Wall clock time and date at job start Fri Apr 10 2020 17:47:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46501 * 119.99486 * 2 1 4 4 C 1.50702 * 109.46939 * 269.99896 * 3 2 1 5 5 H 1.07996 * 120.00166 * 0.02562 * 4 3 2 6 6 C 1.37877 * 119.99763 * 180.02562 * 4 3 2 7 7 N 1.31514 * 120.00105 * 0.02562 * 6 4 3 8 8 Si 1.86798 * 119.99904 * 180.02562 * 6 4 3 9 9 H 1.48499 * 109.47082 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.46706 * 120.00146 * 8 6 4 11 11 H 1.48498 * 109.47446 * 240.00160 * 8 6 4 12 12 C 1.34774 * 119.99997 * 180.02562 * 2 1 3 13 13 O 1.21281 * 119.99662 * 179.97438 * 12 2 1 14 14 C 1.50697 * 120.00145 * 359.97438 * 12 2 1 15 15 C 1.53000 * 109.46944 * 179.97438 * 14 12 2 16 16 N 1.46903 * 109.47039 * 179.97438 * 15 14 12 17 17 C 1.46846 * 110.99717 * 66.04791 * 16 15 14 18 18 C 1.53036 * 109.52384 * 174.15896 * 17 16 15 19 19 C 1.53123 * 109.27788 * 59.18000 * 18 17 16 20 20 H 1.09000 * 109.52181 * 62.25097 * 19 18 17 21 21 O 1.42904 * 109.52469 * 182.44373 * 19 18 17 22 22 C 1.53124 * 109.15980 * 302.34618 * 19 18 17 23 23 H 1.08992 * 109.53604 * 297.69218 * 22 19 18 24 24 C 1.53003 * 109.50206 * 177.59165 * 22 19 18 25 25 O 1.42899 * 109.46682 * 175.19533 * 24 22 19 26 26 C 1.46842 * 111.00077 * 301.84090 * 16 15 14 27 27 H 1.09009 * 109.46695 * 269.99289 * 1 2 3 28 28 H 1.08995 * 109.47684 * 29.99734 * 1 2 3 29 29 H 1.09003 * 109.47110 * 150.00609 * 1 2 3 30 30 H 1.08990 * 109.47277 * 30.00442 * 3 2 1 31 31 H 1.09001 * 109.46862 * 150.00194 * 3 2 1 32 32 H 0.96997 * 120.00184 * 179.97438 * 7 6 4 33 33 H 1.08997 * 109.47370 * 60.00009 * 14 12 2 34 34 H 1.08997 * 109.47449 * 300.00129 * 14 12 2 35 35 H 1.09007 * 109.47167 * 60.00671 * 15 14 12 36 36 H 1.08994 * 109.47553 * 299.99939 * 15 14 12 37 37 H 1.08999 * 109.46089 * 54.14588 * 17 16 15 38 38 H 1.08998 * 109.46294 * 294.17617 * 17 16 15 39 39 H 1.09000 * 109.50632 * 179.12292 * 18 17 16 40 40 H 1.09006 * 109.50216 * 299.24086 * 18 17 16 41 41 H 0.96705 * 113.99565 * 299.99614 * 21 19 18 42 42 H 1.08991 * 109.47084 * 295.19796 * 24 22 19 43 43 H 1.09004 * 109.46794 * 55.19989 * 24 22 19 44 44 H 0.96708 * 113.99363 * 180.02562 * 25 24 22 45 45 H 1.09006 * 109.46447 * 305.84971 * 26 16 15 46 46 H 1.08994 * 109.46873 * 65.82005 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0974 1.0962 -2.2417 6 6 3.1267 2.8776 -1.6728 7 7 3.5548 3.6172 -0.6732 8 14 3.4374 3.4172 -3.4339 9 1 2.8585 2.4177 -4.3673 10 1 2.8002 4.7382 -3.6665 11 1 4.8998 3.5248 -3.6681 12 6 2.1389 -1.1672 -0.0005 13 8 3.3517 -1.1671 -0.0010 14 6 1.3855 -2.4723 -0.0005 15 6 2.3798 -3.6351 -0.0018 16 7 1.6453 -4.9074 -0.0012 17 6 0.8988 -5.0846 -1.2533 18 6 0.2665 -6.4780 -1.2789 19 6 -0.6713 -6.6297 -0.0779 20 1 -1.4768 -5.8990 -0.1502 21 8 -1.2210 -7.9487 -0.0649 22 6 0.1206 -6.3927 1.2111 23 1 0.9015 -7.1474 1.3031 24 6 -0.8215 -6.4832 2.4132 25 8 -0.0650 -6.3735 3.6205 26 6 0.7571 -5.0017 1.1644 27 1 -0.3633 -0.0001 1.0278 28 1 -0.3634 0.8899 -0.5137 29 1 -0.3633 -0.8901 -0.5138 30 1 1.6084 2.0283 0.5138 31 1 3.1499 1.1385 0.5138 32 1 4.0322 4.4428 -0.8504 33 1 0.7585 -2.5299 -0.8902 34 1 0.7591 -2.5303 0.8896 35 1 3.0071 -3.5778 0.8878 36 1 3.0057 -3.5770 -0.8922 37 1 1.5780 -4.9785 -2.0991 38 1 0.1158 -4.3292 -1.3194 39 1 -0.3004 -6.6035 -2.2014 40 1 1.0499 -7.2342 -1.2267 41 1 -1.7325 -8.1694 -0.8553 42 1 -1.5498 -5.6737 2.3659 43 1 -1.3414 -7.4411 2.3961 44 1 -0.5991 -6.4231 4.4252 45 1 1.3334 -4.8354 2.0746 46 1 -0.0252 -4.2468 1.0870 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396886125.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:47:54 Heat of formation + Delta-G solvation = -168.165480 kcal Electronic energy + Delta-G solvation = -25398.578147 eV Core-core repulsion = 21707.625065 eV Total energy + Delta-G solvation = -3690.953083 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 300.188 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.13883 -40.29415 -37.82578 -37.40997 -36.60435 -34.77814 -33.99408 -32.44426 -31.02981 -29.40681 -27.35915 -26.77305 -25.99849 -24.60128 -23.33548 -22.15441 -20.89039 -19.81031 -18.72517 -18.35595 -18.23001 -17.95923 -17.14989 -16.82996 -16.43217 -16.34730 -16.13330 -15.55795 -15.26070 -15.03213 -14.82871 -14.50857 -14.25311 -14.02909 -13.84312 -13.67180 -13.50034 -13.45574 -13.32845 -13.04731 -12.82873 -12.78045 -12.51743 -12.38882 -12.27436 -12.22755 -11.87852 -11.71337 -11.65037 -11.32056 -10.87120 -10.72429 -10.67020 -10.63371 -9.44137 -9.30703 -8.24303 -6.39634 1.35211 1.37951 1.49604 1.81228 2.29373 2.43172 2.85797 3.05223 3.22083 3.32868 3.74606 3.79602 3.91952 3.94034 4.02940 4.07025 4.18232 4.28449 4.30529 4.41724 4.50638 4.54100 4.59056 4.67591 4.70904 4.79268 4.81823 4.91796 4.93723 4.97827 5.00957 5.05632 5.13734 5.16456 5.21084 5.36095 5.54126 5.81965 6.00727 6.03946 6.13357 6.67640 6.77000 6.91618 6.94619 7.26324 7.46519 8.83108 Molecular weight = 300.19amu Principal moments of inertia in cm(-1) A = 0.024922 B = 0.002979 C = 0.002837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1123.235926 B = 9397.779297 C = 9866.422602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.612 5.612 3 C 0.258 3.742 4 C -0.543 4.543 5 H 0.054 0.946 6 C 0.006 3.994 7 N -0.929 5.929 8 Si 0.970 3.030 9 H -0.266 1.266 10 H -0.268 1.268 11 H -0.282 1.282 12 C 0.496 3.504 13 O -0.598 6.598 14 C -0.155 4.155 15 C 0.082 3.918 16 N -0.542 5.542 17 C 0.046 3.954 18 C -0.140 4.140 19 C 0.116 3.884 20 H 0.072 0.928 21 O -0.579 6.579 22 C -0.076 4.076 23 H 0.065 0.935 24 C 0.086 3.914 25 O -0.594 6.594 26 C 0.064 3.936 27 H 0.069 0.931 28 H 0.066 0.934 29 H 0.093 0.907 30 H 0.023 0.977 31 H -0.004 1.004 32 H 0.267 0.733 33 H 0.111 0.889 34 H 0.112 0.888 35 H 0.065 0.935 36 H 0.068 0.932 37 H 0.077 0.923 38 H 0.051 0.949 39 H 0.097 0.903 40 H 0.065 0.935 41 H 0.396 0.604 42 H 0.059 0.941 43 H 0.057 0.943 44 H 0.396 0.604 45 H 0.071 0.929 46 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.815 -21.800 1.414 27.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.344 5.344 3 C 0.136 3.864 4 C -0.581 4.581 5 H 0.072 0.928 6 C -0.193 4.193 7 N -0.569 5.569 8 Si 0.794 3.206 9 H -0.190 1.190 10 H -0.193 1.193 11 H -0.208 1.208 12 C 0.285 3.715 13 O -0.479 6.479 14 C -0.196 4.196 15 C -0.047 4.047 16 N -0.265 5.265 17 C -0.082 4.082 18 C -0.178 4.178 19 C 0.057 3.943 20 H 0.090 0.910 21 O -0.388 6.388 22 C -0.096 4.096 23 H 0.084 0.916 24 C 0.008 3.992 25 O -0.403 6.403 26 C -0.063 4.063 27 H 0.088 0.912 28 H 0.085 0.915 29 H 0.111 0.889 30 H 0.041 0.959 31 H 0.014 0.986 32 H 0.076 0.924 33 H 0.129 0.871 34 H 0.130 0.870 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.095 0.905 38 H 0.069 0.931 39 H 0.115 0.885 40 H 0.083 0.917 41 H 0.247 0.753 42 H 0.077 0.923 43 H 0.075 0.925 44 H 0.246 0.754 45 H 0.089 0.911 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -15.008 -21.987 1.644 26.672 hybrid contribution -0.503 1.449 -0.773 1.718 sum -15.512 -20.538 0.870 25.753 Atomic orbital electron populations 1.21917 0.77905 1.03949 1.02499 1.48232 1.08428 1.06471 1.71231 1.18754 0.91060 0.80488 0.96084 1.21732 1.36837 1.06561 0.92991 0.92794 1.25901 0.94868 0.96430 1.02135 1.70060 1.38897 1.14881 1.33082 0.85331 0.77883 0.78432 0.78934 1.18979 1.19336 1.20786 1.21285 0.87814 0.86528 0.75879 1.90643 1.16657 1.88182 1.52443 1.22289 1.00450 0.91256 1.05627 1.21753 0.94960 0.85017 1.02940 1.62210 1.29057 1.31943 1.03311 1.22205 0.97015 0.97143 0.91808 1.22261 0.99634 0.96729 0.99163 1.21717 0.94385 0.84743 0.93446 0.91004 1.86483 1.72812 1.32088 1.47413 1.21113 0.97612 0.97257 0.93577 0.91642 1.22122 0.92710 1.00667 0.83658 1.86461 1.39877 1.96922 1.16994 1.22069 0.95108 0.95750 0.93412 0.91237 0.91531 0.88890 0.95929 0.98586 0.92368 0.87064 0.87026 0.91685 0.91345 0.90499 0.93052 0.88453 0.91653 0.75332 0.92308 0.92467 0.75388 0.91090 0.92989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.31 10.24 127.77 1.31 3.62 16 2 N -0.61 -26.09 2.86 -851.12 -2.43 -28.53 16 3 C 0.26 14.14 5.16 85.63 0.44 14.59 16 4 C -0.54 -31.62 9.39 25.60 0.24 -31.38 16 5 H 0.05 3.10 7.81 -2.91 -0.02 3.08 16 6 C 0.01 0.32 5.46 84.65 0.46 0.78 16 7 N -0.93 -56.84 13.29 21.45 0.28 -56.56 16 8 Si 0.97 45.11 29.54 68.60 2.03 47.13 16 9 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 10 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 11 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 12 C 0.50 20.67 7.67 87.66 0.67 21.35 16 13 O -0.60 -31.44 15.56 -3.03 -0.05 -31.49 16 14 C -0.15 -4.21 3.55 29.85 0.11 -4.11 16 15 C 0.08 2.33 4.65 86.30 0.40 2.73 16 16 N -0.54 -12.33 4.86 -896.37 -4.35 -16.69 16 17 C 0.05 0.81 5.05 86.33 0.44 1.24 16 18 C -0.14 -1.92 5.72 30.65 0.18 -1.74 16 19 C 0.12 1.57 2.95 30.68 0.09 1.66 16 20 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 21 O -0.58 -7.55 12.68 -148.98 -1.89 -9.44 16 22 C -0.08 -1.40 2.32 -10.74 -0.02 -1.43 16 23 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 24 C 0.09 1.34 6.37 71.98 0.46 1.80 16 25 O -0.59 -10.52 13.21 -148.98 -1.97 -12.49 16 26 C 0.06 1.31 4.00 86.33 0.35 1.65 16 27 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 28 H 0.07 2.04 8.07 -2.39 -0.02 2.03 16 29 H 0.09 1.98 6.44 -2.39 -0.02 1.97 16 30 H 0.02 1.26 8.07 -2.39 -0.02 1.24 16 31 H 0.00 -0.25 7.42 -2.39 -0.02 -0.27 16 32 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 33 H 0.11 2.49 5.94 -2.39 -0.01 2.48 16 34 H 0.11 2.50 6.47 -2.39 -0.02 2.49 16 35 H 0.06 2.10 8.10 -2.38 -0.02 2.08 16 36 H 0.07 2.17 8.02 -2.39 -0.02 2.15 16 37 H 0.08 1.43 8.06 -2.39 -0.02 1.41 16 38 H 0.05 0.78 6.75 -2.39 -0.02 0.76 16 39 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 41 H 0.40 1.67 9.08 -74.05 -0.67 1.00 16 42 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 43 H 0.06 0.87 7.63 -2.38 -0.02 0.85 16 44 H 0.40 3.29 9.12 -74.05 -0.68 2.61 16 45 H 0.07 1.72 7.83 -2.38 -0.02 1.70 16 46 H 0.05 0.90 6.61 -2.39 -0.02 0.88 16 Total: -1.00 -80.73 364.43 -3.63 -84.37 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: -0.36 Total: 12.94 kcal Atomic # 6 Polarization: 5.65 SS G_CDS: 5.11 Total: 10.76 kcal Atomic # 7 Polarization: -95.27 SS G_CDS: -6.50 Total: -101.77 kcal Atomic # 8 Polarization: -49.52 SS G_CDS: -3.91 Total: -53.42 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.13 kcal Total: -80.73 -3.63 -84.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396886125.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.799 kcal (2) G-P(sol) polarization free energy of solvation -80.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds