Wall clock time and date at job start Fri Apr 10 2020 17:48:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36941 * 119.99714 * 2 1 4 4 H 1.07994 * 120.00080 * 154.42117 * 3 2 1 5 5 C 1.38814 * 119.99917 * 334.13782 * 3 2 1 6 6 N 1.31619 * 119.99848 * 353.74365 * 5 3 2 7 7 Si 1.86799 * 119.99900 * 173.74027 * 5 3 2 8 8 H 1.48500 * 109.47262 * 90.00224 * 7 5 3 9 9 H 1.48501 * 109.47055 * 210.00590 * 7 5 3 10 10 H 1.48497 * 109.47152 * 330.00271 * 7 5 3 11 11 C 1.46494 * 120.00337 * 179.97438 * 2 1 3 12 12 H 1.08996 * 110.88931 * 180.70121 * 11 2 1 13 13 C 1.55162 * 111.00356 * 304.58367 * 11 2 1 14 14 C 1.54325 * 102.93961 * 153.57434 * 13 11 2 15 15 N 1.47015 * 107.27348 * 337.80977 * 14 13 11 16 16 C 1.34774 * 125.64713 * 179.00166 * 15 14 13 17 17 O 1.21284 * 120.00592 * 355.19736 * 16 15 14 18 18 C 1.50701 * 120.00199 * 175.20352 * 16 15 14 19 19 F 1.39900 * 109.54355 * 52.79183 * 18 16 15 20 20 C 1.53182 * 109.54448 * 292.61883 * 18 16 15 21 21 C 1.53101 * 109.15859 * 183.23816 * 20 18 16 22 22 O 1.42903 * 109.48714 * 57.47610 * 21 20 18 23 23 C 1.42912 * 114.09698 * 298.88774 * 22 21 20 24 24 C 1.53089 * 109.41411 * 61.15666 * 23 22 21 25 25 C 1.47468 * 108.72609 * 358.97109 * 15 14 13 26 26 H 1.09005 * 109.46859 * 94.23556 * 1 2 3 27 27 H 1.09001 * 109.47218 * 214.23346 * 1 2 3 28 28 H 1.08999 * 109.47642 * 334.23473 * 1 2 3 29 29 H 0.97000 * 119.99802 * 179.97438 * 6 5 3 30 30 H 1.08998 * 110.71471 * 271.93328 * 13 11 2 31 31 H 1.08995 * 110.72165 * 35.21319 * 13 11 2 32 32 H 1.09010 * 109.88043 * 97.22569 * 14 13 11 33 33 H 1.08997 * 109.88337 * 218.22989 * 14 13 11 34 34 H 1.09004 * 109.52040 * 303.05981 * 20 18 16 35 35 H 1.08997 * 109.52220 * 63.24106 * 20 18 16 36 36 H 1.08994 * 109.40989 * 297.49416 * 21 20 18 37 37 H 1.09000 * 109.48876 * 177.50269 * 21 20 18 38 38 H 1.08997 * 109.47957 * 301.17709 * 23 22 21 39 39 H 1.08993 * 109.48868 * 181.14970 * 23 22 21 40 40 H 1.08998 * 109.52025 * 182.48616 * 24 23 22 41 41 H 1.09005 * 109.52068 * 62.29915 * 24 23 22 42 42 H 1.09001 * 110.35057 * 265.26115 * 25 15 14 43 43 H 1.08997 * 110.40264 * 142.91638 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1502 1.2319 0.4038 5 6 1.5598 2.3279 -0.5244 6 7 0.3949 2.2472 -1.1319 7 14 2.4191 3.9791 -0.3678 8 1 3.2981 4.1933 -1.5453 9 1 1.4042 5.0612 -0.3042 10 1 3.2382 3.9953 0.8708 11 6 2.1975 -1.2686 0.0006 12 1 3.2737 -1.0960 0.0130 13 6 1.7636 -2.1609 1.1935 14 6 2.0558 -3.5874 0.6824 15 7 2.0777 -3.5288 -0.7864 16 6 2.3202 -4.5674 -1.6104 17 8 2.6311 -5.6461 -1.1513 18 6 2.2052 -4.3886 -3.1023 19 9 2.9818 -3.2964 -3.5040 20 6 0.7407 -4.1415 -3.4774 21 6 0.6221 -4.0417 -5.0006 22 8 1.1251 -5.2388 -5.5973 23 6 2.5034 -5.4946 -5.3199 24 6 2.6973 -5.6550 -3.8098 25 6 1.7898 -2.1458 -1.2095 26 1 -0.3633 -0.0759 -1.0249 27 1 -0.3634 -0.8496 0.5781 28 1 -0.3634 0.9255 0.4467 29 1 -0.0174 3.0452 -1.4980 30 1 2.3602 -1.9385 2.0783 31 1 0.7011 -2.0360 1.4020 32 1 3.0237 -3.9235 1.0545 33 1 1.2734 -4.2686 1.0170 34 1 0.1284 -4.9690 -3.1190 35 1 0.4001 -3.2114 -3.0225 36 1 1.2011 -3.1885 -5.3538 37 1 -0.4242 -3.9102 -5.2760 38 1 3.1070 -4.6603 -5.6772 39 1 2.8124 -6.4095 -5.8253 40 1 3.7546 -5.8062 -3.5923 41 1 2.1256 -6.5140 -3.4584 42 1 0.7273 -2.0280 -1.4225 43 1 2.3844 -1.8846 -2.0848 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000971658499.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:48:51 Heat of formation + Delta-G solvation = -115.023161 kcal Electronic energy + Delta-G solvation = -26285.661246 eV Core-core repulsion = 22473.552282 eV Total energy + Delta-G solvation = -3812.108964 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 300.164 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -49.22254 -41.28033 -39.86036 -38.95370 -36.57445 -34.34946 -33.44798 -32.38999 -31.44948 -29.41409 -28.04173 -27.27044 -25.16182 -24.88699 -23.80770 -21.64532 -21.05057 -20.67864 -18.98621 -18.55133 -17.96157 -17.44289 -17.28298 -17.04914 -16.65355 -16.30713 -16.16302 -15.66788 -15.33826 -15.04162 -14.82686 -14.67140 -14.43180 -14.16146 -13.78752 -13.65958 -13.56281 -13.47677 -13.38181 -13.08974 -12.76520 -12.54164 -12.47385 -12.37296 -12.16019 -12.04306 -11.87398 -11.81472 -11.67896 -11.44146 -11.09894 -10.61592 -10.59269 -9.82797 -8.75104 -7.85537 -5.35328 1.16384 1.48889 1.50226 1.58307 1.67867 2.49907 2.78161 2.94541 3.14252 3.22175 3.30544 3.52460 3.62750 3.75702 3.85329 3.88575 4.11454 4.15498 4.22066 4.26702 4.38101 4.41358 4.49386 4.54844 4.66572 4.68796 4.78475 4.79844 4.83837 4.90130 4.97814 5.01952 5.10423 5.19620 5.27078 5.43187 5.63949 5.74897 6.08427 6.25034 6.34826 6.75653 7.15481 7.83480 8.28183 9.18621 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.018404 B = 0.004458 C = 0.003952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.067943 B = 6279.907194 C = 7083.390989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.175 3.825 2 N -0.598 5.598 3 C -0.268 4.268 4 H 0.071 0.929 5 C -0.043 4.043 6 N -0.934 5.934 7 Si 0.967 3.033 8 H -0.287 1.287 9 H -0.294 1.294 10 H -0.270 1.270 11 C 0.165 3.835 12 H 0.072 0.928 13 C -0.139 4.139 14 C 0.112 3.888 15 N -0.601 5.601 16 C 0.511 3.489 17 O -0.557 6.557 18 C 0.108 3.892 19 F -0.197 7.197 20 C -0.172 4.172 21 C 0.064 3.936 22 O -0.389 6.389 23 C 0.060 3.940 24 C -0.154 4.154 25 C 0.083 3.917 26 H -0.002 1.002 27 H 0.028 0.972 28 H 0.034 0.966 29 H 0.250 0.750 30 H 0.090 0.910 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.100 0.900 35 H 0.089 0.911 36 H 0.057 0.943 37 H 0.124 0.876 38 H 0.059 0.941 39 H 0.129 0.871 40 H 0.092 0.908 41 H 0.098 0.902 42 H 0.068 0.932 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.317 -14.010 -4.401 14.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.319 5.319 3 C -0.398 4.398 4 H 0.088 0.912 5 C -0.238 4.238 6 N -0.580 5.580 7 Si 0.795 3.205 8 H -0.214 1.214 9 H -0.220 1.220 10 H -0.195 1.195 11 C 0.055 3.945 12 H 0.090 0.910 13 C -0.178 4.178 14 C -0.010 4.010 15 N -0.333 5.333 16 C 0.298 3.702 17 O -0.437 6.437 18 C 0.087 3.913 19 F -0.177 7.177 20 C -0.210 4.210 21 C -0.013 4.013 22 O -0.307 6.307 23 C -0.016 4.016 24 C -0.192 4.192 25 C -0.041 4.041 26 H 0.016 0.984 27 H 0.046 0.954 28 H 0.052 0.948 29 H 0.059 0.941 30 H 0.109 0.891 31 H 0.097 0.903 32 H 0.090 0.910 33 H 0.095 0.905 34 H 0.119 0.881 35 H 0.107 0.893 36 H 0.075 0.925 37 H 0.142 0.858 38 H 0.077 0.923 39 H 0.147 0.853 40 H 0.110 0.890 41 H 0.117 0.883 42 H 0.086 0.914 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 1.293 -14.560 -4.367 15.256 hybrid contribution 0.491 1.530 0.244 1.625 sum 1.784 -13.030 -4.123 13.783 Atomic orbital electron populations 1.20577 0.82405 0.97337 0.96664 1.43941 1.02105 1.00512 1.85349 1.19535 1.00071 0.87105 1.33094 0.91154 1.25791 0.98167 1.01872 0.98016 1.70185 1.18182 1.28378 1.41248 0.85286 0.77524 0.79710 0.77984 1.21361 1.22010 1.19503 1.21585 0.95870 0.84979 0.92017 0.91010 1.23069 1.03008 0.92347 0.99388 1.22025 1.02253 0.98135 0.78606 1.48559 1.67521 1.09293 1.07976 1.20733 0.77206 0.83270 0.88994 1.90675 1.48806 1.26428 1.77761 1.21285 0.93290 0.86329 0.90411 1.92867 1.76938 1.56468 1.91462 1.22831 0.92656 1.05354 1.00208 1.22637 1.01915 0.87334 0.89387 1.87933 1.26342 1.43255 1.73210 1.22761 0.82617 1.03475 0.92760 1.22587 1.04123 0.95279 0.97215 1.23140 1.00923 0.79552 1.00526 0.98350 0.95416 0.94751 0.94107 0.89101 0.90316 0.90985 0.90527 0.88107 0.89261 0.92491 0.85808 0.92292 0.85342 0.88983 0.88327 0.91426 0.90761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 7.97 7.89 127.77 1.01 8.97 16 2 N -0.60 -27.68 2.96 -695.02 -2.06 -29.73 16 3 C -0.27 -13.89 9.60 84.03 0.81 -13.08 16 4 H 0.07 3.55 7.84 -2.91 -0.02 3.53 16 5 C -0.04 -2.27 5.17 84.86 0.44 -1.83 16 6 N -0.93 -52.35 10.58 21.65 0.23 -52.12 16 7 Si 0.97 43.21 29.56 68.60 2.03 45.24 16 8 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 9 H -0.29 -13.23 7.11 99.48 0.71 -12.53 16 10 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 11 C 0.16 6.18 3.54 46.39 0.16 6.34 16 12 H 0.07 2.78 7.95 -2.39 -0.02 2.77 16 13 C -0.14 -4.15 6.51 31.78 0.21 -3.94 16 14 C 0.11 3.14 6.87 86.73 0.60 3.74 16 15 N -0.60 -18.81 3.33 -811.68 -2.70 -21.51 16 16 C 0.51 16.08 6.89 87.66 0.60 16.69 16 17 O -0.56 -19.63 16.26 -3.04 -0.05 -19.68 16 18 C 0.11 2.91 0.77 -11.42 -0.01 2.90 16 19 F -0.20 -5.95 13.85 44.97 0.62 -5.32 16 20 C -0.17 -4.07 5.08 30.69 0.16 -3.91 16 21 C 0.06 1.34 6.72 72.02 0.48 1.83 16 22 O -0.39 -8.55 10.77 -148.98 -1.60 -10.16 16 23 C 0.06 1.14 6.72 72.01 0.48 1.63 16 24 C -0.15 -3.45 4.58 30.68 0.14 -3.31 16 25 C 0.08 2.87 5.20 86.85 0.45 3.33 16 26 H 0.00 -0.09 7.62 -2.38 -0.02 -0.11 16 27 H 0.03 1.07 6.11 -2.39 -0.01 1.06 16 28 H 0.03 1.75 6.70 -2.39 -0.02 1.73 16 29 H 0.25 13.67 8.31 -92.71 -0.77 12.90 16 30 H 0.09 2.50 8.14 -2.39 -0.02 2.48 16 31 H 0.08 2.38 6.10 -2.39 -0.01 2.37 16 32 H 0.07 1.95 8.14 -2.38 -0.02 1.93 16 33 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 35 H 0.09 2.27 6.08 -2.39 -0.01 2.26 16 36 H 0.06 1.26 7.93 -2.39 -0.02 1.24 16 37 H 0.12 2.10 8.14 -2.39 -0.02 2.08 16 38 H 0.06 1.13 7.93 -2.39 -0.02 1.11 16 39 H 0.13 1.75 8.14 -2.39 -0.02 1.73 16 40 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 41 H 0.10 2.22 7.93 -2.38 -0.02 2.20 16 42 H 0.07 2.40 6.10 -2.39 -0.01 2.39 16 43 H 0.07 2.74 6.03 -2.39 -0.01 2.72 16 Total: -1.00 -61.84 333.80 3.01 -58.83 By element: Atomic # 1 Polarization: 14.10 SS G_CDS: 1.01 Total: 15.11 kcal Atomic # 6 Polarization: 13.81 SS G_CDS: 5.53 Total: 19.34 kcal Atomic # 7 Polarization: -98.84 SS G_CDS: -4.53 Total: -103.37 kcal Atomic # 8 Polarization: -28.19 SS G_CDS: -1.65 Total: -29.84 kcal Atomic # 9 Polarization: -5.95 SS G_CDS: 0.62 Total: -5.32 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Total: -61.84 3.01 -58.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971658499.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.192 kcal (2) G-P(sol) polarization free energy of solvation -61.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds