Wall clock time and date at job start Fri Apr 10 2020 17:48:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 120.00282 * 2 1 4 4 H 1.48503 * 109.47407 * 89.99943 * 3 2 1 5 5 H 1.48505 * 109.47281 * 209.99699 * 3 2 1 6 6 H 1.48501 * 109.47274 * 329.99797 * 3 2 1 7 7 C 1.37884 * 119.99707 * 180.27224 * 2 1 3 8 8 H 1.07999 * 120.00052 * 0.02562 * 7 2 1 9 9 C 1.50696 * 120.00126 * 180.02562 * 7 2 1 10 10 C 1.52993 * 109.47432 * 179.97438 * 9 7 2 11 11 C 1.53006 * 109.47481 * 179.97438 * 10 9 7 12 12 N 1.46497 * 109.47006 * 180.02562 * 11 10 9 13 13 C 1.34779 * 119.99802 * 179.97438 * 12 11 10 14 14 O 1.21595 * 119.99936 * 0.02562 * 13 12 11 15 15 N 1.34775 * 120.00115 * 179.97438 * 13 12 11 16 16 C 1.46497 * 119.99918 * 179.97438 * 15 13 12 17 17 H 1.09003 * 109.47237 * 35.01074 * 16 15 13 18 18 C 1.52998 * 109.47785 * 275.00407 * 16 15 13 19 19 O 1.42894 * 109.47211 * 295.00305 * 18 16 15 20 20 C 1.53001 * 109.46933 * 155.00332 * 16 15 13 21 21 C 1.53001 * 109.47306 * 295.00164 * 20 16 15 22 22 H 1.08995 * 109.82423 * 305.56860 * 21 20 16 23 23 C 1.54382 * 109.83073 * 184.58753 * 21 20 16 24 24 C 1.55310 * 102.25223 * 219.13164 * 23 21 20 25 25 C 1.54952 * 100.93980 * 34.13092 * 24 23 21 26 26 O 1.43243 * 109.82970 * 66.45109 * 21 20 16 27 27 H 0.97005 * 119.99656 * 359.72615 * 1 2 3 28 28 H 1.08996 * 109.47197 * 300.00354 * 9 7 2 29 29 H 1.09004 * 109.47476 * 59.99997 * 9 7 2 30 30 H 1.08996 * 109.47340 * 300.00415 * 10 9 7 31 31 H 1.09000 * 109.46925 * 60.00107 * 10 9 7 32 32 H 1.09001 * 109.46611 * 300.00296 * 11 10 9 33 33 H 1.09000 * 109.46866 * 60.00179 * 11 10 9 34 34 H 0.96996 * 120.00353 * 0.02562 * 12 11 10 35 35 H 0.96996 * 120.00041 * 0.02562 * 15 13 12 36 36 H 1.09003 * 109.47081 * 54.99923 * 18 16 15 37 37 H 1.09000 * 109.47555 * 175.00023 * 18 16 15 38 38 H 0.96699 * 114.00712 * 179.97438 * 19 18 16 39 39 H 1.08995 * 109.46975 * 55.00363 * 20 16 15 40 40 H 1.09006 * 109.47217 * 175.00451 * 20 16 15 41 41 H 1.08999 * 110.84713 * 337.31930 * 23 21 20 42 42 H 1.09001 * 110.84609 * 100.94261 * 23 21 20 43 43 H 1.08997 * 111.12445 * 276.21896 * 24 23 21 44 44 H 1.08994 * 111.16420 * 152.06845 * 24 23 21 45 45 H 1.08999 * 110.30665 * 204.63708 * 25 24 23 46 46 H 1.09004 * 110.39242 * 82.51671 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4400 -0.7000 6 1 1.4467 2.6526 -0.7001 7 6 2.0045 -1.1941 -0.0057 8 1 1.4645 -2.1294 -0.0105 9 6 3.5115 -1.1942 -0.0051 10 6 4.0214 -2.6367 -0.0114 11 6 5.5515 -2.6368 -0.0115 12 7 6.0397 -4.0180 -0.0182 13 6 7.3647 -4.2644 -0.0199 14 8 8.1549 -3.3402 -0.0155 15 7 7.8139 -5.5351 -0.0255 16 6 9.2542 -5.8028 -0.0280 17 1 9.7659 -5.0441 0.5642 18 6 9.7774 -5.7665 -1.4653 19 8 9.1929 -6.8353 -2.2121 20 6 9.5172 -7.1839 0.5757 21 6 9.1083 -7.1823 2.0500 22 1 9.6142 -6.3709 2.5731 23 6 9.4763 -8.5349 2.6970 24 6 8.2591 -8.7984 3.6250 25 6 7.1120 -8.1769 2.7890 26 8 7.6892 -7.0214 2.1605 27 1 -0.4850 0.8401 0.0040 28 1 3.8752 -0.6760 -0.8923 29 1 3.8746 -0.6849 0.8876 30 1 3.6577 -3.1546 0.8760 31 1 3.6584 -3.1464 -0.9039 32 1 5.9147 -2.1190 -0.8992 33 1 5.9148 -2.1269 0.8808 34 1 5.4093 -4.7552 -0.0221 35 1 7.1836 -6.2723 -0.0287 36 1 9.5116 -4.8144 -1.9248 37 1 10.8617 -5.8772 -1.4602 38 1 9.4799 -6.8735 -3.1348 39 1 8.9352 -7.9322 0.0379 40 1 10.5781 -7.4205 0.4931 41 1 9.5639 -9.3154 1.9411 42 1 10.3952 -8.4502 3.2771 43 1 8.3736 -8.2833 4.5787 44 1 8.1022 -9.8665 3.7744 45 1 6.2875 -7.8823 3.4382 46 1 6.7651 -8.8839 2.0353 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000884124340.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:48:11 Heat of formation + Delta-G solvation = -173.706060 kcal Electronic energy + Delta-G solvation = -24915.723097 eV Core-core repulsion = 21224.529757 eV Total energy + Delta-G solvation = -3691.193340 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 300.188 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.20920 -40.26517 -38.28696 -36.93913 -35.69039 -35.10359 -33.53644 -33.05522 -32.22962 -29.90088 -28.54835 -26.50166 -24.74788 -23.08752 -22.26656 -22.16896 -21.74689 -21.41778 -19.29308 -18.84414 -18.31482 -17.86503 -17.16249 -16.95436 -16.69552 -16.36356 -15.90504 -15.69685 -15.35022 -15.12046 -14.89141 -14.75921 -14.48193 -14.24784 -14.07026 -13.79342 -13.61410 -13.10770 -12.93527 -12.71910 -12.68049 -12.56607 -12.35358 -11.99761 -11.90067 -11.76912 -11.67680 -11.59835 -11.57040 -11.32479 -11.22180 -10.86604 -10.75694 -10.41712 -10.21800 -9.61172 -8.29047 -6.32810 1.37430 1.38833 1.51350 1.83671 2.26093 2.37142 2.96456 3.06626 3.39801 3.46825 3.62239 3.65427 4.01996 4.08737 4.13079 4.20905 4.23485 4.27454 4.44385 4.46747 4.52805 4.56211 4.63567 4.81413 4.87045 4.90300 4.91474 4.94069 4.94502 4.98128 5.04687 5.07062 5.21589 5.36566 5.44104 5.56900 5.57768 5.65534 5.72228 6.12316 6.22959 6.28315 6.74839 6.88771 7.20638 7.31914 7.69141 8.87510 Molecular weight = 300.19amu Principal moments of inertia in cm(-1) A = 0.018550 B = 0.002806 C = 0.002571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.091815 B = 9977.299473 C =10886.416656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.005 3.995 3 Si 0.948 3.052 4 H -0.267 1.267 5 H -0.248 1.248 6 H -0.283 1.283 7 C -0.531 4.531 8 H 0.037 0.963 9 C -0.011 4.011 10 C -0.098 4.098 11 C 0.149 3.851 12 N -0.736 5.736 13 C 0.699 3.301 14 O -0.645 6.645 15 N -0.707 5.707 16 C 0.165 3.835 17 H 0.079 0.921 18 C 0.067 3.933 19 O -0.578 6.578 20 C -0.118 4.118 21 C 0.073 3.927 22 H 0.067 0.933 23 C -0.143 4.143 24 C -0.153 4.153 25 C 0.040 3.960 26 O -0.394 6.394 27 H 0.266 0.734 28 H 0.021 0.979 29 H 0.019 0.981 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.052 0.948 33 H 0.052 0.948 34 H 0.407 0.593 35 H 0.407 0.593 36 H 0.025 0.975 37 H 0.077 0.923 38 H 0.393 0.607 39 H 0.081 0.919 40 H 0.109 0.891 41 H 0.089 0.911 42 H 0.093 0.907 43 H 0.073 0.927 44 H 0.097 0.903 45 H 0.079 0.921 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.104 -22.540 2.377 33.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.192 4.192 3 Si 0.771 3.229 4 H -0.192 1.192 5 H -0.172 1.172 6 H -0.209 1.209 7 C -0.569 4.569 8 H 0.055 0.945 9 C -0.049 4.049 10 C -0.136 4.136 11 C 0.025 3.975 12 N -0.391 5.391 13 C 0.399 3.601 14 O -0.528 6.528 15 N -0.362 5.362 16 C 0.059 3.941 17 H 0.097 0.903 18 C -0.012 4.012 19 O -0.385 6.385 20 C -0.156 4.156 21 C 0.016 3.984 22 H 0.085 0.915 23 C -0.181 4.181 24 C -0.191 4.191 25 C -0.037 4.037 26 O -0.314 6.314 27 H 0.075 0.925 28 H 0.040 0.960 29 H 0.038 0.962 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.242 0.758 35 H 0.243 0.757 36 H 0.044 0.956 37 H 0.096 0.904 38 H 0.242 0.758 39 H 0.099 0.901 40 H 0.128 0.872 41 H 0.108 0.892 42 H 0.111 0.889 43 H 0.091 0.909 44 H 0.116 0.884 45 H 0.097 0.903 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 25.278 -21.551 2.878 33.342 hybrid contribution -0.594 0.403 -0.437 0.840 sum 24.684 -21.148 2.441 32.596 Atomic orbital electron populations 1.70062 1.08213 1.28144 1.52739 1.25986 0.95607 1.03444 0.94176 0.85687 0.79509 0.78435 0.79222 1.19204 1.17170 1.20901 1.21462 0.91857 0.93285 1.50252 0.94481 1.19453 0.94091 0.94530 0.96803 1.21463 0.92030 0.98154 1.01967 1.21091 0.93954 0.81645 1.00847 1.45038 1.05276 1.09238 1.79511 1.16158 0.82546 0.83933 0.77432 1.90845 1.56051 1.44979 1.60911 1.44846 1.08203 1.04898 1.78233 1.20965 0.80251 0.98266 0.94602 0.90251 1.22579 0.97388 0.89080 0.92131 1.86407 1.72538 1.51555 1.28037 1.22133 1.03711 0.95270 0.94475 1.22874 0.81863 0.98073 0.95600 0.91544 1.23158 0.99443 0.96167 0.99293 1.23245 0.94250 1.02750 0.98816 1.23517 0.96713 0.87717 0.95708 1.88495 1.20427 1.41162 1.81304 0.92482 0.96049 0.96226 0.91942 0.91875 0.92917 0.92986 0.75773 0.75716 0.95635 0.90449 0.75753 0.90051 0.87240 0.89199 0.88888 0.90872 0.88415 0.90304 0.91507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.39 13.96 21.45 0.30 -60.09 16 2 C 0.00 0.28 5.47 84.66 0.46 0.74 16 3 Si 0.95 45.38 27.47 68.60 1.88 47.27 16 4 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 5 H -0.25 -11.16 6.53 99.48 0.65 -10.51 16 6 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 7 C -0.53 -30.96 9.66 25.60 0.25 -30.71 16 8 H 0.04 2.35 7.99 -2.91 -0.02 2.32 16 9 C -0.01 -0.51 4.04 29.84 0.12 -0.39 16 10 C -0.10 -3.81 5.27 30.59 0.16 -3.65 16 11 C 0.15 5.29 5.67 86.38 0.49 5.78 16 12 N -0.74 -22.47 5.56 -478.52 -2.66 -25.13 16 13 C 0.70 22.51 8.53 179.05 1.53 24.03 16 14 O -0.64 -25.75 16.01 -4.01 -0.06 -25.82 16 15 N -0.71 -17.03 3.88 -457.81 -1.78 -18.80 16 16 C 0.16 3.27 2.37 44.99 0.11 3.38 16 17 H 0.08 1.87 7.58 -2.39 -0.02 1.85 16 18 C 0.07 1.18 6.85 71.98 0.49 1.67 16 19 O -0.58 -9.03 12.83 -148.98 -1.91 -10.94 16 20 C -0.12 -1.57 4.13 30.60 0.13 -1.45 16 21 C 0.07 1.08 3.52 31.06 0.11 1.19 16 22 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 23 C -0.14 -1.30 6.54 31.86 0.21 -1.10 16 24 C -0.15 -1.53 7.16 32.06 0.23 -1.30 16 25 C 0.04 0.56 7.78 72.65 0.56 1.13 16 26 O -0.39 -7.65 8.92 -148.98 -1.33 -8.98 16 27 H 0.27 15.76 8.31 -92.70 -0.77 14.99 16 28 H 0.02 1.01 7.19 -2.39 -0.02 0.99 16 29 H 0.02 0.91 7.58 -2.39 -0.02 0.89 16 30 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 31 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 32 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.41 10.37 8.49 -92.71 -0.79 9.58 16 35 H 0.41 8.77 7.73 -92.71 -0.72 8.06 16 36 H 0.03 0.59 8.14 -2.39 -0.02 0.57 16 37 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.39 3.08 9.12 -74.06 -0.68 2.41 16 39 H 0.08 1.16 7.73 -2.39 -0.02 1.14 16 40 H 0.11 0.94 8.14 -2.38 -0.02 0.92 16 41 H 0.09 0.64 7.85 -2.39 -0.02 0.62 16 42 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 43 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 44 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 45 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 46 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 Total: -1.00 -76.95 371.75 -1.96 -78.91 By element: Atomic # 1 Polarization: 25.51 SS G_CDS: -1.25 Total: 24.25 kcal Atomic # 6 Polarization: -5.53 SS G_CDS: 4.85 Total: -0.68 kcal Atomic # 7 Polarization: -99.88 SS G_CDS: -4.14 Total: -104.02 kcal Atomic # 8 Polarization: -42.44 SS G_CDS: -3.30 Total: -45.74 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 1.88 Total: 47.27 kcal Total: -76.95 -1.96 -78.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884124340.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.793 kcal (2) G-P(sol) polarization free energy of solvation -76.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds