Wall clock time and date at job start Fri Apr 10 2020 17:48:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86799 * 120.00122 * 2 1 4 4 H 1.48498 * 109.47003 * 0.02562 * 3 2 1 5 5 H 1.48501 * 109.47031 * 120.00496 * 3 2 1 6 6 H 1.48500 * 109.46807 * 240.00484 * 3 2 1 7 7 C 1.38813 * 119.99539 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99569 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00348 * 359.97438 * 7 2 1 10 10 C 1.46499 * 120.00313 * 180.02562 * 9 7 2 11 11 H 1.09001 * 110.63547 * 34.29820 * 10 9 7 12 12 C 1.55153 * 110.72116 * 271.16229 * 10 9 7 13 13 C 1.54908 * 101.58086 * 206.13338 * 12 10 9 14 14 N 1.47416 * 104.83375 * 37.00555 * 13 12 10 15 15 C 1.34779 * 125.64997 * 155.83433 * 14 13 12 16 16 O 1.21284 * 120.00381 * 174.73880 * 15 14 13 17 17 C 1.50701 * 120.00014 * 354.74091 * 15 14 13 18 18 C 1.53002 * 109.54162 * 293.91278 * 17 15 14 19 19 F 1.39899 * 109.46770 * 294.61084 * 18 17 15 20 20 C 1.53180 * 109.54718 * 173.73332 * 17 15 14 21 21 C 1.53285 * 109.06107 * 297.03476 * 20 17 15 22 22 O 1.42899 * 109.45670 * 302.43890 * 21 20 17 23 23 C 1.42905 * 114.10158 * 61.16481 * 22 21 20 24 24 C 1.53089 * 109.40889 * 298.84132 * 23 22 21 25 25 C 1.47322 * 108.73729 * 335.71681 * 14 13 12 26 26 H 0.96998 * 120.00548 * 180.02562 * 1 2 3 27 27 H 0.97004 * 119.99719 * 0.02562 * 9 7 2 28 28 H 1.09000 * 111.00457 * 324.20422 * 12 10 9 29 29 H 1.09002 * 111.00618 * 88.05756 * 12 10 9 30 30 H 1.09002 * 110.37090 * 155.84767 * 13 12 10 31 31 H 1.09004 * 110.36755 * 278.05376 * 13 12 10 32 32 H 1.09004 * 109.47131 * 54.61382 * 18 17 15 33 33 H 1.09003 * 109.47059 * 174.61511 * 18 17 15 34 34 H 1.09000 * 109.51835 * 57.01645 * 20 17 15 35 35 H 1.08990 * 109.52418 * 177.20555 * 20 17 15 36 36 H 1.09001 * 109.45046 * 182.44573 * 21 20 17 37 37 H 1.08995 * 109.46856 * 62.44455 * 21 20 17 38 38 H 1.08999 * 109.48184 * 178.85908 * 23 22 21 39 39 H 1.09000 * 109.48848 * 58.82516 * 23 22 21 40 40 H 1.08999 * 109.52394 * 297.69700 * 24 23 22 41 41 H 1.09009 * 109.52231 * 177.51287 * 24 23 22 42 42 H 1.08999 * 110.06612 * 241.87050 * 25 14 13 43 43 H 1.09007 * 109.84408 * 120.61031 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2853 2.7464 0.0006 5 1 3.1041 1.6963 1.2125 6 1 3.1039 1.6963 -1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0579 -3.6568 -0.0005 11 1 2.9798 -3.5682 0.5743 12 6 2.3579 -4.1176 -1.4514 13 6 2.4678 -5.6525 -1.2738 14 7 1.4455 -5.9901 -0.2668 15 6 0.8559 -7.1930 -0.1187 16 8 0.0954 -7.3859 0.8062 17 6 1.1415 -8.2984 -1.1024 18 6 0.5883 -7.9160 -2.4767 19 9 -0.8072 -7.8401 -2.4130 20 6 0.4774 -9.5935 -0.6250 21 6 1.0954 -10.0085 0.7150 22 8 2.5072 -10.1656 0.5596 23 6 3.1865 -8.9737 0.1593 24 6 2.6542 -8.5177 -1.2017 25 6 1.1766 -4.7961 0.5532 26 1 -0.4851 -0.8400 0.0004 27 1 0.3555 -2.3880 -0.0005 28 1 1.5372 -3.8595 -2.1208 29 1 3.2981 -3.6972 -1.8084 30 1 2.2552 -6.1595 -2.2150 31 1 3.4607 -5.9226 -0.9142 32 1 0.9917 -6.9480 -2.7743 33 1 0.8781 -8.6707 -3.2078 34 1 -0.5928 -9.4293 -0.4995 35 1 0.6423 -10.3802 -1.3611 36 1 0.6581 -10.9528 1.0395 37 1 0.8951 -9.2397 1.4611 38 1 4.2555 -9.1725 0.0835 39 1 3.0137 -8.1911 0.8980 40 1 2.8630 -9.2827 -1.9495 41 1 3.1394 -7.5846 -1.4886 42 1 1.4341 -4.9916 1.5942 43 1 0.1243 -4.5225 0.4745 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969962316.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:48:44 Heat of formation + Delta-G solvation = -108.256031 kcal Electronic energy + Delta-G solvation = -26226.709270 eV Core-core repulsion = 22414.893751 eV Total energy + Delta-G solvation = -3811.815519 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 300.164 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -47.87661 -41.07500 -38.73896 -37.34726 -35.06834 -34.32452 -31.81973 -31.09835 -29.65436 -28.40261 -27.55398 -24.61046 -23.94526 -23.29915 -22.87510 -21.46137 -20.26374 -18.99912 -17.64840 -16.95218 -16.87823 -16.63233 -16.14518 -15.76077 -15.59502 -15.38948 -15.08913 -14.79272 -14.17716 -13.98460 -13.80043 -13.75180 -13.49023 -13.12984 -12.77515 -12.64500 -12.30078 -12.19645 -11.95486 -11.62601 -11.58049 -11.36775 -11.10824 -10.92356 -10.79601 -10.72427 -10.57640 -10.41026 -10.04476 -9.85844 -9.53663 -9.28309 -9.03628 -8.59191 -7.18614 -6.20252 -3.22974 2.50518 2.88652 3.46323 3.49404 3.65709 3.67342 3.95802 3.99059 4.27207 4.46858 4.57967 4.59035 4.63619 4.77324 4.86863 4.95265 5.10151 5.13466 5.14494 5.26737 5.28297 5.31604 5.39515 5.46950 5.47586 5.56590 5.61030 5.69580 5.76689 5.82087 5.89077 5.89617 6.05707 6.16227 6.36503 6.42451 6.71359 6.97718 7.51076 7.69184 8.09946 8.64477 9.08215 9.94941 10.08056 11.27369 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.026940 B = 0.003621 C = 0.003514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.086408 B = 7731.151033 C = 7967.334418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.040 4.040 3 Si 1.081 2.919 4 H -0.284 1.284 5 H -0.294 1.294 6 H -0.294 1.294 7 C -0.339 4.339 8 H 0.067 0.933 9 N -0.726 5.726 10 C 0.178 3.822 11 H 0.067 0.933 12 C -0.155 4.155 13 C 0.089 3.911 14 N -0.610 5.610 15 C 0.537 3.463 16 O -0.532 6.532 17 C -0.109 4.109 18 C 0.070 3.930 19 F -0.207 7.207 20 C -0.128 4.128 21 C 0.053 3.947 22 O -0.383 6.383 23 C 0.061 3.939 24 C -0.160 4.160 25 C 0.100 3.900 26 H 0.256 0.744 27 H 0.369 0.631 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.078 0.922 36 H 0.095 0.905 37 H 0.072 0.928 38 H 0.100 0.900 39 H 0.051 0.949 40 H 0.087 0.913 41 H 0.095 0.905 42 H 0.067 0.933 43 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.915 -19.844 -5.218 21.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.238 4.238 3 Si 0.911 3.089 4 H -0.210 1.210 5 H -0.221 1.221 6 H -0.222 1.222 7 C -0.470 4.470 8 H 0.085 0.915 9 N -0.368 5.368 10 C 0.066 3.934 11 H 0.085 0.915 12 C -0.197 4.197 13 C -0.034 4.034 14 N -0.344 5.344 15 C 0.324 3.676 16 O -0.408 6.408 17 C -0.112 4.112 18 C 0.015 3.985 19 F -0.188 7.188 20 C -0.166 4.166 21 C -0.024 4.024 22 O -0.302 6.302 23 C -0.016 4.016 24 C -0.197 4.197 25 C -0.023 4.023 26 H 0.067 0.933 27 H 0.203 0.797 28 H 0.093 0.907 29 H 0.098 0.902 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.104 0.896 33 H 0.105 0.895 34 H 0.107 0.893 35 H 0.097 0.903 36 H 0.113 0.887 37 H 0.090 0.910 38 H 0.118 0.882 39 H 0.069 0.931 40 H 0.105 0.895 41 H 0.114 0.886 42 H 0.086 0.914 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 6.576 -18.464 -4.643 20.142 hybrid contribution -0.287 -1.388 -0.239 1.437 sum 6.289 -19.852 -4.883 21.389 Atomic orbital electron populations 1.70887 1.06105 1.28592 1.52722 1.25825 0.96990 1.01106 0.99912 0.83236 0.74244 0.75509 0.75899 1.20971 1.22149 1.22165 1.20005 0.92042 0.85448 1.49468 0.91512 1.42373 1.04847 1.00348 1.89249 1.21103 0.94293 0.85204 0.92788 0.91507 1.23592 1.02927 0.91408 1.01737 1.22735 0.91308 0.98004 0.91344 1.48503 1.40810 1.10296 1.34776 1.19849 0.80116 0.81861 0.85775 1.90670 1.36447 1.80888 1.32840 1.21501 0.98233 0.95901 0.95604 1.22175 0.76564 1.03911 0.95857 1.92809 1.30641 1.97894 1.97427 1.22040 1.01644 0.94226 0.98733 1.22801 0.80433 1.02687 0.96437 1.87902 1.19978 1.33477 1.88822 1.22525 0.97132 0.88038 0.93866 1.22570 0.92538 1.04234 1.00367 1.22401 1.01037 0.84263 0.94587 0.93273 0.79670 0.90689 0.90249 0.90923 0.91007 0.89627 0.89503 0.89286 0.90338 0.88707 0.90981 0.88236 0.93088 0.89455 0.88635 0.91420 0.91272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -28.44 13.70 55.49 0.76 -27.68 16 2 C -0.04 -1.13 5.50 -17.43 -0.10 -1.22 16 3 Si 1.08 25.06 29.92 -169.99 -5.09 19.97 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.29 -6.48 7.11 56.52 0.40 -6.07 16 7 C -0.34 -9.08 9.97 -15.06 -0.15 -9.23 16 8 H 0.07 1.74 7.83 -52.48 -0.41 1.33 16 9 N -0.73 -17.31 5.23 -51.66 -0.27 -17.58 16 10 C 0.18 3.28 3.59 -66.10 -0.24 3.05 16 11 H 0.07 1.24 8.11 -51.93 -0.42 0.82 16 12 C -0.16 -2.36 6.77 -24.59 -0.17 -2.52 16 13 C 0.09 1.03 4.78 -2.53 -0.01 1.02 16 14 N -0.61 -8.85 3.33 -170.28 -0.57 -9.42 16 15 C 0.54 7.99 5.00 -10.98 -0.05 7.94 16 16 O -0.53 -9.77 14.43 5.55 0.08 -9.69 16 17 C -0.11 -1.20 0.36 -155.47 -0.06 -1.26 16 18 C 0.07 0.70 6.20 37.16 0.23 0.93 16 19 F -0.21 -2.83 16.54 2.25 0.04 -2.80 16 20 C -0.13 -1.41 4.35 -26.49 -0.12 -1.53 16 21 C 0.05 0.61 6.56 37.30 0.24 0.86 16 22 O -0.38 -4.53 10.77 -35.23 -0.38 -4.91 16 23 C 0.06 0.61 6.62 37.20 0.25 0.86 16 24 C -0.16 -1.36 4.63 -26.59 -0.12 -1.48 16 25 C 0.10 1.72 6.65 -2.90 -0.02 1.71 16 26 H 0.26 7.67 6.77 -40.82 -0.28 7.40 16 27 H 0.37 9.28 6.37 -40.82 -0.26 9.02 16 28 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 29 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 30 H 0.07 0.67 4.36 -51.93 -0.23 0.45 16 31 H 0.07 0.69 7.27 -51.93 -0.38 0.32 16 32 H 0.09 0.81 5.31 -51.93 -0.28 0.54 16 33 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.09 1.11 7.59 -51.93 -0.39 0.72 16 35 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.07 1.01 6.04 -51.93 -0.31 0.70 16 38 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.05 0.59 7.38 -51.93 -0.38 0.21 16 40 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.10 0.71 4.04 -51.92 -0.21 0.50 16 42 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 43 H 0.07 1.33 7.70 -51.92 -0.40 0.93 16 LS Contribution 330.11 15.07 4.97 4.97 Total: -1.00 -32.96 330.11 -6.89 -39.85 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: -6.13 Total: 8.16 kcal Atomic # 6 Polarization: -0.57 SS G_CDS: -0.31 Total: -0.88 kcal Atomic # 7 Polarization: -54.60 SS G_CDS: -0.08 Total: -54.68 kcal Atomic # 8 Polarization: -14.29 SS G_CDS: -0.30 Total: -14.59 kcal Atomic # 9 Polarization: -2.83 SS G_CDS: 0.04 Total: -2.80 kcal Atomic # 14 Polarization: 25.06 SS G_CDS: -5.09 Total: 19.97 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -32.96 -6.89 -39.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969962316.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.408 kcal (2) G-P(sol) polarization free energy of solvation -32.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds