Wall clock time and date at job start Fri Apr 10 2020 17:47:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42900 * 109.47228 * 2 1 4 4 C 1.52999 * 109.47139 * 119.99885 * 2 1 3 5 5 N 1.46504 * 109.47060 * 304.99588 * 4 2 1 6 6 C 1.34781 * 120.00297 * 179.97438 * 5 4 2 7 7 O 1.21279 * 119.99383 * 0.02562 * 6 5 4 8 8 C 1.50691 * 120.00082 * 180.02562 * 6 5 4 9 9 C 1.53001 * 109.47205 * 180.02562 * 8 6 5 10 10 C 1.50704 * 109.47364 * 180.02562 * 9 8 6 11 11 H 1.07998 * 119.99931 * 359.97438 * 10 9 8 12 12 C 1.37876 * 119.99767 * 179.97438 * 10 9 8 13 13 N 1.31519 * 119.99618 * 179.97438 * 12 10 9 14 14 Si 1.86796 * 120.00369 * 359.97438 * 12 10 9 15 15 H 1.48501 * 109.47150 * 90.00008 * 14 12 10 16 16 H 1.48501 * 109.47386 * 210.00090 * 14 12 10 17 17 H 1.48503 * 109.47195 * 330.00539 * 14 12 10 18 18 C 1.53004 * 109.47155 * 239.99623 * 2 1 3 19 19 N 1.46897 * 109.46924 * 184.12660 * 18 2 1 20 20 C 1.47016 * 110.99897 * 277.44528 * 19 18 2 21 21 C 1.53109 * 109.25405 * 177.60932 * 20 19 18 22 22 O 1.43010 * 109.25617 * 56.85321 * 21 20 19 23 23 C 1.43015 * 113.73774 * 301.32206 * 22 21 20 24 24 C 1.47014 * 110.99802 * 153.81428 * 19 18 2 25 25 H 1.09001 * 109.47168 * 185.39807 * 1 2 3 26 26 H 1.08999 * 109.46914 * 305.39476 * 1 2 3 27 27 H 1.09001 * 109.47150 * 65.39670 * 1 2 3 28 28 H 0.96699 * 113.99965 * 163.33572 * 3 2 1 29 29 H 1.08999 * 109.47723 * 64.99922 * 4 2 1 30 30 H 1.09002 * 109.47168 * 185.00286 * 4 2 1 31 31 H 0.96998 * 119.99887 * 0.02562 * 5 4 2 32 32 H 1.09001 * 109.47004 * 299.99538 * 8 6 5 33 33 H 1.08997 * 109.47766 * 59.99675 * 8 6 5 34 34 H 1.09006 * 109.46924 * 299.99376 * 9 8 6 35 35 H 1.08997 * 109.47299 * 59.99051 * 9 8 6 36 36 H 0.96994 * 120.00101 * 179.97438 * 13 12 10 37 37 H 1.09001 * 109.47141 * 304.12725 * 18 2 1 38 38 H 1.08996 * 109.47034 * 64.12674 * 18 2 1 39 39 H 1.08993 * 109.50542 * 297.54405 * 20 19 18 40 40 H 1.09000 * 109.50616 * 57.68261 * 20 19 18 41 41 H 1.09001 * 109.50674 * 296.91215 * 21 20 19 42 42 H 1.09003 * 109.53696 * 176.80914 * 21 20 19 43 43 H 1.08995 * 109.51134 * 298.73848 * 23 22 21 44 44 H 1.09005 * 109.54010 * 178.63370 * 23 22 21 45 45 H 1.09003 * 109.50783 * 302.31988 * 24 19 18 46 46 H 1.08997 * 109.50752 * 62.41121 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 1.4559 -0.1035 2.4424 6 6 1.7640 -0.5772 3.6660 7 8 2.5251 -1.5146 3.7793 8 6 1.1627 0.0578 4.8932 9 6 1.6728 -0.6633 6.1425 10 6 1.0710 -0.0286 7.3698 11 1 0.3929 0.8059 7.2689 12 6 1.3861 -0.5134 8.6215 13 7 0.8613 0.0408 9.6925 14 14 2.5584 -1.9572 8.7961 15 1 3.9503 -1.4533 8.9135 16 1 2.2090 -2.7342 10.0124 17 1 2.4478 -2.8319 7.6011 18 6 2.0400 -0.7213 -1.2492 19 7 3.5056 -0.8082 -1.2004 20 6 4.1234 0.4377 -1.6773 21 6 5.6454 0.3261 -1.5536 22 8 6.0956 -0.8165 -2.2863 23 6 5.5144 -2.0474 -1.8477 24 6 3.9911 -1.9599 -1.9744 25 1 -0.3633 -1.0231 0.0967 26 1 -0.3633 0.5952 0.8377 27 1 -0.3633 0.4279 -0.9344 28 1 2.9353 1.4360 0.2533 29 1 1.7517 -1.7715 1.2057 30 1 3.1263 -0.6443 1.2952 31 1 0.8468 0.6460 2.3517 32 1 1.4512 1.1080 4.9372 33 1 0.0764 -0.0190 4.8470 34 1 1.3846 -1.7137 6.0988 35 1 2.7590 -0.5862 6.1886 36 1 1.0827 -0.3004 10.5731 37 1 1.6175 -1.7255 -1.2869 38 1 1.7383 -0.1667 -2.1377 39 1 3.8540 0.6013 -2.7206 40 1 3.7696 1.2736 -1.0738 41 1 5.9182 0.2161 -0.5040 42 1 6.1109 1.2248 -1.9584 43 1 5.7834 -2.2265 -0.8068 44 1 5.8846 -2.8659 -2.4652 45 1 3.5408 -2.8742 -1.5879 46 1 3.7190 -1.8349 -3.0224 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360316503.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:47:39 Heat of formation + Delta-G solvation = -131.272994 kcal Electronic energy + Delta-G solvation = -25339.579872 eV Core-core repulsion = 21650.226567 eV Total energy + Delta-G solvation = -3689.353304 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 300.188 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.42919 -39.34499 -38.20956 -35.55939 -34.23079 -33.44346 -32.05987 -31.52601 -31.17093 -28.43444 -27.29445 -25.48444 -24.43548 -24.39613 -21.22511 -20.85349 -20.70443 -19.63845 -17.67234 -17.07042 -16.96501 -16.54963 -16.03954 -15.76350 -15.44240 -15.38531 -15.02859 -14.77691 -14.66613 -14.19646 -14.05066 -13.75860 -13.18405 -13.10678 -12.84338 -12.69375 -12.53712 -12.30971 -12.24959 -11.94010 -11.83876 -11.75214 -11.39150 -11.19574 -10.93689 -10.76678 -10.54674 -10.13306 -10.01804 -9.89444 -9.76204 -9.21191 -9.13946 -8.88974 -8.74470 -8.48814 -6.01290 -3.99813 3.17764 3.23063 3.39231 3.42763 3.45822 3.51261 3.56892 3.90048 4.39299 4.45662 4.51583 4.52612 4.53373 4.68558 4.76435 4.78106 4.92244 5.07803 5.13184 5.22652 5.26072 5.34242 5.37774 5.40475 5.43029 5.44823 5.54970 5.58500 5.75164 5.83974 5.96174 6.12426 6.13687 6.44290 6.45599 6.66456 6.73767 6.75167 7.29524 7.39240 7.46300 7.79420 7.84774 8.52570 8.71051 9.02153 9.61912 11.11625 Molecular weight = 300.19amu Principal moments of inertia in cm(-1) A = 0.020375 B = 0.002987 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.890542 B = 9371.870006 C =10120.410358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.129 3.871 3 O -0.557 6.557 4 C 0.104 3.896 5 N -0.740 5.740 6 C 0.509 3.491 7 O -0.542 6.542 8 C -0.122 4.122 9 C 0.002 3.998 10 C -0.524 4.524 11 H 0.072 0.928 12 C 0.068 3.932 13 N -0.904 5.904 14 Si 0.878 3.122 15 H -0.277 1.277 16 H -0.289 1.289 17 H -0.261 1.261 18 C 0.035 3.965 19 N -0.537 5.537 20 C 0.009 3.991 21 C 0.060 3.940 22 O -0.387 6.387 23 C 0.062 3.938 24 C 0.018 3.982 25 H 0.073 0.927 26 H 0.070 0.930 27 H 0.064 0.936 28 H 0.378 0.622 29 H 0.068 0.932 30 H 0.079 0.921 31 H 0.400 0.600 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.023 0.977 35 H 0.018 0.982 36 H 0.263 0.737 37 H 0.084 0.916 38 H 0.053 0.947 39 H 0.044 0.956 40 H 0.097 0.903 41 H 0.062 0.938 42 H 0.098 0.902 43 H 0.063 0.937 44 H 0.098 0.902 45 H 0.088 0.912 46 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.025 -0.238 -28.634 28.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.088 3.912 3 O -0.366 6.366 4 C -0.021 4.021 5 N -0.395 5.395 6 C 0.297 3.703 7 O -0.418 6.418 8 C -0.162 4.162 9 C -0.036 4.036 10 C -0.562 4.562 11 H 0.091 0.909 12 C -0.133 4.133 13 N -0.543 5.543 14 Si 0.705 3.295 15 H -0.202 1.202 16 H -0.215 1.215 17 H -0.185 1.185 18 C -0.094 4.094 19 N -0.262 5.262 20 C -0.119 4.119 21 C -0.017 4.017 22 O -0.305 6.305 23 C -0.015 4.015 24 C -0.110 4.110 25 H 0.092 0.908 26 H 0.089 0.911 27 H 0.083 0.917 28 H 0.229 0.771 29 H 0.086 0.914 30 H 0.097 0.903 31 H 0.235 0.765 32 H 0.103 0.897 33 H 0.103 0.897 34 H 0.041 0.959 35 H 0.037 0.963 36 H 0.073 0.927 37 H 0.102 0.898 38 H 0.072 0.928 39 H 0.062 0.938 40 H 0.115 0.885 41 H 0.080 0.920 42 H 0.116 0.884 43 H 0.081 0.919 44 H 0.116 0.884 45 H 0.106 0.894 46 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 4.256 -0.888 -28.198 28.531 hybrid contribution 0.356 -0.413 -0.346 0.646 sum 4.612 -1.301 -28.544 28.943 Atomic orbital electron populations 1.21784 0.92100 1.02935 1.03226 1.21448 0.94617 0.82208 0.92945 1.86565 1.32204 1.26335 1.91511 1.21822 0.99287 0.97302 0.83656 1.46200 1.50418 1.37207 1.05681 1.21514 0.80815 0.83233 0.84695 1.90650 1.35871 1.28515 1.86787 1.21657 1.01186 1.01060 0.92322 1.19361 0.96628 0.96154 0.91448 1.21128 1.28316 1.17423 0.89346 0.90948 1.24978 0.95809 0.96703 0.95800 1.69914 1.44534 1.41841 0.98042 0.86789 0.81513 0.83412 0.77800 1.20248 1.21467 1.18543 1.22773 0.87403 1.01438 0.97764 1.62204 1.06276 1.03278 1.54446 1.23117 0.95826 0.93133 0.99795 1.22723 0.92649 0.89131 0.97162 1.87984 1.67444 1.15356 1.59725 1.22679 0.91172 0.86833 1.00796 1.22823 0.97032 0.94634 0.96478 0.90798 0.91078 0.91738 0.77069 0.91370 0.90283 0.76530 0.89692 0.89704 0.95884 0.96316 0.92741 0.89767 0.92824 0.93757 0.88491 0.91982 0.88363 0.91896 0.88431 0.89386 0.93925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 8.52 37.16 0.32 -0.80 16 2 C 0.13 1.10 0.89 -90.62 -0.08 1.02 16 3 O -0.56 -4.98 11.88 -35.23 -0.42 -5.39 16 4 C 0.10 1.19 4.38 -4.04 -0.02 1.17 16 5 N -0.74 -9.80 5.21 -60.29 -0.31 -10.11 16 6 C 0.51 9.29 7.83 -10.99 -0.09 9.20 16 7 O -0.54 -12.08 15.98 5.56 0.09 -11.99 16 8 C -0.12 -2.39 5.64 -27.89 -0.16 -2.55 16 9 C 0.00 0.05 3.33 -27.88 -0.09 -0.04 16 10 C -0.52 -15.13 9.66 -34.44 -0.33 -15.46 16 11 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 12 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 13 N -0.90 -28.22 13.96 55.43 0.77 -27.44 16 14 Si 0.88 22.76 27.47 -169.99 -4.67 18.09 16 15 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 16 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 17 H -0.26 -6.75 6.54 56.52 0.37 -6.38 16 18 C 0.03 0.26 4.38 -3.82 -0.02 0.24 16 19 N -0.54 -4.24 3.78 -234.30 -0.88 -5.13 16 20 C 0.01 0.07 5.27 -3.70 -0.02 0.05 16 21 C 0.06 0.46 7.01 37.21 0.26 0.72 16 22 O -0.39 -3.69 10.83 -35.23 -0.38 -4.07 16 23 C 0.06 0.48 7.01 37.21 0.26 0.75 16 24 C 0.02 0.13 5.55 -3.71 -0.02 0.11 16 25 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.07 0.59 6.76 -51.93 -0.35 0.24 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.38 2.93 6.54 45.56 0.30 3.22 16 29 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.08 1.02 7.63 -51.93 -0.40 0.62 16 31 H 0.40 4.47 7.04 -40.82 -0.29 4.18 16 32 H 0.08 1.55 8.14 -51.93 -0.42 1.12 16 33 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 34 H 0.02 0.60 7.15 -51.93 -0.37 0.23 16 35 H 0.02 0.48 7.53 -51.93 -0.39 0.09 16 36 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 37 H 0.08 0.57 7.75 -51.93 -0.40 0.17 16 38 H 0.05 0.40 7.87 -51.93 -0.41 -0.01 16 39 H 0.04 0.35 8.11 -51.93 -0.42 -0.08 16 40 H 0.10 0.64 4.63 -51.93 -0.24 0.39 16 41 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 43 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.09 0.58 8.00 -51.93 -0.42 0.16 16 46 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 LS Contribution 361.53 15.07 5.45 5.45 Total: -1.00 -35.00 361.53 -7.64 -42.64 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: -7.20 Total: 1.61 kcal Atomic # 6 Polarization: -3.56 SS G_CDS: -0.08 Total: -3.64 kcal Atomic # 7 Polarization: -42.26 SS G_CDS: -0.43 Total: -42.68 kcal Atomic # 8 Polarization: -20.74 SS G_CDS: -0.71 Total: -21.45 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -4.67 Total: 18.09 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -35.00 -7.64 -42.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360316503.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.632 kcal (2) G-P(sol) polarization free energy of solvation -34.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds