Wall clock time and date at job start Fri Apr 10 2020 17:48:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46898 * 111.00046 * 2 1 4 4 C 1.46900 * 111.00505 * 123.95752 * 2 1 3 5 5 C 1.47200 * 109.47612 * 169.99765 * 4 2 1 6 6 C 3.42795 * 156.18977 * 142.20073 * 2 1 3 7 7 C 4.81132 * 162.47276 * 151.69076 * 2 1 3 8 8 N 1.46507 * 109.47029 * 236.67904 * 7 6 5 9 9 C 1.34773 * 120.00266 * 180.02562 * 8 7 6 10 10 O 1.21282 * 119.99503 * 359.97438 * 9 8 7 11 11 C 1.50694 * 120.00092 * 180.02562 * 9 8 7 12 12 C 1.50707 * 109.47262 * 179.97438 * 11 9 8 13 13 C 1.37643 * 120.12639 * 265.30991 * 12 11 9 14 14 C 1.38615 * 120.24281 * 180.31829 * 13 12 11 15 15 C 1.38658 * 120.50051 * 359.66907 * 14 13 12 16 16 C 1.37593 * 120.25264 * 0.02562 * 15 14 13 17 17 C 1.40688 * 120.12508 * 84.99750 * 12 11 9 18 18 C 1.41401 * 120.24844 * 359.97438 * 17 12 11 19 19 H 1.07999 * 119.99289 * 334.28466 * 18 17 12 20 20 C 1.39937 * 120.00394 * 154.28925 * 18 17 12 21 21 N 1.30829 * 120.00181 * 334.60180 * 20 18 17 22 22 Si 1.86801 * 120.00083 * 154.60226 * 20 18 17 23 23 H 1.48505 * 109.47160 * 179.97438 * 22 20 18 24 24 H 1.48495 * 109.47100 * 300.00105 * 22 20 18 25 25 H 1.48502 * 109.47051 * 60.00179 * 22 20 18 26 26 H 1.09001 * 109.47163 * 296.04025 * 1 2 3 27 27 H 1.08994 * 109.47147 * 56.04550 * 1 2 3 28 28 H 1.09001 * 109.47222 * 176.04473 * 1 2 3 29 29 H 1.09002 * 109.47138 * 183.95761 * 3 2 1 30 30 H 1.09001 * 109.47087 * 303.95405 * 3 2 1 31 31 H 1.08997 * 109.46897 * 63.95699 * 3 2 1 32 32 H 1.09001 * 109.46824 * 49.99828 * 4 2 1 33 33 H 1.09003 * 109.46584 * 290.00202 * 4 2 1 34 34 H 1.09001 * 109.47112 * 116.68433 * 7 6 5 35 35 H 1.08991 * 109.47436 * 356.68221 * 7 6 5 36 36 H 0.97000 * 119.99705 * 0.02562 * 8 7 6 37 37 H 1.09001 * 109.46892 * 59.99768 * 11 9 8 38 38 H 1.08991 * 109.47294 * 299.99778 * 11 9 8 39 39 H 1.07998 * 119.87840 * 0.02562 * 13 12 11 40 40 H 1.07996 * 119.74749 * 179.68975 * 14 13 12 41 41 H 1.08000 * 119.87393 * 180.02562 * 15 14 13 42 42 H 1.07996 * 120.12941 * 180.02562 * 16 15 14 43 43 H 0.96998 * 119.99709 * 354.17607 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 3.4473 -0.9482 0.9765 6 6 4.6051 -1.0935 0.8482 7 6 6.0569 -1.2757 0.6871 8 7 6.7583 -0.5990 1.7810 9 6 8.1043 -0.6310 1.8404 10 8 8.7350 -1.2206 0.9885 11 6 8.8257 0.0645 2.9658 12 6 10.3121 -0.1218 2.8010 13 6 10.9563 -1.1482 3.4537 14 6 12.3244 -1.3179 3.3090 15 6 13.0581 -0.4621 2.5017 16 6 12.4341 0.5669 1.8347 17 6 11.0455 0.7487 1.9741 18 6 10.3933 1.8023 1.2930 19 1 9.3434 1.7218 1.0530 20 6 11.1082 2.9492 0.9298 21 7 12.1764 3.2943 1.6017 22 14 10.5373 3.9874 -0.5143 23 1 11.4587 5.1386 -0.6913 24 1 10.5347 3.1607 -1.7479 25 1 9.1644 4.4888 -0.2515 26 1 -0.3633 0.4511 0.9233 27 1 -0.3633 0.5740 -0.8524 28 1 -0.3634 -1.0252 -0.0709 29 1 3.0828 1.3432 -0.0709 30 1 1.5898 1.9163 -0.8524 31 1 1.7044 1.8723 0.9233 32 1 1.5090 -1.7407 1.1755 33 1 1.7976 -0.2248 2.0627 34 1 6.3730 -0.8502 -0.2653 35 1 6.2940 -2.3393 0.7065 36 1 6.2539 -0.1278 2.4625 37 1 8.5099 -0.3616 3.9181 38 1 8.5883 1.1281 2.9472 39 1 10.3945 -1.8210 4.0847 40 1 12.8224 -2.1229 3.8289 41 1 14.1235 -0.6039 2.3959 42 1 13.0075 1.2320 1.2061 43 1 12.4252 2.8053 2.4016 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000913520302.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:48:27 Heat of formation + Delta-G solvation = 28.888645 kcal Electronic energy + Delta-G solvation = -22869.397012 eV Core-core repulsion = 19494.297757 eV Total energy + Delta-G solvation = -3375.099255 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 300.158 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.30011 -37.97445 -37.53826 -35.11804 -33.81457 -32.78285 -31.76319 -29.19751 -29.02064 -27.93581 -27.10847 -25.52011 -24.67986 -22.43666 -20.90915 -20.68936 -19.61561 -17.87864 -17.43047 -16.26964 -15.91950 -15.88833 -15.69314 -15.27679 -14.83321 -14.34382 -14.25311 -14.09670 -13.75255 -13.34902 -13.14121 -12.99315 -12.87992 -12.55775 -12.28026 -12.23869 -12.00089 -11.98007 -11.71499 -11.20184 -11.13542 -10.81885 -10.48598 -10.42736 -10.36093 -10.16125 -9.61909 -9.34874 -9.21144 -8.92456 -8.81250 -8.75441 -7.52099 -7.47117 -7.08963 -4.38614 2.25868 2.42573 2.81375 2.89306 3.18177 3.28881 3.31828 3.40281 3.58688 3.91078 4.02854 4.05403 4.62785 4.74633 4.84473 4.99692 5.03094 5.22659 5.27389 5.31632 5.45082 5.49589 5.58875 5.65225 5.66279 5.76974 5.95502 6.09172 6.20816 6.35763 6.39710 6.51464 6.56977 6.65943 6.72350 7.03880 7.24648 7.40190 7.45729 7.70494 7.86140 7.87993 7.90946 7.99335 8.24650 8.38489 8.78818 8.82894 8.96347 10.10631 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.014503 B = 0.003241 C = 0.002741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1930.117799 B = 8637.390680 C =10211.889426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.547 5.547 3 C 0.021 3.979 4 C 0.168 3.832 5 C -0.165 4.165 6 C -0.174 4.174 7 C 0.234 3.766 8 N -0.744 5.744 9 C 0.516 3.484 10 O -0.518 6.518 11 C -0.068 4.068 12 C -0.186 4.186 13 C -0.068 4.068 14 C -0.254 4.254 15 C -0.086 4.086 16 C -0.216 4.216 17 C 0.116 3.884 18 C -0.517 4.517 19 H 0.072 0.928 20 C 0.040 3.960 21 N -0.799 5.799 22 Si 1.060 2.940 23 H -0.274 1.274 24 H -0.275 1.275 25 H -0.277 1.277 26 H 0.028 0.972 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.028 0.972 32 H 0.098 0.902 33 H 0.060 0.940 34 H 0.091 0.909 35 H 0.088 0.912 36 H 0.398 0.602 37 H 0.076 0.924 38 H 0.096 0.904 39 H 0.086 0.914 40 H 0.087 0.913 41 H 0.088 0.912 42 H 0.104 0.896 43 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.600 -2.899 0.711 19.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.271 5.271 3 C -0.127 4.127 4 C 0.042 3.958 5 C -0.166 4.166 6 C -0.176 4.176 7 C 0.111 3.889 8 N -0.399 5.399 9 C 0.304 3.696 10 O -0.392 6.392 11 C -0.108 4.108 12 C -0.188 4.188 13 C -0.087 4.087 14 C -0.273 4.273 15 C -0.104 4.104 16 C -0.235 4.235 17 C 0.113 3.887 18 C -0.545 4.545 19 H 0.090 0.910 20 C -0.181 4.181 21 N -0.422 5.422 22 Si 0.884 3.116 23 H -0.199 1.199 24 H -0.200 1.200 25 H -0.203 1.203 26 H 0.047 0.953 27 H 0.091 0.909 28 H 0.089 0.911 29 H 0.091 0.909 30 H 0.089 0.911 31 H 0.047 0.953 32 H 0.116 0.884 33 H 0.078 0.922 34 H 0.108 0.892 35 H 0.106 0.894 36 H 0.232 0.768 37 H 0.095 0.905 38 H 0.114 0.886 39 H 0.104 0.896 40 H 0.106 0.894 41 H 0.106 0.894 42 H 0.123 0.877 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -18.521 -2.209 -1.250 18.694 hybrid contribution -0.942 -0.847 1.929 2.308 sum -19.463 -3.056 0.679 19.713 Atomic orbital electron populations 1.22403 0.86463 1.02599 1.00910 1.61944 1.08110 1.14629 1.42409 1.22449 1.01578 0.87979 1.00648 1.18991 0.85306 0.99311 0.92225 1.21927 0.93152 1.01352 1.00200 1.22298 0.93585 1.00814 1.00873 1.18002 0.80274 0.98593 0.92010 1.46178 1.07096 1.57633 1.28972 1.21263 0.80594 0.80073 0.87679 1.90696 1.66056 1.42384 1.40048 1.20238 0.94267 1.01346 0.94955 1.19007 0.92123 1.02491 1.05147 1.20359 0.94226 0.95804 0.98280 1.20264 0.94177 1.03872 1.08967 1.20604 0.97316 0.95449 0.97076 1.21140 0.95568 1.01373 1.05433 1.17395 0.91416 0.91466 0.88388 1.20441 0.98860 1.01582 1.33589 0.90973 1.26924 0.93130 0.97249 1.00827 1.70452 1.21125 1.37230 1.13429 0.83717 0.76555 0.76077 0.75283 1.19886 1.19997 1.20268 0.95340 0.90914 0.91054 0.90880 0.91067 0.95306 0.88400 0.92174 0.89161 0.89450 0.76817 0.90527 0.88562 0.89586 0.89449 0.89387 0.87749 0.88730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.57 60.06 0.57 0.72 16 2 N -0.55 -4.88 5.00 -254.82 -1.27 -6.16 16 3 C 0.02 0.19 9.36 60.06 0.56 0.75 16 4 C 0.17 1.44 5.46 -6.61 -0.04 1.40 16 5 C -0.16 -1.89 12.44 -37.12 -0.46 -2.35 16 6 C -0.17 -2.20 13.46 -37.12 -0.50 -2.70 16 7 C 0.23 3.26 6.15 -6.83 -0.04 3.22 16 8 N -0.74 -11.16 5.54 -63.16 -0.35 -11.51 16 9 C 0.52 10.12 7.46 -10.99 -0.08 10.03 16 10 O -0.52 -12.47 16.03 5.56 0.09 -12.38 16 11 C -0.07 -1.34 5.18 -29.03 -0.15 -1.49 16 12 C -0.19 -4.48 4.43 -103.91 -0.46 -4.94 16 13 C -0.07 -1.58 9.66 -39.66 -0.38 -1.96 16 14 C -0.25 -5.89 10.05 -39.29 -0.39 -6.29 16 15 C -0.09 -2.08 10.02 -39.66 -0.40 -2.48 16 16 C -0.22 -5.73 7.95 -38.87 -0.31 -6.04 16 17 C 0.12 3.10 5.30 -106.82 -0.57 2.54 16 18 C -0.52 -13.68 8.08 -37.74 -0.30 -13.99 16 19 H 0.07 1.88 6.73 -52.49 -0.35 1.52 16 20 C 0.04 1.03 4.94 -17.34 -0.09 0.95 16 21 N -0.80 -21.29 12.31 55.55 0.68 -20.60 16 22 Si 1.06 22.13 30.00 -169.99 -5.10 17.03 16 23 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 24 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 25 H -0.28 -5.43 7.11 56.52 0.40 -5.03 16 26 H 0.03 0.15 8.14 -51.93 -0.42 -0.27 16 27 H 0.07 0.41 8.12 -51.93 -0.42 -0.02 16 28 H 0.07 0.37 8.12 -51.93 -0.42 -0.05 16 29 H 0.07 0.75 7.29 -51.93 -0.38 0.37 16 30 H 0.07 0.54 8.12 -51.93 -0.42 0.12 16 31 H 0.03 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.10 0.68 8.06 -51.93 -0.42 0.26 16 33 H 0.06 0.44 8.12 -51.93 -0.42 0.02 16 34 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 35 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.40 4.90 8.45 -40.82 -0.34 4.55 16 37 H 0.08 1.25 8.05 -51.93 -0.42 0.83 16 38 H 0.10 1.87 7.06 -51.93 -0.37 1.50 16 39 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 40 H 0.09 1.80 8.06 -52.49 -0.42 1.37 16 41 H 0.09 1.90 8.06 -52.49 -0.42 1.48 16 42 H 0.10 2.85 6.49 -52.49 -0.34 2.51 16 43 H 0.30 8.16 6.68 -40.82 -0.27 7.88 16 LS Contribution 367.75 15.07 5.54 5.54 Total: -1.00 -31.60 367.75 -9.78 -41.37 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: -6.34 Total: 9.34 kcal Atomic # 6 Polarization: -19.59 SS G_CDS: -3.04 Total: -22.63 kcal Atomic # 7 Polarization: -37.33 SS G_CDS: -0.94 Total: -38.27 kcal Atomic # 8 Polarization: -12.47 SS G_CDS: 0.09 Total: -12.38 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.10 Total: 17.03 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.60 -9.78 -41.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000913520302.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.264 kcal (2) G-P(sol) polarization free energy of solvation -31.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.375 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds