Wall clock time and date at job start Fri Apr 10 2020 17:48:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86799 * 120.00122 * 2 1 4 4 H 1.48498 * 109.47003 * 0.02562 * 3 2 1 5 5 H 1.48501 * 109.47031 * 120.00496 * 3 2 1 6 6 H 1.48500 * 109.46807 * 240.00484 * 3 2 1 7 7 C 1.38813 * 119.99539 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99569 * 179.97438 * 7 2 1 9 9 N 1.36932 * 120.00348 * 359.97438 * 7 2 1 10 10 C 1.46499 * 120.00313 * 180.02562 * 9 7 2 11 11 H 1.09001 * 110.63547 * 34.29820 * 10 9 7 12 12 C 1.55153 * 110.72116 * 271.16229 * 10 9 7 13 13 C 1.54908 * 101.58086 * 206.13338 * 12 10 9 14 14 N 1.47416 * 104.83375 * 37.00555 * 13 12 10 15 15 C 1.34779 * 125.64997 * 155.83433 * 14 13 12 16 16 O 1.21284 * 120.00381 * 174.73880 * 15 14 13 17 17 C 1.50701 * 120.00014 * 354.74091 * 15 14 13 18 18 C 1.53002 * 109.54162 * 293.91278 * 17 15 14 19 19 F 1.39899 * 109.46770 * 294.61084 * 18 17 15 20 20 C 1.53180 * 109.54718 * 173.73332 * 17 15 14 21 21 C 1.53285 * 109.06107 * 297.03476 * 20 17 15 22 22 O 1.42899 * 109.45670 * 302.43890 * 21 20 17 23 23 C 1.42905 * 114.10158 * 61.16481 * 22 21 20 24 24 C 1.53089 * 109.40889 * 298.84132 * 23 22 21 25 25 C 1.47322 * 108.73729 * 335.71681 * 14 13 12 26 26 H 0.96998 * 120.00548 * 180.02562 * 1 2 3 27 27 H 0.97004 * 119.99719 * 0.02562 * 9 7 2 28 28 H 1.09000 * 111.00457 * 324.20422 * 12 10 9 29 29 H 1.09002 * 111.00618 * 88.05756 * 12 10 9 30 30 H 1.09002 * 110.37090 * 155.84767 * 13 12 10 31 31 H 1.09004 * 110.36755 * 278.05376 * 13 12 10 32 32 H 1.09004 * 109.47131 * 54.61382 * 18 17 15 33 33 H 1.09003 * 109.47059 * 174.61511 * 18 17 15 34 34 H 1.09000 * 109.51835 * 57.01645 * 20 17 15 35 35 H 1.08990 * 109.52418 * 177.20555 * 20 17 15 36 36 H 1.09001 * 109.45046 * 182.44573 * 21 20 17 37 37 H 1.08995 * 109.46856 * 62.44455 * 21 20 17 38 38 H 1.08999 * 109.48184 * 178.85908 * 23 22 21 39 39 H 1.09000 * 109.48848 * 58.82516 * 23 22 21 40 40 H 1.08999 * 109.52394 * 297.69700 * 24 23 22 41 41 H 1.09009 * 109.52231 * 177.51287 * 24 23 22 42 42 H 1.08999 * 110.06612 * 241.87050 * 25 14 13 43 43 H 1.09007 * 109.84408 * 120.61031 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2853 2.7464 0.0006 5 1 3.1041 1.6963 1.2125 6 1 3.1039 1.6963 -1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0579 -3.6568 -0.0005 11 1 2.9798 -3.5682 0.5743 12 6 2.3579 -4.1176 -1.4514 13 6 2.4678 -5.6525 -1.2738 14 7 1.4455 -5.9901 -0.2668 15 6 0.8559 -7.1930 -0.1187 16 8 0.0954 -7.3859 0.8062 17 6 1.1415 -8.2984 -1.1024 18 6 0.5883 -7.9160 -2.4767 19 9 -0.8072 -7.8401 -2.4130 20 6 0.4774 -9.5935 -0.6250 21 6 1.0954 -10.0085 0.7150 22 8 2.5072 -10.1656 0.5596 23 6 3.1865 -8.9737 0.1593 24 6 2.6542 -8.5177 -1.2017 25 6 1.1766 -4.7961 0.5532 26 1 -0.4851 -0.8400 0.0004 27 1 0.3555 -2.3880 -0.0005 28 1 1.5372 -3.8595 -2.1208 29 1 3.2981 -3.6972 -1.8084 30 1 2.2552 -6.1595 -2.2150 31 1 3.4607 -5.9226 -0.9142 32 1 0.9917 -6.9480 -2.7743 33 1 0.8781 -8.6707 -3.2078 34 1 -0.5928 -9.4293 -0.4995 35 1 0.6423 -10.3802 -1.3611 36 1 0.6581 -10.9528 1.0395 37 1 0.8951 -9.2397 1.4611 38 1 4.2555 -9.1725 0.0835 39 1 3.0137 -8.1911 0.8980 40 1 2.8630 -9.2827 -1.9495 41 1 3.1394 -7.5846 -1.4886 42 1 1.4341 -4.9916 1.5942 43 1 0.1243 -4.5225 0.4745 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969962316.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:48:43 Heat of formation + Delta-G solvation = -131.912496 kcal Electronic energy + Delta-G solvation = -26227.735091 eV Core-core repulsion = 22414.893751 eV Total energy + Delta-G solvation = -3812.841340 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 300.164 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -48.79519 -42.11421 -39.83389 -38.61582 -36.46342 -35.65194 -33.35447 -32.08123 -31.04889 -29.52730 -28.78262 -25.92101 -25.28311 -24.54889 -23.85255 -22.48879 -21.72248 -20.08543 -19.56457 -17.96702 -17.91617 -17.53644 -17.06528 -16.82390 -16.79881 -16.56424 -16.40755 -15.92906 -15.62947 -15.28152 -15.04337 -14.88353 -14.68629 -14.18167 -14.15965 -13.64382 -13.51605 -13.30127 -13.13165 -12.83542 -12.65957 -12.53388 -12.46263 -12.23517 -12.16964 -11.89097 -11.80431 -11.68876 -11.51529 -11.29882 -10.97118 -10.81622 -10.49560 -9.82631 -9.18204 -8.40522 -5.37095 1.37843 1.59843 1.69799 1.72959 1.85760 2.71806 2.85610 3.06359 3.17653 3.36184 3.43807 3.53856 3.58031 3.67938 3.85341 3.90195 3.98075 4.11876 4.15048 4.20809 4.24389 4.31618 4.38674 4.42184 4.51762 4.52972 4.63865 4.69516 4.72670 4.80369 4.84909 4.94358 4.98678 5.03936 5.09534 5.14267 5.31620 5.59272 6.14422 6.36576 6.45429 6.93306 7.03058 7.91705 8.05332 9.10527 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.026940 B = 0.003621 C = 0.003514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.086408 B = 7731.151033 C = 7967.334418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.977 5.977 2 C -0.104 4.104 3 Si 1.129 2.871 4 H -0.298 1.298 5 H -0.277 1.277 6 H -0.272 1.272 7 C -0.329 4.329 8 H 0.077 0.923 9 N -0.744 5.744 10 C 0.171 3.829 11 H 0.071 0.929 12 C -0.145 4.145 13 C 0.094 3.906 14 N -0.610 5.610 15 C 0.528 3.472 16 O -0.578 6.578 17 C -0.104 4.104 18 C 0.062 3.938 19 F -0.232 7.232 20 C -0.126 4.126 21 C 0.054 3.946 22 O -0.391 6.391 23 C 0.053 3.947 24 C -0.151 4.151 25 C 0.109 3.891 26 H 0.242 0.758 27 H 0.357 0.643 28 H 0.055 0.945 29 H 0.094 0.906 30 H 0.108 0.892 31 H 0.105 0.895 32 H 0.093 0.907 33 H 0.132 0.868 34 H 0.065 0.935 35 H 0.108 0.892 36 H 0.109 0.891 37 H 0.038 0.962 38 H 0.127 0.873 39 H 0.025 0.975 40 H 0.121 0.879 41 H 0.112 0.888 42 H 0.059 0.941 43 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.987 -21.585 -7.443 24.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.625 5.625 2 C -0.295 4.295 3 Si 0.953 3.047 4 H -0.225 1.225 5 H -0.203 1.203 6 H -0.198 1.198 7 C -0.460 4.460 8 H 0.095 0.905 9 N -0.385 5.385 10 C 0.061 3.939 11 H 0.089 0.911 12 C -0.186 4.186 13 C -0.027 4.027 14 N -0.343 5.343 15 C 0.318 3.682 16 O -0.457 6.457 17 C -0.108 4.108 18 C 0.008 3.992 19 F -0.213 7.213 20 C -0.164 4.164 21 C -0.022 4.022 22 O -0.310 6.310 23 C -0.023 4.023 24 C -0.188 4.188 25 C -0.015 4.015 26 H 0.052 0.948 27 H 0.189 0.811 28 H 0.074 0.926 29 H 0.113 0.887 30 H 0.126 0.874 31 H 0.123 0.877 32 H 0.111 0.889 33 H 0.150 0.850 34 H 0.084 0.916 35 H 0.127 0.873 36 H 0.127 0.873 37 H 0.056 0.944 38 H 0.145 0.855 39 H 0.044 0.956 40 H 0.139 0.861 41 H 0.130 0.870 42 H 0.078 0.922 43 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 9.713 -20.267 -6.895 23.508 hybrid contribution -1.220 -0.943 0.523 1.628 sum 8.493 -21.210 -6.372 23.719 Atomic orbital electron populations 1.71004 1.07470 1.27792 1.56232 1.27242 0.96973 1.04874 1.00431 0.82620 0.73334 0.71391 0.77329 1.22466 1.20347 1.19818 1.20384 0.92605 0.86394 1.46635 0.90528 1.42582 1.04514 1.01661 1.89761 1.21319 0.93781 0.83428 0.95350 0.91149 1.23382 1.02829 0.94159 0.98205 1.22974 0.92024 0.95414 0.92287 1.48565 1.41488 1.09399 1.34858 1.20767 0.79052 0.82480 0.85909 1.90653 1.38383 1.81724 1.34975 1.21583 1.00524 0.93814 0.94842 1.22531 0.74969 1.05873 0.95872 1.92766 1.32958 1.98069 1.97514 1.22032 1.00179 0.95149 0.99045 1.22724 0.80964 1.02327 0.96198 1.87892 1.19696 1.34360 1.89054 1.22736 0.98594 0.86890 0.94082 1.22619 0.89892 1.06107 1.00201 1.22044 0.99048 0.85532 0.94858 0.94805 0.81092 0.92622 0.88719 0.87419 0.87669 0.88886 0.85009 0.91578 0.87339 0.87343 0.94364 0.85476 0.95648 0.86077 0.86990 0.92250 0.94235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -61.13 13.70 21.65 0.30 -60.83 16 2 C -0.10 -5.92 5.50 84.86 0.47 -5.45 16 3 Si 1.13 50.42 29.92 68.60 2.05 52.47 16 4 H -0.30 -13.91 7.11 99.48 0.71 -13.20 16 5 H -0.28 -11.49 7.11 99.48 0.71 -10.78 16 6 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 7 C -0.33 -17.66 9.97 84.03 0.84 -16.82 16 8 H 0.08 3.89 7.83 -2.91 -0.02 3.87 16 9 N -0.74 -36.30 5.23 -317.35 -1.66 -37.97 16 10 C 0.17 6.28 3.59 46.18 0.17 6.44 16 11 H 0.07 2.54 8.11 -2.39 -0.02 2.52 16 12 C -0.15 -4.11 6.77 31.98 0.22 -3.89 16 13 C 0.09 1.85 4.78 86.86 0.42 2.27 16 14 N -0.61 -17.17 3.33 -811.04 -2.70 -19.86 16 15 C 0.53 15.53 5.00 87.66 0.44 15.97 16 16 O -0.58 -22.23 14.43 -3.04 -0.04 -22.28 16 17 C -0.10 -2.02 0.36 -52.81 -0.02 -2.04 16 18 C 0.06 1.02 6.20 71.98 0.45 1.46 16 19 F -0.23 -6.03 16.54 44.97 0.74 -5.29 16 20 C -0.13 -2.55 4.35 30.75 0.13 -2.42 16 21 C 0.05 1.23 6.56 72.08 0.47 1.70 16 22 O -0.39 -8.38 10.77 -148.98 -1.60 -9.99 16 23 C 0.05 0.90 6.62 72.01 0.48 1.38 16 24 C -0.15 -1.85 4.63 30.68 0.14 -1.71 16 25 C 0.11 3.90 6.65 86.67 0.58 4.47 16 26 H 0.24 15.23 6.77 -92.71 -0.63 14.60 16 27 H 0.36 18.92 6.37 -92.71 -0.59 18.33 16 28 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 29 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 30 H 0.11 1.45 4.36 -2.39 -0.01 1.44 16 31 H 0.11 1.48 7.27 -2.39 -0.02 1.47 16 32 H 0.09 1.37 5.31 -2.39 -0.01 1.36 16 33 H 0.13 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.07 1.65 7.59 -2.39 -0.02 1.63 16 35 H 0.11 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 37 H 0.04 1.12 6.04 -2.39 -0.01 1.11 16 38 H 0.13 1.42 8.14 -2.39 -0.02 1.41 16 39 H 0.03 0.55 7.38 -2.39 -0.02 0.54 16 40 H 0.12 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.11 1.00 4.04 -2.38 -0.01 0.99 16 42 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 43 H 0.04 1.63 7.70 -2.38 -0.02 1.61 16 Total: -1.00 -76.58 330.11 2.44 -74.14 By element: Atomic # 1 Polarization: 27.65 SS G_CDS: 0.59 Total: 28.24 kcal Atomic # 6 Polarization: -3.41 SS G_CDS: 4.77 Total: 1.36 kcal Atomic # 7 Polarization: -114.60 SS G_CDS: -4.06 Total: -118.66 kcal Atomic # 8 Polarization: -30.62 SS G_CDS: -1.65 Total: -32.26 kcal Atomic # 9 Polarization: -6.03 SS G_CDS: 0.74 Total: -5.29 kcal Atomic # 14 Polarization: 50.42 SS G_CDS: 2.05 Total: 52.47 kcal Total: -76.58 2.44 -74.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969962316.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.773 kcal (2) G-P(sol) polarization free energy of solvation -76.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds