Wall clock time and date at job start Fri Apr 10 2020 17:48:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36941 * 119.99714 * 2 1 4 4 H 1.07994 * 120.00080 * 154.42117 * 3 2 1 5 5 C 1.38814 * 119.99917 * 334.13782 * 3 2 1 6 6 N 1.31619 * 119.99848 * 353.74365 * 5 3 2 7 7 Si 1.86799 * 119.99900 * 173.74027 * 5 3 2 8 8 H 1.48500 * 109.47262 * 90.00224 * 7 5 3 9 9 H 1.48501 * 109.47055 * 210.00590 * 7 5 3 10 10 H 1.48497 * 109.47152 * 330.00271 * 7 5 3 11 11 C 1.46494 * 120.00337 * 179.97438 * 2 1 3 12 12 H 1.08996 * 110.88931 * 180.70121 * 11 2 1 13 13 C 1.55162 * 111.00356 * 304.58367 * 11 2 1 14 14 C 1.54325 * 102.93961 * 153.57434 * 13 11 2 15 15 N 1.47015 * 107.27348 * 337.80977 * 14 13 11 16 16 C 1.34774 * 125.64713 * 179.00166 * 15 14 13 17 17 O 1.21284 * 120.00592 * 355.19736 * 16 15 14 18 18 C 1.50701 * 120.00199 * 175.20352 * 16 15 14 19 19 F 1.39900 * 109.54355 * 52.79183 * 18 16 15 20 20 C 1.53182 * 109.54448 * 292.61883 * 18 16 15 21 21 C 1.53101 * 109.15859 * 183.23816 * 20 18 16 22 22 O 1.42903 * 109.48714 * 57.47610 * 21 20 18 23 23 C 1.42912 * 114.09698 * 298.88774 * 22 21 20 24 24 C 1.53089 * 109.41411 * 61.15666 * 23 22 21 25 25 C 1.47468 * 108.72609 * 358.97109 * 15 14 13 26 26 H 1.09005 * 109.46859 * 94.23556 * 1 2 3 27 27 H 1.09001 * 109.47218 * 214.23346 * 1 2 3 28 28 H 1.08999 * 109.47642 * 334.23473 * 1 2 3 29 29 H 0.97000 * 119.99802 * 179.97438 * 6 5 3 30 30 H 1.08998 * 110.71471 * 271.93328 * 13 11 2 31 31 H 1.08995 * 110.72165 * 35.21319 * 13 11 2 32 32 H 1.09010 * 109.88043 * 97.22569 * 14 13 11 33 33 H 1.08997 * 109.88337 * 218.22989 * 14 13 11 34 34 H 1.09004 * 109.52040 * 303.05981 * 20 18 16 35 35 H 1.08997 * 109.52220 * 63.24106 * 20 18 16 36 36 H 1.08994 * 109.40989 * 297.49416 * 21 20 18 37 37 H 1.09000 * 109.48876 * 177.50269 * 21 20 18 38 38 H 1.08997 * 109.47957 * 301.17709 * 23 22 21 39 39 H 1.08993 * 109.48868 * 181.14970 * 23 22 21 40 40 H 1.08998 * 109.52025 * 182.48616 * 24 23 22 41 41 H 1.09005 * 109.52068 * 62.29915 * 24 23 22 42 42 H 1.09001 * 110.35057 * 265.26115 * 25 15 14 43 43 H 1.08997 * 110.40264 * 142.91638 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1502 1.2319 0.4038 5 6 1.5598 2.3279 -0.5244 6 7 0.3949 2.2472 -1.1319 7 14 2.4191 3.9791 -0.3678 8 1 3.2981 4.1933 -1.5453 9 1 1.4042 5.0612 -0.3042 10 1 3.2382 3.9953 0.8708 11 6 2.1975 -1.2686 0.0006 12 1 3.2737 -1.0960 0.0130 13 6 1.7636 -2.1609 1.1935 14 6 2.0558 -3.5874 0.6824 15 7 2.0777 -3.5288 -0.7864 16 6 2.3202 -4.5674 -1.6104 17 8 2.6311 -5.6461 -1.1513 18 6 2.2052 -4.3886 -3.1023 19 9 2.9818 -3.2964 -3.5040 20 6 0.7407 -4.1415 -3.4774 21 6 0.6221 -4.0417 -5.0006 22 8 1.1251 -5.2388 -5.5973 23 6 2.5034 -5.4946 -5.3199 24 6 2.6973 -5.6550 -3.8098 25 6 1.7898 -2.1458 -1.2095 26 1 -0.3633 -0.0759 -1.0249 27 1 -0.3634 -0.8496 0.5781 28 1 -0.3634 0.9255 0.4467 29 1 -0.0174 3.0452 -1.4980 30 1 2.3602 -1.9385 2.0783 31 1 0.7011 -2.0360 1.4020 32 1 3.0237 -3.9235 1.0545 33 1 1.2734 -4.2686 1.0170 34 1 0.1284 -4.9690 -3.1190 35 1 0.4001 -3.2114 -3.0225 36 1 1.2011 -3.1885 -5.3538 37 1 -0.4242 -3.9102 -5.2760 38 1 3.1070 -4.6603 -5.6772 39 1 2.8124 -6.4095 -5.8253 40 1 3.7546 -5.8062 -3.5923 41 1 2.1256 -6.5140 -3.4584 42 1 0.7273 -2.0280 -1.4225 43 1 2.3844 -1.8846 -2.0848 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000971658499.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:48:51 Heat of formation + Delta-G solvation = -97.176134 kcal Electronic energy + Delta-G solvation = -26284.887341 eV Core-core repulsion = 22473.552282 eV Total energy + Delta-G solvation = -3811.335059 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 300.164 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -48.04924 -39.98817 -38.83404 -37.54113 -34.85576 -33.28486 -31.79506 -31.35890 -29.99657 -27.89197 -26.17868 -26.12394 -23.95950 -23.55756 -22.40076 -20.56744 -19.51518 -19.40870 -17.39198 -17.08969 -16.79672 -16.24937 -16.00069 -15.87810 -15.33152 -15.25108 -14.72589 -14.45903 -13.90558 -13.51229 -13.39922 -13.30343 -12.82708 -12.73921 -12.66990 -12.62381 -12.42328 -12.13493 -12.01202 -11.59630 -11.43739 -10.95292 -10.90748 -10.85320 -10.72123 -10.52890 -10.48078 -10.31882 -10.07826 -9.96513 -9.87773 -9.49390 -8.65264 -8.44937 -6.85791 -5.86259 -3.34744 2.45799 2.93430 3.32090 3.38952 3.39993 3.66152 4.10430 4.18056 4.27719 4.43405 4.58140 4.67016 5.00573 5.03251 5.14300 5.18069 5.30776 5.33705 5.40116 5.43770 5.46471 5.50028 5.55824 5.69113 5.76363 5.80234 5.86215 5.95952 6.01881 6.19162 6.27257 6.42797 6.50378 6.73095 6.79936 6.95377 7.27659 7.59473 7.60007 7.71352 8.06138 8.30491 9.11952 9.72055 10.21821 11.19683 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.018404 B = 0.004458 C = 0.003952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.067943 B = 6279.907194 C = 7083.390989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.159 3.841 2 N -0.584 5.584 3 C -0.261 4.261 4 H 0.069 0.931 5 C 0.008 3.992 6 N -0.906 5.906 7 Si 0.908 3.092 8 H -0.286 1.286 9 H -0.289 1.289 10 H -0.279 1.279 11 C 0.174 3.826 12 H 0.079 0.921 13 C -0.155 4.155 14 C 0.111 3.889 15 N -0.600 5.600 16 C 0.514 3.486 17 O -0.538 6.538 18 C 0.113 3.887 19 F -0.187 7.187 20 C -0.177 4.177 21 C 0.063 3.937 22 O -0.381 6.381 23 C 0.060 3.940 24 C -0.158 4.158 25 C 0.066 3.934 26 H 0.018 0.982 27 H -0.003 1.003 28 H 0.063 0.937 29 H 0.255 0.745 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.065 0.935 33 H 0.062 0.938 34 H 0.093 0.907 35 H 0.098 0.902 36 H 0.062 0.938 37 H 0.105 0.895 38 H 0.059 0.941 39 H 0.102 0.898 40 H 0.090 0.910 41 H 0.098 0.902 42 H 0.071 0.929 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.944 -12.916 -4.445 13.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.304 5.304 3 C -0.391 4.391 4 H 0.087 0.913 5 C -0.191 4.191 6 N -0.551 5.551 7 Si 0.737 3.263 8 H -0.213 1.213 9 H -0.215 1.215 10 H -0.204 1.204 11 C 0.063 3.937 12 H 0.097 0.903 13 C -0.194 4.194 14 C -0.012 4.012 15 N -0.333 5.333 16 C 0.299 3.701 17 O -0.416 6.416 18 C 0.091 3.909 19 F -0.167 7.167 20 C -0.215 4.215 21 C -0.014 4.014 22 O -0.299 6.299 23 C -0.017 4.017 24 C -0.196 4.196 25 C -0.059 4.059 26 H 0.036 0.964 27 H 0.015 0.985 28 H 0.082 0.918 29 H 0.065 0.935 30 H 0.096 0.904 31 H 0.097 0.903 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.111 0.889 35 H 0.117 0.883 36 H 0.080 0.920 37 H 0.123 0.877 38 H 0.077 0.923 39 H 0.120 0.880 40 H 0.109 0.891 41 H 0.117 0.883 42 H 0.089 0.911 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 0.900 -13.434 -4.426 14.173 hybrid contribution 0.563 1.264 0.218 1.401 sum 1.463 -12.170 -4.208 12.959 Atomic orbital electron populations 1.20850 0.82394 0.97651 0.97674 1.43825 1.01898 0.99764 1.84889 1.19233 1.00007 0.85875 1.33964 0.91276 1.25123 0.97424 0.98931 0.97639 1.70037 1.16955 1.28092 1.39970 0.86213 0.78670 0.83403 0.77977 1.21264 1.21535 1.20412 1.21461 0.96552 0.85803 0.89863 0.90278 1.23220 1.02943 0.92876 1.00411 1.21958 1.01312 0.98557 0.79341 1.48539 1.67539 1.09861 1.07331 1.20314 0.77976 0.83748 0.88041 1.90688 1.47956 1.25828 1.77143 1.21103 0.92285 0.85700 0.91769 1.92887 1.76551 1.55788 1.91522 1.22843 0.93772 1.05590 0.99282 1.22576 1.00803 0.87611 0.90399 1.87936 1.25615 1.43161 1.73220 1.22622 0.83181 1.02156 0.93733 1.22574 1.04155 0.96547 0.96355 1.23517 1.01497 0.79056 1.01813 0.96378 0.98512 0.91813 0.93524 0.90438 0.90302 0.91698 0.91933 0.88858 0.88331 0.91959 0.87720 0.92304 0.87963 0.89105 0.88323 0.91075 0.89658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.61 7.89 59.85 0.47 4.08 16 2 N -0.58 -13.57 2.96 -171.03 -0.51 -14.08 16 3 C -0.26 -6.78 9.60 -15.06 -0.14 -6.92 16 4 H 0.07 1.76 7.84 -52.49 -0.41 1.35 16 5 C 0.01 0.20 5.17 -17.43 -0.09 0.11 16 6 N -0.91 -24.99 10.58 55.49 0.59 -24.41 16 7 Si 0.91 20.94 29.56 -169.99 -5.02 15.92 16 8 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 9 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 10 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 11 C 0.17 3.34 3.54 -65.78 -0.23 3.10 16 12 H 0.08 1.56 7.95 -51.93 -0.41 1.14 16 13 C -0.15 -2.47 6.51 -24.89 -0.16 -2.63 16 14 C 0.11 1.68 6.87 -3.07 -0.02 1.66 16 15 N -0.60 -9.78 3.33 -170.48 -0.57 -10.35 16 16 C 0.51 8.39 6.89 -10.99 -0.08 8.31 16 17 O -0.54 -9.86 16.26 5.55 0.09 -9.77 16 18 C 0.11 1.58 0.77 -91.58 -0.07 1.51 16 19 F -0.19 -2.87 13.85 2.25 0.03 -2.84 16 20 C -0.18 -2.19 5.08 -26.59 -0.14 -2.32 16 21 C 0.06 0.71 6.72 37.21 0.25 0.96 16 22 O -0.38 -4.56 10.77 -35.23 -0.38 -4.94 16 23 C 0.06 0.63 6.72 37.20 0.25 0.88 16 24 C -0.16 -1.89 4.58 -26.59 -0.12 -2.01 16 25 C 0.07 1.15 5.20 -2.50 -0.01 1.14 16 26 H 0.02 0.43 7.62 -51.93 -0.40 0.04 16 27 H 0.00 -0.07 6.11 -51.93 -0.32 -0.38 16 28 H 0.06 1.61 6.70 -51.93 -0.35 1.26 16 29 H 0.25 6.84 8.31 -40.82 -0.34 6.50 16 30 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.08 1.29 6.10 -51.93 -0.32 0.97 16 32 H 0.06 0.96 8.14 -51.92 -0.42 0.53 16 33 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.10 1.28 6.08 -51.93 -0.32 0.97 16 36 H 0.06 0.72 7.93 -51.93 -0.41 0.31 16 37 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 38 H 0.06 0.61 7.93 -51.93 -0.41 0.20 16 39 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.10 1.19 7.93 -51.93 -0.41 0.78 16 42 H 0.07 1.28 6.10 -51.93 -0.32 0.96 16 43 H 0.09 1.57 6.03 -51.93 -0.31 1.26 16 LS Contribution 333.80 15.07 5.03 5.03 Total: -1.00 -29.35 333.80 -7.31 -36.67 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -6.48 Total: 0.92 kcal Atomic # 6 Polarization: 7.95 SS G_CDS: -0.09 Total: 7.86 kcal Atomic # 7 Polarization: -48.35 SS G_CDS: -0.49 Total: -48.83 kcal Atomic # 8 Polarization: -14.42 SS G_CDS: -0.29 Total: -14.71 kcal Atomic # 9 Polarization: -2.87 SS G_CDS: 0.03 Total: -2.84 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -29.35 -7.31 -36.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971658499.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.511 kcal (2) G-P(sol) polarization free energy of solvation -29.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds