11 6 5.5515 -2.6368 -0.0115 12 7 6.0397 -4.0180 -0.0182 13 6 7.3647 -4.2644 -0.0199 14 8 8.1549 -3.3402 -0.0155 15 7 7.8139 -5.5351 -0.0255 16 6 9.2542 -5.8028 -0.0280 17 1 9.7659 -5.0441 0.5642 18 6 9.7774 -5.7665 -1.4653 19 8 9.1929 -6.8353 -2.2121 20 6 9.5172 -7.1839 0.5757 21 6 9.1083 -7.1823 2.0500 22 1 9.6142 -6.3709 2.5731 23 6 9.4763 -8.5349 2.6970 24 6 8.2591 -8.7984 3.6250 25 6 7.1120 -8.1769 2.7890 26 8 7.6892 -7.0214 2.1605 27 1 -0.4850 0.8401 0.0040 28 1 3.8752 -0.6760 -0.8923 29 1 3.8746 -0.6849 0.8876 30 1 3.6577 -3.1546 0.8760 31 1 3.6584 -3.1464 -0.9039 32 1 5.9147 -2.1190 -0.8992 33 1 5.9148 -2.1269 0.8808 34 1 5.4093 -4.7552 -0.0221 35 1 7.1836 -6.2723 -0.0287 36 1 9.5116 -4.8144 -1.9248 37 1 10.8617 -5.8772 -1.4602 38 1 9.4799 -6.8735 -3.1348 39 1 8.9352 -7.9322 0.0379 40 1 10.5781 -7.4205 0.4931 41 1 9.5639 -9.3154 1.9411 42 1 10.3952 -8.4502 3.2771 43 1 8.3736 -8.2833 4.5787 44 1 8.1022 -9.8665 3.7744 45 1 6.2875 -7.8823 3.4382 46 1 6.7651 -8.8839 2.0353 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000884124340.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:48:12 Heat of formation + Delta-G solvation = -145.764951 kcal Electronic energy + Delta-G solvation = -24914.511480 eV Core-core repulsion = 21224.529757 eV Total energy + Delta-G solvation = -3689.981723 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 300.188 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.23611 -39.39671 -37.44770 -35.49719 -34.68647 -33.22494 -32.57937 -31.88440 -31.01741 -29.02256 -26.81862 -25.88189 -23.09652 -22.29287 -21.58089 -20.94432 -20.59952 -20.11742 -18.08795 -17.47741 -17.23942 -16.73244 -16.32591 -16.08477 -15.42020 -14.98470 -14.71630 -14.45936 -14.15163 -13.90391 -13.80780 -13.74665 -13.56069 -13.31898 -12.65082 -12.45565 -12.27381 -12.04432 -11.92166 -11.82241 -11.64070 -11.45849 -11.18012 -10.97056 -10.94724 -10.82242 -10.23957 -10.11647 -9.89831 -9.75537 -9.72369 -9.58152 -9.16620 -8.97721 -8.50819 -8.44442 -6.01683 -3.99787 2.98514 3.35446 3.42569 3.47991 3.52206 3.55446 4.10632 4.13881 4.24208 4.49145 4.50292 4.54611 4.75413 4.79741 4.87356 5.05524 5.13022 5.17725 5.29495 5.32724 5.33148 5.42900 5.45602 5.54135 5.56921 5.64910 5.69506 5.74456 5.81307 5.98748 6.15594 6.52680 6.57868 6.70438 6.80519 6.83525 6.97300 7.26772 7.32342 7.39046 7.44603 7.81570 8.35829 8.55870 8.93525 9.02747 9.60952 11.11674 Molecular weight = 300.19amu Principal moments of inertia in cm(-1) A = 0.018550 B = 0.002806 C = 0.002571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.091815 B = 9977.299473 C =10886.416656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.066 3.934 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.264 1.264 6 H -0.288 1.288 7 C -0.520 4.520 8 H 0.072 0.928 9 C -0.011 4.011 10 C -0.112 4.112 11 C 0.135 3.865 12 N -0.741 5.741 13 C 0.704 3.296 14 O -0.607 6.607 15 N -0.723 5.723 16 C 0.174 3.826 17 H 0.096 0.904 18 C 0.060 3.940 19 O -0.569 6.569 20 C -0.132 4.132 21 C 0.080 3.920 22 H 0.079 0.921 23 C -0.151 4.151 24 C -0.157 4.157 25 C 0.047 3.953 26 O -0.366 6.366 27 H 0.263 0.737 28 H 0.018 0.982 29 H 0.014 0.986 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.395 0.605 35 H 0.400 0.600 36 H 0.054 0.946 37 H 0.049 0.951 38 H 0.376 0.624 39 H 0.082 0.918 40 H 0.084 0.916 41 H 0.078 0.922 42 H 0.080 0.920 43 H 0.077 0.923 44 H 0.080 0.920 45 H 0.084 0.916 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.850 -21.399 2.413 31.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.135 4.135 3 Si 0.707 3.293 4 H -0.203 1.203 5 H -0.188 1.188 6 H -0.214 1.214 7 C -0.558 4.558 8 H 0.090 0.910 9 C -0.049 4.049 10 C -0.151 4.151 11 C 0.011 3.989 12 N -0.395 5.395 13 C 0.404 3.596 14 O -0.486 6.486 15 N -0.379 5.379 16 C 0.068 3.932 17 H 0.114 0.886 18 C -0.019 4.019 19 O -0.374 6.374 20 C -0.170 4.170 21 C 0.022 3.978 22 H 0.097 0.903 23 C -0.189 4.189 24 C -0.195 4.195 25 C -0.029 4.029 26 O -0.285 6.285 27 H 0.072 0.928 28 H 0.037 0.963 29 H 0.033 0.967 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.078 0.922 34 H 0.228 0.772 35 H 0.235 0.765 36 H 0.072 0.928 37 H 0.068 0.932 38 H 0.222 0.778 39 H 0.101 0.899 40 H 0.103 0.897 41 H 0.096 0.904 42 H 0.099 0.901 43 H 0.096 0.904 44 H 0.099 0.901 45 H 0.103 0.897 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 23.011 -20.340 2.926 30.851 hybrid contribution 0.154 0.155 -0.439 0.490 sum 23.165 -20.184 2.487 30.825 Atomic orbital electron populations 1.69919 1.06321 1.26887 1.51248 1.25031 0.94744 0.99233 0.94527 0.86772 0.80435 0.83500 0.78578 1.20266 1.18837 1.21433 1.21119 0.89389 0.94483 1.50811 0.91025 1.19499 0.97156 0.91609 0.96629 1.21694 0.90909 1.00816 1.01633 1.21447 0.95499 0.80387 1.01533 1.45257 1.04969 1.09772 1.79514 1.15994 0.82891 0.83190 0.77540 1.90876 1.55154 1.43531 1.59087 1.44886 1.06993 1.06199 1.79774 1.20733 0.81821 0.97036 0.93654 0.88576 1.22738 0.95884 0.90160 0.93112 1.86455 1.72157 1.52197 1.26591 1.22205 1.02266 0.97449 0.95129 1.22780 0.82687 0.97025 0.95269 0.90319 1.23182 0.99121 0.97429 0.99141 1.23255 0.94942 1.01940 0.99314 1.23390 0.96219 0.88043 0.95298 1.88534 1.19263 1.39779 1.80958 0.92758 0.96329 0.96747 0.92194 0.92229 0.92255 0.92185 0.77216 0.76520 0.92783 0.93237 0.77775 0.89922 0.89727 0.90364 0.90150 0.90432 0.90098 0.89739 0.92299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.25 13.96 55.43 0.77 -27.47 16 2 C 0.07 1.94 5.47 -17.82 -0.10 1.85 16 3 Si 0.88 22.19 27.47 -169.99 -4.67 17.52 16 4 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.26 -6.43 6.53 56.52 0.37 -6.06 16 6 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 7 C -0.52 -15.00 9.66 -34.44 -0.33 -15.33 16 8 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 9 C -0.01 -0.27 4.04 -27.89 -0.11 -0.38 16 10 C -0.11 -2.22 5.27 -26.73 -0.14 -2.36 16 11 C 0.13 2.44 5.67 -4.04 -0.02 2.42 16 12 N -0.74 -11.57 5.56 -65.22 -0.36 -11.93 16 13 C 0.70 11.43 8.53 -86.92 -0.74 10.69 16 14 O -0.61 -12.05 16.01 5.28 0.08 -11.96 16 15 N -0.72 -8.95 3.88 -58.68 -0.23 -9.18 16 16 C 0.17 1.82 2.37 -67.93 -0.16 1.66 16 17 H 0.10 1.14 7.58 -51.93 -0.39 0.74 16 18 C 0.06 0.57 6.85 37.16 0.25 0.83 16 19 O -0.57 -5.05 12.83 -35.23 -0.45 -5.50 16 20 C -0.13 -1.02 4.13 -26.73 -0.11 -1.13 16 21 C 0.08 0.65 3.52 -26.01 -0.09 0.56 16 22 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 23 C -0.15 -0.88 6.54 -24.78 -0.16 -1.04 16 24 C -0.16 -0.93 7.16 -24.48 -0.18 -1.11 16 25 C 0.05 0.36 7.78 38.19 0.30 0.66 16 26 O -0.37 -3.71 8.92 -35.23 -0.31 -4.02 16 27 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 28 H 0.02 0.45 7.19 -51.93 -0.37 0.08 16 29 H 0.01 0.34 7.58 -51.93 -0.39 -0.05 16 30 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.39 5.23 8.49 -40.82 -0.35 4.88 16 35 H 0.40 4.53 7.73 -40.82 -0.32 4.21 16 36 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.38 1.89 9.12 45.56 0.42 2.31 16 39 H 0.08 0.70 7.73 -51.93 -0.40 0.29 16 40 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.08 0.41 7.85 -51.93 -0.41 0.00 16 42 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 43 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 46 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 371.75 15.07 5.60 5.60 Total: -1.00 -35.37 371.75 -8.46 -43.83 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: -7.30 Total: 5.81 kcal Atomic # 6 Polarization: -1.10 SS G_CDS: -1.60 Total: -2.70 kcal Atomic # 7 Polarization: -48.76 SS G_CDS: 0.18 Total: -48.58 kcal Atomic # 8 Polarization: -20.80 SS G_CDS: -0.68 Total: -21.48 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -4.67 Total: 17.52 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -35.37 -8.46 -43.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884124340.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.930 kcal (2) G-P(sol) polarization free energy of solvation -35.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds