Wall clock time and date at job start Fri Apr 10 2020 17:48:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42894 * 113.99864 * 2 1 4 4 C 1.53009 * 109.46896 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47169 * 180.02562 * 4 3 2 6 6 N 1.46493 * 109.47228 * 180.02562 * 5 4 3 7 7 C 1.46504 * 119.99817 * 269.99728 * 6 5 4 8 8 C 1.53000 * 109.47365 * 264.41509 * 7 6 5 9 9 O 1.42896 * 109.47060 * 62.92468 * 8 7 6 10 10 C 1.34779 * 120.00492 * 89.99990 * 6 5 4 11 11 O 1.21588 * 119.99672 * 5.37951 * 10 6 5 12 12 N 1.34767 * 120.00438 * 185.39145 * 10 6 5 13 13 C 1.46499 * 120.00246 * 175.81668 * 12 10 6 14 14 C 1.53000 * 109.47215 * 184.87023 * 13 12 10 15 15 C 1.50696 * 115.55352 * 304.84903 * 14 13 12 16 16 H 1.07999 * 120.00562 * 144.50790 * 15 14 13 17 17 C 1.37885 * 119.99680 * 324.49989 * 15 14 13 18 18 N 1.31519 * 119.99720 * 167.53291 * 17 15 14 19 19 Si 1.86793 * 119.99968 * 347.53691 * 17 15 14 20 20 H 1.48500 * 109.46930 * 95.74015 * 19 17 15 21 21 H 1.48505 * 109.47094 * 215.73433 * 19 17 15 22 22 H 1.48498 * 109.47516 * 335.73479 * 19 17 15 23 23 C 1.53004 * 117.49835 * 159.17211 * 14 13 12 24 24 C 1.53000 * 117.49631 * 90.51746 * 14 13 12 25 25 H 1.08997 * 109.47519 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47180 * 299.99795 * 1 2 3 27 27 H 1.09005 * 109.47214 * 59.99730 * 1 2 3 28 28 H 1.09001 * 109.47154 * 60.00491 * 3 2 1 29 29 H 1.08994 * 109.47626 * 300.00105 * 3 2 1 30 30 H 1.08993 * 109.47113 * 59.99873 * 4 3 2 31 31 H 1.09002 * 109.46727 * 300.00098 * 4 3 2 32 32 H 1.09004 * 109.47185 * 59.99516 * 5 4 3 33 33 H 1.08998 * 109.46982 * 300.00249 * 5 4 3 34 34 H 1.09003 * 109.47196 * 24.41749 * 7 6 5 35 35 H 1.09006 * 109.47223 * 144.41551 * 7 6 5 36 36 H 1.08996 * 109.46852 * 182.92807 * 8 7 6 37 37 H 1.09002 * 109.46861 * 302.92615 * 8 7 6 38 38 H 0.96697 * 113.99723 * 180.02562 * 9 8 7 39 39 H 0.97005 * 119.99822 * 355.53814 * 12 10 6 40 40 H 1.08993 * 109.47004 * 304.87443 * 13 12 10 41 41 H 1.09002 * 109.47078 * 64.87510 * 13 12 10 42 42 H 0.96997 * 119.99921 * 180.02562 * 18 17 15 43 43 H 1.09001 * 117.49731 * 0.02562 * 23 14 13 44 44 H 1.08999 * 117.49741 * 145.02107 * 23 14 13 45 45 H 1.09001 * 117.50150 * 214.98209 * 24 14 13 46 46 H 1.09003 * 117.50189 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1578 2.5823 0.0000 6 7 5.6182 2.4666 -0.0012 7 6 6.3494 2.4078 1.2669 8 6 6.8385 3.8089 1.6392 9 8 5.7143 4.6673 1.8426 10 6 6.2892 2.4143 -1.1690 11 8 5.6941 2.5612 -2.2191 12 7 7.6195 2.1989 -1.1727 13 6 8.3340 2.0507 -2.4431 14 6 9.7968 1.6970 -2.1673 15 6 10.5378 2.6517 -1.2671 16 1 11.2794 2.2777 -0.5768 17 6 10.2691 4.0028 -1.3249 18 7 10.7238 4.8044 -0.3866 19 14 9.2591 4.6947 -2.7357 20 1 7.8381 4.8062 -2.3191 21 1 9.7746 6.0387 -3.1011 22 1 9.3616 3.7896 -3.9085 23 6 10.5876 1.0319 -3.2956 24 6 10.1595 0.2134 -2.0750 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.6886 1.8463 0.8900 29 1 1.6886 1.8464 -0.8899 30 1 3.8567 0.6438 -0.8908 31 1 3.8574 0.6435 0.8891 32 1 3.8365 3.1227 0.8904 33 1 3.8358 3.1237 -0.8895 34 1 5.6897 2.0333 2.0497 35 1 7.2048 1.7402 1.1626 36 1 7.4266 3.7569 2.5554 37 1 7.4562 4.2042 0.8328 38 1 5.9502 5.5741 2.0817 39 1 8.1047 2.1461 -0.3344 40 1 7.8722 1.2561 -3.0290 41 1 8.2853 2.9872 -2.9988 42 1 10.5345 5.7549 -0.4270 43 1 10.0659 0.8467 -4.2346 44 1 11.6440 1.2847 -3.3867 45 1 10.9343 -0.0720 -1.3635 46 1 9.3560 -0.5106 -2.2104 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431198086.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:48:39 Heat of formation + Delta-G solvation = -86.291731 kcal Electronic energy + Delta-G solvation = -26019.743515 eV Core-core repulsion = 22332.340744 eV Total energy + Delta-G solvation = -3687.402770 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 300.188 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.91119 -38.08089 -37.33976 -36.73376 -35.15455 -33.65511 -32.33508 -32.12521 -28.97444 -27.50252 -26.60571 -25.36403 -24.24861 -22.78931 -21.72499 -21.43655 -19.49495 -19.03299 -17.98418 -17.01492 -16.78825 -16.41453 -16.18046 -15.98925 -15.59796 -15.16378 -14.82460 -14.32074 -14.23063 -13.88282 -13.65208 -13.50511 -12.95201 -12.88265 -12.69999 -12.29225 -12.13229 -12.06642 -12.02825 -11.80741 -11.27938 -11.13792 -11.00958 -10.69840 -10.65761 -10.50328 -9.96553 -9.89621 -9.80285 -9.69576 -9.45564 -9.34313 -8.99235 -8.48548 -8.45537 -7.95342 -6.30235 -4.24767 3.01173 3.30292 3.37605 3.42132 3.60777 3.80577 4.30581 4.37283 4.39849 4.78143 4.93682 4.98603 5.14247 5.19037 5.23376 5.27400 5.29738 5.33500 5.42433 5.47899 5.55514 5.57616 5.65971 5.75638 5.83534 5.90733 6.04146 6.11223 6.15934 6.25145 6.29210 6.46333 6.49909 6.64937 6.79764 6.87762 7.02595 7.08661 7.25609 7.41325 7.60204 7.73443 8.34423 8.55627 8.75876 9.15501 9.35501 10.80043 Molecular weight = 300.19amu Principal moments of inertia in cm(-1) A = 0.016401 B = 0.004504 C = 0.003995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.797562 B = 6215.667266 C = 7006.796658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.393 6.393 3 C 0.066 3.934 4 C -0.135 4.135 5 C 0.144 3.856 6 N -0.623 5.623 7 C 0.114 3.886 8 C 0.052 3.948 9 O -0.572 6.572 10 C 0.702 3.298 11 O -0.602 6.602 12 N -0.720 5.720 13 C 0.158 3.842 14 C -0.008 4.008 15 C -0.490 4.490 16 H 0.080 0.920 17 C 0.086 3.914 18 N -0.885 5.885 19 Si 0.883 3.117 20 H -0.274 1.274 21 H -0.301 1.301 22 H -0.263 1.263 23 C -0.199 4.199 24 C -0.186 4.186 25 H 0.084 0.916 26 H 0.040 0.960 27 H 0.040 0.960 28 H 0.049 0.951 29 H 0.051 0.949 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.057 0.943 37 H 0.060 0.940 38 H 0.377 0.623 39 H 0.406 0.594 40 H 0.053 0.947 41 H 0.056 0.944 42 H 0.266 0.734 43 H 0.070 0.930 44 H 0.088 0.912 45 H 0.083 0.917 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.847 -4.470 5.530 15.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.312 6.312 3 C -0.011 4.011 4 C -0.174 4.174 5 C 0.020 3.980 6 N -0.360 5.360 7 C -0.010 4.010 8 C -0.027 4.027 9 O -0.377 6.377 10 C 0.403 3.597 11 O -0.482 6.482 12 N -0.375 5.375 13 C 0.035 3.965 14 C -0.009 4.009 15 C -0.526 4.526 16 H 0.098 0.902 17 C -0.118 4.118 18 N -0.520 5.520 19 Si 0.715 3.285 20 H -0.200 1.200 21 H -0.230 1.230 22 H -0.189 1.189 23 C -0.238 4.238 24 C -0.224 4.224 25 H 0.102 0.898 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.093 0.907 31 H 0.088 0.912 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.104 0.896 35 H 0.109 0.891 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.223 0.777 39 H 0.244 0.756 40 H 0.072 0.928 41 H 0.074 0.926 42 H 0.075 0.925 43 H 0.088 0.912 44 H 0.106 0.894 45 H 0.102 0.898 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -14.447 -4.898 4.691 15.959 hybrid contribution -0.013 1.194 -0.210 1.212 sum -14.460 -3.704 4.481 15.585 Atomic orbital electron populations 1.22721 0.81278 1.02568 0.99898 1.87883 1.19504 1.28362 1.95421 1.22442 0.94052 0.84425 1.00205 1.21952 0.92718 0.99117 1.03645 1.21036 0.78490 0.95057 1.03433 1.46880 1.06335 1.78482 1.04294 1.21576 0.97588 0.95507 0.86331 1.22766 0.88215 0.91277 1.00448 1.86394 1.33684 1.24666 1.92989 1.15964 0.82178 0.77939 0.83582 1.90842 1.68519 1.58419 1.30376 1.45222 1.05473 1.75917 1.10908 1.21133 0.91138 1.00072 0.84185 1.19544 0.90704 0.92383 0.98257 1.20320 1.22314 0.89988 1.19991 0.90195 1.24912 0.95011 0.96860 0.94998 1.69931 1.45660 1.04781 1.31677 0.87020 0.80305 0.77088 0.84098 1.20033 1.22969 1.18860 1.23096 1.01020 1.07377 0.92302 1.22825 1.02893 0.95098 1.01561 0.89796 0.94181 0.94121 0.93253 0.93090 0.90743 0.91247 0.90054 0.90067 0.89632 0.89092 0.92472 0.92206 0.77686 0.75643 0.92838 0.92629 0.92451 0.91175 0.89360 0.89821 0.90864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 101.05 1.11 1.39 16 2 O -0.39 -4.92 10.70 -35.23 -0.38 -5.29 16 3 C 0.07 0.76 5.94 37.16 0.22 0.98 16 4 C -0.14 -1.79 5.91 -26.73 -0.16 -1.95 16 5 C 0.14 2.08 5.29 -4.05 -0.02 2.06 16 6 N -0.62 -10.36 2.40 -179.42 -0.43 -10.79 16 7 C 0.11 1.58 5.53 -4.04 -0.02 1.56 16 8 C 0.05 0.75 7.36 37.16 0.27 1.02 16 9 O -0.57 -7.77 13.00 -35.23 -0.46 -8.23 16 10 C 0.70 14.58 8.23 -86.92 -0.72 13.87 16 11 O -0.60 -14.46 15.90 5.29 0.08 -14.38 16 12 N -0.72 -15.00 4.88 -65.23 -0.32 -15.32 16 13 C 0.16 3.55 4.35 -4.04 -0.02 3.53 16 14 C -0.01 -0.17 1.45 -155.66 -0.23 -0.39 16 15 C -0.49 -12.55 8.84 -34.44 -0.30 -12.85 16 16 H 0.08 2.21 8.06 -52.49 -0.42 1.79 16 17 C 0.09 2.30 5.37 -17.81 -0.10 2.20 16 18 N -0.88 -24.54 13.96 55.43 0.77 -23.76 16 19 Si 0.88 22.14 23.94 -169.99 -4.07 18.07 16 20 H -0.27 -7.15 7.11 56.52 0.40 -6.75 16 21 H -0.30 -7.63 7.11 56.52 0.40 -7.23 16 22 H -0.26 -6.46 6.40 56.52 0.36 -6.10 16 23 C -0.20 -4.06 9.96 -26.69 -0.27 -4.33 16 24 C -0.19 -3.62 9.93 -26.70 -0.27 -3.88 16 25 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 26 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 27 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.08 1.05 7.62 -51.93 -0.40 0.65 16 33 H 0.08 1.32 7.35 -51.93 -0.38 0.93 16 34 H 0.09 0.98 8.03 -51.93 -0.42 0.57 16 35 H 0.09 1.22 6.52 -51.93 -0.34 0.88 16 36 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.38 3.77 9.12 45.56 0.42 4.19 16 39 H 0.41 8.08 5.76 -40.82 -0.24 7.85 16 40 H 0.05 1.15 8.09 -51.93 -0.42 0.73 16 41 H 0.06 1.38 2.58 -51.93 -0.13 1.24 16 42 H 0.27 7.04 8.31 -40.82 -0.34 6.71 16 43 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 44 H 0.09 1.80 8.14 -51.93 -0.42 1.38 16 45 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 46 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 LS Contribution 371.85 15.07 5.60 5.60 Total: -1.00 -32.12 371.85 -6.68 -38.80 By element: Atomic # 1 Polarization: 19.10 SS G_CDS: -7.00 Total: 12.10 kcal Atomic # 6 Polarization: 3.69 SS G_CDS: -0.48 Total: 3.20 kcal Atomic # 7 Polarization: -49.89 SS G_CDS: 0.02 Total: -49.87 kcal Atomic # 8 Polarization: -27.15 SS G_CDS: -0.75 Total: -27.90 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.07 Total: 18.07 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.12 -6.68 -38.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431198086.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.495 kcal (2) G-P(sol) polarization free energy of solvation -32.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds