Wall clock time and date at job start Fri Apr 10 2020 17:48:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86807 * 119.99776 * 2 1 4 4 H 1.48501 * 109.47132 * 239.99838 * 3 2 1 5 5 H 1.48499 * 109.47251 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46973 * 120.00260 * 3 2 1 7 7 C 1.37877 * 120.00412 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00100 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99598 * 359.97438 * 7 2 1 10 10 C 1.53003 * 109.46637 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46761 * 180.02562 * 10 9 7 12 12 N 1.46498 * 109.47160 * 179.97438 * 11 10 9 13 13 C 1.34780 * 120.00069 * 179.97438 * 12 11 10 14 14 O 1.21587 * 119.99884 * 0.02562 * 13 12 11 15 15 N 1.34776 * 120.00051 * 180.02562 * 13 12 11 16 16 C 1.46501 * 120.00091 * 180.02562 * 15 13 12 17 17 H 1.08997 * 109.46660 * 324.99987 * 16 15 13 18 18 C 1.52996 * 109.47003 * 84.99987 * 16 15 13 19 19 O 1.42903 * 109.47138 * 65.00207 * 18 16 15 20 20 C 1.52998 * 109.46878 * 205.00166 * 16 15 13 21 21 C 1.52994 * 109.47507 * 64.99917 * 20 16 15 22 22 H 1.09005 * 110.55244 * 56.42280 * 21 20 16 23 23 C 1.54994 * 110.62185 * 179.47263 * 21 20 16 24 24 C 1.54807 * 102.09494 * 155.52387 * 23 21 20 25 25 C 1.54106 * 104.18688 * 339.12124 * 24 23 21 26 26 O 1.43739 * 107.29313 * 357.97161 * 25 24 23 27 27 H 0.97003 * 120.00043 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.46634 * 60.00204 * 9 7 2 29 29 H 1.08992 * 109.46934 * 300.00081 * 9 7 2 30 30 H 1.08998 * 109.47206 * 59.99971 * 10 9 7 31 31 H 1.08993 * 109.47068 * 299.99885 * 10 9 7 32 32 H 1.08998 * 109.47309 * 60.00004 * 11 10 9 33 33 H 1.09002 * 109.47342 * 299.99976 * 11 10 9 34 34 H 0.97000 * 120.00007 * 0.02562 * 12 11 10 35 35 H 0.97003 * 119.99633 * 359.97438 * 15 13 12 36 36 H 1.09006 * 109.47202 * 185.00028 * 18 16 15 37 37 H 1.08998 * 109.47344 * 305.00104 * 18 16 15 38 38 H 0.96700 * 113.99870 * 179.97438 * 19 18 16 39 39 H 1.08999 * 109.47333 * 304.99437 * 20 16 15 40 40 H 1.09001 * 109.46712 * 185.00365 * 20 16 15 41 41 H 1.09005 * 110.90701 * 37.32905 * 23 21 20 42 42 H 1.09000 * 110.91134 * 273.72820 * 23 21 20 43 43 H 1.08997 * 110.48888 * 220.44580 * 24 23 21 44 44 H 1.09000 * 110.48626 * 97.79808 * 24 23 21 45 45 H 1.09004 * 109.87710 * 117.39475 * 25 24 23 46 46 H 1.08997 * 109.87906 * 238.39454 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2455 -3.6620 -0.0018 11 6 1.4805 -4.9870 -0.0025 12 7 2.4325 -6.1005 -0.0043 13 6 1.9833 -7.3712 -0.0047 14 8 0.7879 -7.5934 -0.0039 15 7 2.8591 -8.3956 -0.0058 16 6 2.3708 -9.7769 -0.0068 17 1 1.4563 -9.8392 0.5830 18 6 2.0818 -10.2146 -1.4440 19 8 3.3019 -10.2445 -2.1874 20 6 3.4337 -10.6939 0.6017 21 6 3.6328 -10.3360 2.0758 22 1 2.6879 -10.3979 2.6157 23 6 4.6965 -11.2592 2.7229 24 6 5.2049 -10.3926 3.9006 25 6 4.8215 -8.9537 3.5038 26 8 4.2071 -9.0177 2.2059 27 1 -0.4850 0.8401 0.0004 28 1 0.6242 -2.5566 -0.8903 29 1 0.6249 -2.5570 0.8896 30 1 2.8728 -3.6046 0.8877 31 1 2.8714 -3.6038 -0.8922 32 1 0.8535 -5.0442 -0.8922 33 1 0.8542 -5.0455 0.8877 34 1 3.3862 -5.9233 -0.0046 35 1 3.8128 -8.2183 -0.0068 36 1 1.6354 -11.2091 -1.4381 37 1 1.3915 -9.5093 -1.9068 38 1 3.1940 -10.5146 -3.1096 39 1 4.3744 -10.5652 0.0663 40 1 3.1084 -11.7310 0.5203 41 1 5.5030 -11.4744 2.0218 42 1 4.2423 -12.1811 3.0860 43 1 6.2861 -10.4848 4.0032 44 1 4.7070 -10.6783 4.8272 45 1 4.1165 -8.5449 4.2278 46 1 5.7144 -8.3300 3.4633 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000884124341.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:48:13 Heat of formation + Delta-G solvation = -176.480879 kcal Electronic energy + Delta-G solvation = -24833.789397 eV Core-core repulsion = 21142.475732 eV Total energy + Delta-G solvation = -3691.313665 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 300.188 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.19476 -40.22407 -38.30609 -36.91462 -35.72358 -35.15079 -33.43613 -32.95241 -32.15424 -29.83741 -28.27278 -26.49566 -25.02985 -23.14397 -22.27454 -22.06135 -21.97883 -21.45372 -19.23836 -18.51624 -18.29873 -17.72467 -17.08554 -16.82512 -16.61373 -16.45065 -16.08988 -15.89294 -15.55044 -15.24893 -14.89295 -14.59415 -14.27348 -14.24262 -13.75573 -13.71046 -13.49909 -13.22530 -12.87514 -12.70734 -12.56195 -12.54363 -12.38989 -12.36090 -12.05297 -11.67003 -11.60762 -11.60238 -11.51029 -11.28763 -11.13571 -10.86032 -10.54549 -10.54347 -10.25967 -9.63596 -8.18761 -6.30577 1.41551 1.45172 1.52966 1.81811 2.24586 2.42638 2.97067 3.14574 3.39102 3.46881 3.55100 3.73928 4.06600 4.07431 4.13616 4.18750 4.24033 4.25339 4.44771 4.47329 4.57037 4.57484 4.60038 4.80246 4.83995 4.91893 4.92705 4.96592 4.98484 5.01128 5.10467 5.16753 5.22798 5.30394 5.49003 5.58208 5.70028 5.71444 5.84487 6.03637 6.15147 6.23752 6.86242 6.89914 7.20521 7.38806 7.68236 8.93341 Molecular weight = 300.19amu Principal moments of inertia in cm(-1) A = 0.017721 B = 0.002712 C = 0.002462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.626330 B =10321.763399 C =11368.258169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.003 4.003 3 Si 0.969 3.031 4 H -0.265 1.265 5 H -0.285 1.285 6 H -0.265 1.265 7 C -0.543 4.543 8 H 0.066 0.934 9 C 0.025 3.975 10 C -0.100 4.100 11 C 0.152 3.848 12 N -0.733 5.733 13 C 0.699 3.301 14 O -0.646 6.646 15 N -0.707 5.707 16 C 0.163 3.837 17 H 0.079 0.921 18 C 0.068 3.932 19 O -0.577 6.577 20 C -0.102 4.102 21 C 0.069 3.931 22 H 0.059 0.941 23 C -0.142 4.142 24 C -0.152 4.152 25 C 0.038 3.962 26 O -0.389 6.389 27 H 0.264 0.736 28 H -0.008 1.008 29 H -0.008 1.008 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.045 0.955 33 H 0.043 0.957 34 H 0.408 0.592 35 H 0.408 0.592 36 H 0.080 0.920 37 H 0.024 0.976 38 H 0.394 0.606 39 H 0.085 0.915 40 H 0.117 0.883 41 H 0.084 0.916 42 H 0.095 0.905 43 H 0.087 0.913 44 H 0.079 0.921 45 H 0.046 0.954 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.177 -28.708 2.992 31.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.201 4.201 3 Si 0.793 3.207 4 H -0.190 1.190 5 H -0.210 1.210 6 H -0.190 1.190 7 C -0.581 4.581 8 H 0.084 0.916 9 C -0.012 4.012 10 C -0.138 4.138 11 C 0.028 3.972 12 N -0.388 5.388 13 C 0.399 3.601 14 O -0.529 6.529 15 N -0.362 5.362 16 C 0.057 3.943 17 H 0.098 0.902 18 C -0.011 4.011 19 O -0.385 6.385 20 C -0.140 4.140 21 C 0.011 3.989 22 H 0.077 0.923 23 C -0.180 4.180 24 C -0.190 4.190 25 C -0.039 4.039 26 O -0.309 6.309 27 H 0.072 0.928 28 H 0.011 0.989 29 H 0.010 0.990 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.244 0.756 35 H 0.244 0.756 36 H 0.098 0.902 37 H 0.043 0.957 38 H 0.243 0.757 39 H 0.104 0.896 40 H 0.135 0.865 41 H 0.102 0.898 42 H 0.113 0.887 43 H 0.105 0.895 44 H 0.098 0.902 45 H 0.064 0.936 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 12.198 -28.449 3.414 31.141 hybrid contribution 0.234 1.118 -0.282 1.177 sum 12.432 -27.331 3.132 30.188 Atomic orbital electron populations 1.70113 1.07968 1.27888 1.51606 1.26041 0.95765 1.03587 0.94713 0.85450 0.78184 0.77817 0.79282 1.18998 1.21047 1.19011 1.21655 0.93737 0.92028 1.50645 0.91583 1.18925 0.94380 0.92880 0.95044 1.21580 0.98436 0.91820 1.01919 1.21024 0.91314 0.84730 1.00169 1.45027 1.10562 1.03803 1.79450 1.16175 0.85085 0.81417 0.77441 1.90849 1.16298 1.84889 1.60875 1.44852 1.08982 1.04079 1.78309 1.20993 0.98345 0.80163 0.94778 0.90249 1.22567 0.86317 1.00220 0.92043 1.86410 1.31571 1.92278 1.28223 1.21810 0.99582 0.99772 0.92817 1.23297 0.96349 0.82558 0.96658 0.92280 1.23141 0.98621 0.98825 0.97375 1.22923 1.02922 0.93841 0.99289 1.23229 0.97548 0.98165 0.84963 1.88879 1.73918 1.33468 1.34597 0.92772 0.98940 0.98984 0.91601 0.91518 0.93677 0.93809 0.75635 0.75602 0.90237 0.95726 0.75710 0.89647 0.86533 0.89755 0.88677 0.89454 0.90192 0.93591 0.89523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.28 13.29 21.45 0.28 -58.00 16 2 C 0.00 -0.20 5.46 84.65 0.46 0.26 16 3 Si 0.97 44.60 29.54 68.60 2.03 46.62 16 4 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 5 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 6 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 7 C -0.54 -31.15 9.11 25.60 0.23 -30.92 16 8 H 0.07 3.56 7.74 -2.91 -0.02 3.54 16 9 C 0.03 1.38 4.97 29.85 0.15 1.53 16 10 C -0.10 -4.12 5.27 30.59 0.16 -3.96 16 11 C 0.15 5.97 5.67 86.38 0.49 6.46 16 12 N -0.73 -23.78 5.56 -478.54 -2.66 -26.44 16 13 C 0.70 23.69 8.53 179.05 1.53 25.22 16 14 O -0.65 -27.30 16.01 -3.99 -0.06 -27.36 16 15 N -0.71 -17.77 3.89 -457.82 -1.78 -19.55 16 16 C 0.16 3.35 2.37 44.99 0.11 3.46 16 17 H 0.08 1.93 7.58 -2.39 -0.02 1.91 16 18 C 0.07 1.23 6.85 71.98 0.49 1.72 16 19 O -0.58 -9.29 12.83 -148.98 -1.91 -11.20 16 20 C -0.10 -1.41 4.32 30.59 0.13 -1.28 16 21 C 0.07 1.05 3.32 31.27 0.10 1.16 16 22 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 23 C -0.14 -1.43 6.59 31.89 0.21 -1.22 16 24 C -0.15 -1.65 7.01 31.59 0.22 -1.43 16 25 C 0.04 0.61 7.70 72.36 0.56 1.17 16 26 O -0.39 -7.86 9.20 -148.98 -1.37 -9.23 16 27 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 28 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 29 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 30 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 31 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 32 H 0.04 1.89 8.14 -2.39 -0.02 1.88 16 33 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.41 10.81 8.49 -92.71 -0.79 10.03 16 35 H 0.41 9.17 7.77 -92.71 -0.72 8.45 16 36 H 0.08 0.98 8.14 -2.38 -0.02 0.96 16 37 H 0.02 0.60 8.14 -2.39 -0.02 0.58 16 38 H 0.39 3.25 9.12 -74.06 -0.68 2.57 16 39 H 0.08 1.26 7.73 -2.39 -0.02 1.24 16 40 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.08 0.78 8.06 -2.38 -0.02 0.76 16 42 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 43 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 44 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 45 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 46 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -76.56 375.72 -1.83 -78.39 By element: Atomic # 1 Polarization: 25.80 SS G_CDS: -1.20 Total: 24.60 kcal Atomic # 6 Polarization: -2.68 SS G_CDS: 4.85 Total: 2.17 kcal Atomic # 7 Polarization: -99.83 SS G_CDS: -4.16 Total: -103.99 kcal Atomic # 8 Polarization: -44.45 SS G_CDS: -3.34 Total: -47.79 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.62 kcal Total: -76.56 -1.83 -78.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884124341.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.090 kcal (2) G-P(sol) polarization free energy of solvation -76.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -174.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds