Wall clock time and date at job start Fri Apr 10 2020 17:48:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86807 * 119.99776 * 2 1 4 4 H 1.48501 * 109.47132 * 239.99838 * 3 2 1 5 5 H 1.48499 * 109.47251 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46973 * 120.00260 * 3 2 1 7 7 C 1.37877 * 120.00412 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00100 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99598 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.46637 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46761 * 180.02562 * 10 9 7 12 12 N 1.46498 * 109.47160 * 179.97438 * 11 10 9 13 13 C 1.34780 * 120.00069 * 179.97438 * 12 11 10 14 14 O 1.21587 * 119.99884 * 0.02562 * 13 12 11 15 15 N 1.34776 * 120.00051 * 180.02562 * 13 12 11 16 16 C 1.46501 * 120.00091 * 180.02562 * 15 13 12 17 17 H 1.08997 * 109.46660 * 324.99987 * 16 15 13 18 18 C 1.52996 * 109.47003 * 84.99987 * 16 15 13 19 19 O 1.42903 * 109.47138 * 65.00207 * 18 16 15 20 20 C 1.52998 * 109.46878 * 205.00166 * 16 15 13 21 21 C 1.52994 * 109.47507 * 64.99917 * 20 16 15 22 22 H 1.09005 * 110.55244 * 56.42280 * 21 20 16 23 23 C 1.54994 * 110.62185 * 179.47263 * 21 20 16 24 24 C 1.54807 * 102.09494 * 155.52387 * 23 21 20 25 25 C 1.54106 * 104.18688 * 339.12124 * 24 23 21 26 26 O 1.43739 * 107.29313 * 357.97161 * 25 24 23 27 27 H 0.97003 * 120.00043 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.46634 * 60.00204 * 9 7 2 29 29 H 1.08992 * 109.46934 * 300.00081 * 9 7 2 30 30 H 1.08998 * 109.47206 * 59.99971 * 10 9 7 31 31 H 1.08993 * 109.47068 * 299.99885 * 10 9 7 32 32 H 1.08998 * 109.47309 * 60.00004 * 11 10 9 33 33 H 1.09002 * 109.47342 * 299.99976 * 11 10 9 34 34 H 0.97000 * 120.00007 * 0.02562 * 12 11 10 35 35 H 0.97003 * 119.99633 * 359.97438 * 15 13 12 36 36 H 1.09006 * 109.47202 * 185.00028 * 18 16 15 37 37 H 1.08998 * 109.47344 * 305.00104 * 18 16 15 38 38 H 0.96700 * 113.99870 * 179.97438 * 19 18 16 39 39 H 1.08999 * 109.47333 * 304.99437 * 20 16 15 40 40 H 1.09001 * 109.46712 * 185.00365 * 20 16 15 41 41 H 1.09005 * 110.90701 * 37.32905 * 23 21 20 42 42 H 1.09000 * 110.91134 * 273.72820 * 23 21 20 43 43 H 1.08997 * 110.48888 * 220.44580 * 24 23 21 44 44 H 1.09000 * 110.48626 * 97.79808 * 24 23 21 45 45 H 1.09004 * 109.87710 * 117.39475 * 25 24 23 46 46 H 1.08997 * 109.87906 * 238.39454 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2455 -3.6620 -0.0018 11 6 1.4805 -4.9870 -0.0025 12 7 2.4325 -6.1005 -0.0043 13 6 1.9833 -7.3712 -0.0047 14 8 0.7879 -7.5934 -0.0039 15 7 2.8591 -8.3956 -0.0058 16 6 2.3708 -9.7769 -0.0068 17 1 1.4563 -9.8392 0.5830 18 6 2.0818 -10.2146 -1.4440 19 8 3.3019 -10.2445 -2.1874 20 6 3.4337 -10.6939 0.6017 21 6 3.6328 -10.3360 2.0758 22 1 2.6879 -10.3979 2.6157 23 6 4.6965 -11.2592 2.7229 24 6 5.2049 -10.3926 3.9006 25 6 4.8215 -8.9537 3.5038 26 8 4.2071 -9.0177 2.2059 27 1 -0.4850 0.8401 0.0004 28 1 0.6242 -2.5566 -0.8903 29 1 0.6249 -2.5570 0.8896 30 1 2.8728 -3.6046 0.8877 31 1 2.8714 -3.6038 -0.8922 32 1 0.8535 -5.0442 -0.8922 33 1 0.8542 -5.0455 0.8877 34 1 3.3862 -5.9233 -0.0046 35 1 3.8128 -8.2183 -0.0068 36 1 1.6354 -11.2091 -1.4381 37 1 1.3915 -9.5093 -1.9068 38 1 3.1940 -10.5146 -3.1096 39 1 4.3744 -10.5652 0.0663 40 1 3.1084 -11.7310 0.5203 41 1 5.5030 -11.4744 2.0218 42 1 4.2423 -12.1811 3.0860 43 1 6.2861 -10.4848 4.0032 44 1 4.7070 -10.6783 4.8272 45 1 4.1165 -8.5449 4.2278 46 1 5.7144 -8.3300 3.4633 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000884124341.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:48:14 Heat of formation + Delta-G solvation = -149.464542 kcal Electronic energy + Delta-G solvation = -24832.617881 eV Core-core repulsion = 21142.475732 eV Total energy + Delta-G solvation = -3690.142149 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 300.188 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.13641 -39.33557 -37.42496 -35.40485 -34.65961 -33.22240 -32.51041 -31.84638 -30.79107 -28.93422 -26.41498 -25.84212 -23.21971 -22.29015 -21.46746 -21.05268 -20.58131 -20.16799 -18.03029 -17.42765 -17.03072 -16.42305 -16.15906 -15.77424 -15.41272 -15.32971 -14.76767 -14.46609 -14.31472 -13.93958 -13.85539 -13.66238 -13.42649 -13.01876 -12.59181 -12.23981 -12.16609 -12.00675 -11.73227 -11.71479 -11.57769 -11.38862 -11.01096 -10.91195 -10.82945 -10.63106 -10.56619 -10.20248 -9.88794 -9.85213 -9.76907 -9.35269 -9.07363 -8.93678 -8.38111 -8.31866 -5.96804 -3.99620 3.03304 3.35444 3.39807 3.42135 3.58161 3.60141 4.13825 4.17985 4.28596 4.47345 4.56295 4.61360 4.72706 4.85841 4.89365 5.07945 5.16174 5.20672 5.32414 5.38709 5.39210 5.43564 5.50209 5.57588 5.64269 5.67813 5.74682 5.84178 5.93110 5.97539 6.30007 6.67691 6.70635 6.73380 6.75113 6.97450 7.13785 7.34525 7.42305 7.69971 7.84060 8.02806 8.41194 8.44284 8.99189 9.07099 9.64097 11.14525 Molecular weight = 300.19amu Principal moments of inertia in cm(-1) A = 0.017721 B = 0.002712 C = 0.002462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.626330 B =10321.763399 C =11368.258169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.522 4.522 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.120 4.120 11 C 0.137 3.863 12 N -0.741 5.741 13 C 0.703 3.297 14 O -0.606 6.606 15 N -0.725 5.725 16 C 0.172 3.828 17 H 0.097 0.903 18 C 0.060 3.940 19 O -0.569 6.569 20 C -0.116 4.116 21 C 0.076 3.924 22 H 0.069 0.931 23 C -0.150 4.150 24 C -0.156 4.156 25 C 0.046 3.954 26 O -0.364 6.364 27 H 0.261 0.739 28 H 0.019 0.981 29 H 0.019 0.981 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.393 0.607 35 H 0.400 0.600 36 H 0.050 0.950 37 H 0.055 0.945 38 H 0.376 0.624 39 H 0.086 0.914 40 H 0.089 0.911 41 H 0.078 0.922 42 H 0.078 0.922 43 H 0.075 0.925 44 H 0.073 0.927 45 H 0.057 0.943 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.631 -27.454 2.980 29.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.560 4.560 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.158 4.158 11 C 0.014 3.986 12 N -0.395 5.395 13 C 0.403 3.597 14 O -0.485 6.485 15 N -0.381 5.381 16 C 0.066 3.934 17 H 0.115 0.885 18 C -0.019 4.019 19 O -0.374 6.374 20 C -0.154 4.154 21 C 0.019 3.981 22 H 0.087 0.913 23 C -0.188 4.188 24 C -0.194 4.194 25 C -0.031 4.031 26 O -0.283 6.283 27 H 0.071 0.929 28 H 0.037 0.963 29 H 0.037 0.963 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.227 0.773 35 H 0.235 0.765 36 H 0.068 0.932 37 H 0.073 0.927 38 H 0.222 0.778 39 H 0.105 0.895 40 H 0.107 0.893 41 H 0.096 0.904 42 H 0.096 0.904 43 H 0.094 0.906 44 H 0.091 0.909 45 H 0.075 0.925 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 9.587 -27.147 3.415 28.992 hybrid contribution 1.051 0.787 -0.269 1.340 sum 10.639 -26.361 3.145 28.600 Atomic orbital electron populations 1.69961 1.06047 1.26725 1.50640 1.25030 0.94850 0.99249 0.95347 0.86647 0.79553 0.83142 0.78569 1.20263 1.21302 1.20268 1.21189 0.92967 0.91004 1.50832 0.92711 1.19020 0.93864 0.90816 0.97618 1.21878 0.99737 0.93415 1.00773 1.21443 0.91318 0.84287 1.01593 1.45320 1.10321 1.04469 1.79410 1.16006 0.85219 0.80876 0.77583 1.90878 1.14345 1.84306 1.59015 1.44907 1.09225 1.03985 1.79937 1.20744 0.97942 0.80965 0.93754 0.88550 1.22731 0.86540 0.99523 0.93085 1.86459 1.32088 1.92076 1.26761 1.21858 1.00828 0.99192 0.93519 1.23172 0.96047 0.82635 0.96270 0.91306 1.23169 0.99217 0.98790 0.97605 1.22932 1.02106 0.95429 0.98953 1.23119 0.97760 0.96491 0.85756 1.88918 1.73572 1.32079 1.33714 0.92915 0.96299 0.96287 0.92821 0.92845 0.92221 0.92191 0.77346 0.76470 0.93195 0.92699 0.77762 0.89527 0.89285 0.90362 0.90377 0.90615 0.90857 0.92503 0.89909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.33 13.29 55.43 0.74 -26.60 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.52 -14.92 9.11 -34.44 -0.31 -15.23 16 8 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.02 0.64 4.97 -27.88 -0.14 0.50 16 10 C -0.12 -2.48 5.27 -26.73 -0.14 -2.62 16 11 C 0.14 2.63 5.67 -4.04 -0.02 2.60 16 12 N -0.74 -12.06 5.56 -65.23 -0.36 -12.42 16 13 C 0.70 11.79 8.53 -86.92 -0.74 11.05 16 14 O -0.61 -12.40 16.01 5.29 0.08 -12.32 16 15 N -0.72 -9.26 3.89 -58.68 -0.23 -9.49 16 16 C 0.17 1.84 2.37 -67.93 -0.16 1.68 16 17 H 0.10 1.16 7.58 -51.93 -0.39 0.77 16 18 C 0.06 0.59 6.85 37.16 0.25 0.84 16 19 O -0.57 -5.15 12.83 -35.23 -0.45 -5.61 16 20 C -0.12 -0.92 4.32 -26.74 -0.12 -1.04 16 21 C 0.08 0.64 3.32 -25.68 -0.09 0.56 16 22 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 23 C -0.15 -0.95 6.59 -24.73 -0.16 -1.11 16 24 C -0.16 -1.00 7.01 -25.20 -0.18 -1.18 16 25 C 0.05 0.39 7.70 37.74 0.29 0.68 16 26 O -0.36 -3.83 9.20 -35.23 -0.32 -4.15 16 27 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 28 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 32 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.39 5.44 8.49 -40.82 -0.35 5.09 16 35 H 0.40 4.72 7.77 -40.82 -0.32 4.40 16 36 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 37 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.38 1.95 9.12 45.56 0.42 2.37 16 39 H 0.09 0.75 7.73 -51.93 -0.40 0.35 16 40 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.08 0.48 8.06 -51.93 -0.42 0.06 16 42 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 LS Contribution 375.72 15.07 5.66 5.66 Total: -1.00 -34.84 375.72 -8.86 -43.70 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: -7.34 Total: 6.11 kcal Atomic # 6 Polarization: -0.11 SS G_CDS: -1.61 Total: -1.72 kcal Atomic # 7 Polarization: -48.65 SS G_CDS: 0.15 Total: -48.51 kcal Atomic # 8 Polarization: -21.39 SS G_CDS: -0.69 Total: -22.08 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.84 -8.86 -43.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884124341.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.765 kcal (2) G-P(sol) polarization free energy of solvation -34.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds