Wall clock time and date at job start Fri Apr 10 2020 17:48:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86804 * 119.99795 * 2 1 4 4 H 1.48494 * 109.47166 * 270.00034 * 3 2 1 5 5 H 1.48500 * 109.47160 * 30.00301 * 3 2 1 6 6 H 1.48501 * 109.46782 * 150.00033 * 3 2 1 7 7 C 1.38809 * 119.99850 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00216 * 359.97438 * 7 2 1 9 9 N 1.36939 * 119.99874 * 180.02562 * 7 2 1 10 10 C 1.46499 * 119.99937 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.46862 * 179.97438 * 10 9 7 12 12 H 1.08991 * 109.47110 * 59.99952 * 11 10 9 13 13 O 1.42896 * 109.47145 * 299.99385 * 11 10 9 14 14 C 1.53001 * 109.46851 * 179.97438 * 11 10 9 15 15 N 1.46502 * 109.47235 * 184.99921 * 14 11 10 16 16 C 1.34770 * 120.00217 * 179.97438 * 15 14 11 17 17 O 1.21283 * 119.99934 * 0.02562 * 16 15 14 18 18 C 1.50696 * 120.00120 * 180.02562 * 16 15 14 19 19 N 1.46901 * 109.47292 * 180.02562 * 18 16 15 20 20 C 1.47185 * 110.99948 * 189.99643 * 19 18 16 21 21 C 1.52993 * 108.72816 * 167.63413 * 20 19 18 22 22 N 1.46005 * 110.03969 * 50.29626 * 21 20 19 23 23 C 1.33714 * 122.93116 * 341.83456 * 22 21 20 24 24 O 1.21277 * 118.62879 * 181.40813 * 23 22 21 25 25 C 1.46905 * 111.00124 * 67.10538 * 19 18 16 26 26 H 0.97000 * 119.99786 * 359.97438 * 1 2 3 27 27 H 0.96996 * 120.00044 * 359.97438 * 9 7 2 28 28 H 1.09005 * 109.47230 * 59.99766 * 10 9 7 29 29 H 1.08997 * 109.46868 * 299.99855 * 10 9 7 30 30 H 0.96696 * 114.00425 * 300.00168 * 13 11 10 31 31 H 1.09008 * 109.47167 * 64.99910 * 14 11 10 32 32 H 1.08999 * 109.47309 * 305.00303 * 14 11 10 33 33 H 0.96998 * 119.99601 * 0.02562 * 15 14 11 34 34 H 1.08994 * 109.47097 * 60.00157 * 18 16 15 35 35 H 1.09002 * 109.46728 * 299.99974 * 18 16 15 36 36 H 1.08996 * 109.59592 * 47.86713 * 20 19 18 37 37 H 1.09000 * 109.60195 * 287.40777 * 20 19 18 38 38 H 1.08999 * 109.37341 * 290.12213 * 21 20 19 39 39 H 1.08996 * 109.37447 * 170.46886 * 21 20 19 40 40 H 0.96998 * 118.53435 * 161.82084 * 22 21 20 41 41 H 1.09007 * 109.38318 * 53.51062 * 25 19 18 42 42 H 1.09004 * 109.38421 * 293.82486 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 7 3.3797 -1.2021 0.0000 10 6 4.1121 -2.4709 -0.0011 11 6 5.6164 -2.1912 -0.0009 12 1 5.8797 -1.6205 0.8895 13 8 5.9616 -1.4410 -1.1670 14 6 6.3814 -3.5163 -0.0014 15 7 7.8172 -3.2513 0.1192 16 6 8.6921 -4.2762 0.1408 17 8 8.2909 -5.4179 0.0599 18 6 10.1690 -4.0036 0.2654 19 7 10.9035 -5.2758 0.2648 20 6 12.3166 -5.0692 0.6210 21 6 12.9550 -6.4297 0.9075 22 7 12.6686 -7.3565 -0.1838 23 6 11.6843 -7.1578 -1.0668 24 8 11.4987 -7.9917 -1.9276 25 6 10.8024 -5.9415 -1.0409 26 1 -0.4850 0.8401 0.0004 27 1 3.8647 -0.3621 0.0004 28 1 3.8491 -3.0415 -0.8919 29 1 3.8485 -3.0434 0.8881 30 1 5.7549 -1.8891 -1.9986 31 1 6.1870 -4.0477 -0.9331 32 1 6.0525 -4.1261 0.8400 33 1 8.1380 -2.3382 0.1842 34 1 10.3630 -3.4722 1.1970 35 1 10.4982 -3.3940 -0.5761 36 1 12.3815 -4.4408 1.5093 37 1 12.8363 -4.5889 -0.2080 38 1 12.5510 -6.8301 1.8373 39 1 14.0338 -6.3094 1.0060 40 1 13.2170 -8.1516 -0.2724 41 1 11.1152 -5.2510 -1.8242 42 1 9.7687 -6.2402 -1.2156 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699055110.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:48:59 Heat of formation + Delta-G solvation = -90.814078 kcal Electronic energy + Delta-G solvation = -24063.670003 eV Core-core repulsion = 20272.530786 eV Total energy + Delta-G solvation = -3791.139218 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 300.163 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.86441 -39.77439 -37.99930 -37.31891 -35.00122 -34.52814 -34.16210 -31.54133 -30.33411 -30.15289 -28.77323 -26.03525 -24.80790 -23.38585 -22.20197 -21.56207 -20.50712 -19.72418 -17.90208 -17.82658 -17.66435 -17.04459 -16.52315 -16.19145 -16.09509 -15.45625 -15.36432 -15.08557 -14.67537 -14.55835 -14.25701 -13.85604 -13.77222 -13.39901 -13.21618 -13.05146 -12.77333 -12.46620 -12.42743 -12.19305 -12.05041 -11.80012 -11.32601 -10.89502 -10.85484 -10.35467 -10.21709 -10.10274 -9.77535 -9.58355 -9.52764 -9.25395 -8.99529 -8.95371 -7.28591 -5.79909 -3.16416 2.26386 2.41956 2.64008 2.88152 3.35092 3.37171 3.41609 3.44607 4.09435 4.18020 4.34647 4.49266 4.56194 4.57203 4.58270 4.68390 4.77233 4.84473 4.88733 5.00954 5.09450 5.23121 5.36312 5.41428 5.48678 5.64734 5.75947 5.80992 6.10575 6.17041 6.23911 6.39064 6.42871 6.51580 6.85921 7.30465 7.72423 7.82540 7.95989 8.04359 8.38539 9.17954 9.89715 10.09283 11.38079 Molecular weight = 300.16amu Principal moments of inertia in cm(-1) A = 0.040497 B = 0.002267 C = 0.002210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.238322 B =12350.485002 C =12669.085130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.005 3.995 3 Si 0.889 3.111 4 H -0.284 1.284 5 H -0.292 1.292 6 H -0.277 1.277 7 C -0.248 4.248 8 H 0.090 0.910 9 N -0.749 5.749 10 C 0.130 3.870 11 C 0.085 3.915 12 H 0.104 0.896 13 O -0.557 6.557 14 C 0.091 3.909 15 N -0.722 5.722 16 C 0.509 3.491 17 O -0.523 6.523 18 C 0.034 3.966 19 N -0.515 5.515 20 C 0.032 3.968 21 C 0.117 3.883 22 N -0.722 5.722 23 C 0.529 3.471 24 O -0.551 6.551 25 C 0.033 3.967 26 H 0.260 0.740 27 H 0.366 0.634 28 H 0.032 0.968 29 H 0.038 0.962 30 H 0.377 0.623 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.404 0.596 34 H 0.112 0.888 35 H 0.070 0.930 36 H 0.100 0.900 37 H 0.049 0.951 38 H 0.076 0.924 39 H 0.083 0.917 40 H 0.400 0.600 41 H 0.070 0.930 42 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.787 -7.979 2.477 31.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.191 4.191 3 Si 0.719 3.281 4 H -0.210 1.210 5 H -0.218 1.218 6 H -0.203 1.203 7 C -0.378 4.378 8 H 0.108 0.892 9 N -0.396 5.396 10 C 0.002 3.998 11 C 0.026 3.974 12 H 0.122 0.878 13 O -0.363 6.363 14 C -0.033 4.033 15 N -0.375 5.375 16 C 0.294 3.706 17 O -0.398 6.398 18 C -0.097 4.097 19 N -0.241 5.241 20 C -0.096 4.096 21 C -0.008 4.008 22 N -0.375 5.375 23 C 0.316 3.684 24 O -0.428 6.428 25 C -0.097 4.097 26 H 0.070 0.930 27 H 0.200 0.800 28 H 0.050 0.950 29 H 0.055 0.945 30 H 0.224 0.776 31 H 0.092 0.908 32 H 0.098 0.902 33 H 0.238 0.762 34 H 0.130 0.870 35 H 0.088 0.912 36 H 0.118 0.882 37 H 0.067 0.933 38 H 0.095 0.905 39 H 0.101 0.899 40 H 0.236 0.764 41 H 0.088 0.912 42 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 29.982 -9.017 2.789 31.433 hybrid contribution 1.016 1.556 -0.790 2.019 sum 30.998 -7.461 1.999 31.946 Atomic orbital electron populations 1.69712 1.05133 1.25930 1.57250 1.24689 0.95263 0.97353 1.01806 0.86481 0.79065 0.84689 0.77851 1.21021 1.21806 1.20312 1.19043 0.80503 0.94790 1.43481 0.89246 1.42558 1.03943 1.01992 1.91087 1.21173 0.88513 0.90312 0.99801 1.22440 0.94728 0.90772 0.89504 0.87813 1.86532 1.85991 1.47790 1.15966 1.22084 0.79529 0.98363 1.03322 1.45893 1.07041 1.09619 1.74978 1.20397 0.88009 0.85363 0.76813 1.90719 1.79701 1.21204 1.48225 1.22060 0.92005 0.91506 1.04109 1.62148 1.10884 1.21613 1.29407 1.22573 0.87800 0.97068 1.02177 1.21475 0.99975 0.88991 0.90361 1.45539 1.34678 1.26900 1.30385 1.20084 0.80015 0.87803 0.80501 1.90785 1.70322 1.44748 1.36898 1.22528 1.03242 0.93706 0.90269 0.92997 0.80039 0.95008 0.94460 0.77567 0.90840 0.90156 0.76167 0.87028 0.91170 0.88170 0.93307 0.90543 0.89920 0.76381 0.91244 0.84849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.26 13.97 55.49 0.78 -28.48 16 2 C 0.00 0.14 5.50 -17.43 -0.10 0.05 16 3 Si 0.89 22.14 27.74 -169.99 -4.71 17.43 16 4 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 5 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 6 H -0.28 -6.50 6.52 56.52 0.37 -6.13 16 7 C -0.25 -7.00 10.47 -15.06 -0.16 -7.15 16 8 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 9 N -0.75 -17.40 5.30 -59.91 -0.32 -17.71 16 10 C 0.13 2.32 5.92 -4.04 -0.02 2.29 16 11 C 0.09 1.13 3.09 -26.73 -0.08 1.05 16 12 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 13 O -0.56 -7.50 13.03 -35.23 -0.46 -7.96 16 14 C 0.09 1.03 5.31 -4.04 -0.02 1.01 16 15 N -0.72 -6.66 5.50 -60.29 -0.33 -6.99 16 16 C 0.51 5.17 7.59 -10.99 -0.08 5.09 16 17 O -0.52 -7.57 14.39 5.56 0.08 -7.49 16 18 C 0.03 0.21 5.44 -4.98 -0.03 0.19 16 19 N -0.51 -3.90 4.45 -237.54 -1.06 -4.96 16 20 C 0.03 0.13 5.60 -3.67 -0.02 0.11 16 21 C 0.12 0.47 7.39 -4.31 -0.03 0.43 16 22 N -0.72 -5.18 5.52 -61.06 -0.34 -5.51 16 23 C 0.53 5.77 7.81 -11.67 -0.09 5.68 16 24 O -0.55 -8.32 17.82 5.56 0.10 -8.23 16 25 C 0.03 0.31 5.16 -5.19 -0.03 0.29 16 26 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 27 H 0.37 8.45 5.40 -40.82 -0.22 8.23 16 28 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.38 4.19 9.05 45.56 0.41 4.60 16 31 H 0.07 0.86 8.14 -51.92 -0.42 0.44 16 32 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 33 H 0.40 2.92 8.47 -40.82 -0.35 2.57 16 34 H 0.11 0.43 7.91 -51.93 -0.41 0.02 16 35 H 0.07 0.32 8.03 -51.93 -0.42 -0.10 16 36 H 0.10 0.20 7.90 -51.93 -0.41 -0.21 16 37 H 0.05 0.17 8.08 -51.93 -0.42 -0.24 16 38 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 39 H 0.08 0.11 8.14 -51.93 -0.42 -0.31 16 40 H 0.40 2.41 8.84 -40.82 -0.36 2.05 16 41 H 0.07 0.55 8.04 -51.92 -0.42 0.14 16 42 H 0.13 1.67 6.10 -51.93 -0.32 1.35 16 LS Contribution 348.92 15.07 5.26 5.26 Total: -1.00 -38.22 348.92 -7.12 -45.35 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: -5.46 Total: 10.28 kcal Atomic # 6 Polarization: 9.69 SS G_CDS: -0.66 Total: 9.03 kcal Atomic # 7 Polarization: -62.39 SS G_CDS: -1.27 Total: -63.66 kcal Atomic # 8 Polarization: -23.40 SS G_CDS: -0.28 Total: -23.68 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.71 Total: 17.43 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -38.22 -7.12 -45.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699055110.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.467 kcal (2) G-P(sol) polarization free energy of solvation -38.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds