Wall clock time and date at job start Fri Apr 10 2020 17:48:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42894 * 113.99864 * 2 1 4 4 C 1.53009 * 109.46896 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47169 * 180.02562 * 4 3 2 6 6 N 1.46493 * 109.47228 * 180.02562 * 5 4 3 7 7 C 1.46504 * 119.99817 * 269.99728 * 6 5 4 8 8 C 1.53000 * 109.47365 * 264.41509 * 7 6 5 9 9 O 1.42896 * 109.47060 * 62.92468 * 8 7 6 10 10 C 1.34779 * 120.00492 * 89.99990 * 6 5 4 11 11 O 1.21588 * 119.99672 * 5.37951 * 10 6 5 12 12 N 1.34767 * 120.00438 * 185.39145 * 10 6 5 13 13 C 1.46499 * 120.00246 * 175.81668 * 12 10 6 14 14 C 1.53000 * 109.47215 * 184.87023 * 13 12 10 15 15 C 1.50696 * 115.55352 * 304.84903 * 14 13 12 16 16 H 1.07999 * 120.00562 * 144.50790 * 15 14 13 17 17 C 1.37885 * 119.99680 * 324.49989 * 15 14 13 18 18 N 1.31519 * 119.99720 * 167.53291 * 17 15 14 19 19 Si 1.86793 * 119.99968 * 347.53691 * 17 15 14 20 20 H 1.48500 * 109.46930 * 95.74015 * 19 17 15 21 21 H 1.48505 * 109.47094 * 215.73433 * 19 17 15 22 22 H 1.48498 * 109.47516 * 335.73479 * 19 17 15 23 23 C 1.53004 * 117.49835 * 159.17211 * 14 13 12 24 24 C 1.53000 * 117.49631 * 90.51746 * 14 13 12 25 25 H 1.08997 * 109.47519 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47180 * 299.99795 * 1 2 3 27 27 H 1.09005 * 109.47214 * 59.99730 * 1 2 3 28 28 H 1.09001 * 109.47154 * 60.00491 * 3 2 1 29 29 H 1.08994 * 109.47626 * 300.00105 * 3 2 1 30 30 H 1.08993 * 109.47113 * 59.99873 * 4 3 2 31 31 H 1.09002 * 109.46727 * 300.00098 * 4 3 2 32 32 H 1.09004 * 109.47185 * 59.99516 * 5 4 3 33 33 H 1.08998 * 109.46982 * 300.00249 * 5 4 3 34 34 H 1.09003 * 109.47196 * 24.41749 * 7 6 5 35 35 H 1.09006 * 109.47223 * 144.41551 * 7 6 5 36 36 H 1.08996 * 109.46852 * 182.92807 * 8 7 6 37 37 H 1.09002 * 109.46861 * 302.92615 * 8 7 6 38 38 H 0.96697 * 113.99723 * 180.02562 * 9 8 7 39 39 H 0.97005 * 119.99822 * 355.53814 * 12 10 6 40 40 H 1.08993 * 109.47004 * 304.87443 * 13 12 10 41 41 H 1.09002 * 109.47078 * 64.87510 * 13 12 10 42 42 H 0.96997 * 119.99921 * 180.02562 * 18 17 15 43 43 H 1.09001 * 117.49731 * 0.02562 * 23 14 13 44 44 H 1.08999 * 117.49741 * 145.02107 * 23 14 13 45 45 H 1.09001 * 117.50150 * 214.98209 * 24 14 13 46 46 H 1.09003 * 117.50189 * 359.97438 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1578 2.5823 0.0000 6 7 5.6182 2.4666 -0.0012 7 6 6.3494 2.4078 1.2669 8 6 6.8385 3.8089 1.6392 9 8 5.7143 4.6673 1.8426 10 6 6.2892 2.4143 -1.1690 11 8 5.6941 2.5612 -2.2191 12 7 7.6195 2.1989 -1.1727 13 6 8.3340 2.0507 -2.4431 14 6 9.7968 1.6970 -2.1673 15 6 10.5378 2.6517 -1.2671 16 1 11.2794 2.2777 -0.5768 17 6 10.2691 4.0028 -1.3249 18 7 10.7238 4.8044 -0.3866 19 14 9.2591 4.6947 -2.7357 20 1 7.8381 4.8062 -2.3191 21 1 9.7746 6.0387 -3.1011 22 1 9.3616 3.7896 -3.9085 23 6 10.5876 1.0319 -3.2956 24 6 10.1595 0.2134 -2.0750 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.6886 1.8463 0.8900 29 1 1.6886 1.8464 -0.8899 30 1 3.8567 0.6438 -0.8908 31 1 3.8574 0.6435 0.8891 32 1 3.8365 3.1227 0.8904 33 1 3.8358 3.1237 -0.8895 34 1 5.6897 2.0333 2.0497 35 1 7.2048 1.7402 1.1626 36 1 7.4266 3.7569 2.5554 37 1 7.4562 4.2042 0.8328 38 1 5.9502 5.5741 2.0817 39 1 8.1047 2.1461 -0.3344 40 1 7.8722 1.2561 -3.0290 41 1 8.2853 2.9872 -2.9988 42 1 10.5345 5.7549 -0.4270 43 1 10.0659 0.8467 -4.2346 44 1 11.6440 1.2847 -3.3867 45 1 10.9343 -0.0720 -1.3635 46 1 9.3560 -0.5106 -2.2104 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000431198086.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:48:38 Heat of formation + Delta-G solvation = -110.803704 kcal Electronic energy + Delta-G solvation = -26020.806434 eV Core-core repulsion = 22332.340744 eV Total energy + Delta-G solvation = -3688.465689 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 300.188 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.42990 -39.13479 -38.78306 -38.04441 -36.43690 -35.23030 -34.35415 -33.33057 -30.13813 -28.97442 -27.79884 -27.00691 -25.45974 -24.03225 -23.11085 -22.74894 -21.27202 -20.59068 -19.41729 -18.42327 -18.12498 -17.75118 -17.57243 -17.07882 -17.02882 -16.61360 -15.91557 -15.74642 -15.66174 -15.20134 -15.09587 -14.92127 -14.70910 -14.23743 -14.19109 -13.86324 -13.67775 -13.17974 -13.07038 -12.98295 -12.67739 -12.55315 -12.36637 -12.14391 -12.04752 -11.85135 -11.78432 -11.52911 -11.32951 -11.18816 -10.95285 -10.75622 -10.62877 -10.40312 -10.04227 -9.47464 -8.38966 -6.31259 1.26472 1.34630 1.37518 1.64348 2.09304 2.25130 2.73340 2.87183 3.07424 3.34053 3.48799 3.90734 3.96740 4.08226 4.12061 4.17784 4.19965 4.31648 4.38832 4.45342 4.46499 4.48984 4.50270 4.54857 4.56676 4.65974 4.72232 4.77560 4.84473 4.86019 4.93353 4.95378 5.06012 5.17510 5.22193 5.50190 5.55192 5.60682 5.67769 5.95449 6.22631 6.29872 6.67620 6.79450 7.01298 7.29222 7.55470 8.74933 Molecular weight = 300.19amu Principal moments of inertia in cm(-1) A = 0.016401 B = 0.004504 C = 0.003995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.797562 B = 6215.667266 C = 7006.796658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.419 6.419 3 C 0.069 3.931 4 C -0.124 4.124 5 C 0.145 3.855 6 N -0.617 5.617 7 C 0.110 3.890 8 C 0.059 3.941 9 O -0.578 6.578 10 C 0.695 3.305 11 O -0.641 6.641 12 N -0.718 5.718 13 C 0.163 3.837 14 C -0.036 4.036 15 C -0.477 4.477 16 H 0.056 0.944 17 C 0.059 3.941 18 N -0.917 5.917 19 Si 0.926 3.074 20 H -0.296 1.296 21 H -0.308 1.308 22 H -0.256 1.256 23 C -0.192 4.192 24 C -0.159 4.159 25 H 0.096 0.904 26 H 0.055 0.945 27 H 0.046 0.954 28 H 0.073 0.927 29 H 0.049 0.951 30 H 0.044 0.956 31 H 0.080 0.920 32 H 0.105 0.895 33 H 0.059 0.941 34 H 0.119 0.881 35 H 0.094 0.906 36 H 0.079 0.921 37 H 0.016 0.984 38 H 0.392 0.608 39 H 0.409 0.591 40 H 0.062 0.938 41 H 0.031 0.969 42 H 0.266 0.734 43 H 0.088 0.912 44 H 0.086 0.914 45 H 0.088 0.912 46 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.986 -5.842 6.417 17.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.339 6.339 3 C -0.008 4.008 4 C -0.163 4.163 5 C 0.022 3.978 6 N -0.353 5.353 7 C -0.013 4.013 8 C -0.021 4.021 9 O -0.385 6.385 10 C 0.397 3.603 11 O -0.524 6.524 12 N -0.374 5.374 13 C 0.039 3.961 14 C -0.038 4.038 15 C -0.515 4.515 16 H 0.074 0.926 17 C -0.142 4.142 18 N -0.555 5.555 19 Si 0.759 3.241 20 H -0.223 1.223 21 H -0.237 1.237 22 H -0.181 1.181 23 C -0.231 4.231 24 C -0.197 4.197 25 H 0.114 0.886 26 H 0.074 0.926 27 H 0.064 0.936 28 H 0.091 0.909 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.098 0.902 32 H 0.123 0.877 33 H 0.077 0.923 34 H 0.138 0.862 35 H 0.113 0.887 36 H 0.097 0.903 37 H 0.035 0.965 38 H 0.241 0.759 39 H 0.248 0.752 40 H 0.080 0.920 41 H 0.049 0.951 42 H 0.075 0.925 43 H 0.107 0.893 44 H 0.105 0.895 45 H 0.107 0.893 46 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -15.588 -6.277 5.607 17.715 hybrid contribution 0.306 1.585 -0.434 1.672 sum -15.282 -4.691 5.172 16.801 Atomic orbital electron populations 1.22934 0.79375 1.03817 1.00941 1.87833 1.21651 1.28787 1.95639 1.22403 0.92668 0.84502 1.01269 1.21791 0.94162 0.97723 1.02605 1.21147 0.77240 0.95978 1.03422 1.46986 1.07223 1.77042 1.04019 1.21833 0.98322 0.95458 0.85706 1.22637 0.88161 0.91406 0.99865 1.86348 1.33394 1.25830 1.92971 1.16193 0.82076 0.77772 0.84288 1.90804 1.69182 1.60178 1.32194 1.45136 1.05641 1.76045 1.10584 1.20988 0.91376 0.98979 0.84755 1.19451 0.90523 0.93925 0.99868 1.20398 1.21290 0.90288 1.19480 0.92609 1.25213 0.95805 0.97308 0.95867 1.69982 1.47577 1.04991 1.32976 0.86361 0.78133 0.76377 0.83228 1.22340 1.23675 1.18108 1.23140 1.00710 1.06242 0.92991 1.22863 1.03054 0.93184 1.00558 0.88564 0.92610 0.93574 0.90919 0.93264 0.93749 0.90177 0.87708 0.92272 0.86241 0.88746 0.90276 0.96536 0.75926 0.75246 0.91962 0.95149 0.92496 0.89342 0.89516 0.89330 0.88606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 113.37 1.25 1.64 16 2 O -0.42 -9.81 10.70 -148.98 -1.59 -11.40 16 3 C 0.07 1.46 5.94 71.99 0.43 1.88 16 4 C -0.12 -3.12 5.91 30.60 0.18 -2.94 16 5 C 0.15 4.04 5.29 86.38 0.46 4.50 16 6 N -0.62 -20.04 2.40 -839.84 -2.02 -22.05 16 7 C 0.11 2.84 5.53 86.38 0.48 3.31 16 8 C 0.06 1.63 7.36 71.98 0.53 2.16 16 9 O -0.58 -14.72 13.00 -148.98 -1.94 -16.65 16 10 C 0.70 29.01 8.23 179.06 1.47 30.48 16 11 O -0.64 -31.34 15.90 -3.99 -0.06 -31.41 16 12 N -0.72 -29.88 4.88 -478.55 -2.34 -32.21 16 13 C 0.16 7.22 4.35 86.38 0.38 7.59 16 14 C -0.04 -1.58 1.45 -52.93 -0.08 -1.66 16 15 C -0.48 -24.42 8.84 25.60 0.23 -24.20 16 16 H 0.06 3.10 8.06 -2.91 -0.02 3.08 16 17 C 0.06 3.17 5.37 84.66 0.45 3.62 16 18 N -0.92 -51.72 13.96 21.45 0.30 -51.42 16 19 Si 0.93 46.69 23.94 68.60 1.64 48.34 16 20 H -0.30 -15.83 7.11 99.48 0.71 -15.12 16 21 H -0.31 -15.61 7.11 99.48 0.71 -14.90 16 22 H -0.26 -12.42 6.40 99.48 0.64 -11.78 16 23 C -0.19 -7.37 9.96 30.62 0.30 -7.07 16 24 C -0.16 -5.74 9.93 30.62 0.30 -5.44 16 25 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.05 0.65 8.14 -2.38 -0.02 0.63 16 28 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.10 2.44 7.62 -2.38 -0.02 2.42 16 33 H 0.06 1.92 7.35 -2.39 -0.02 1.91 16 34 H 0.12 2.33 8.03 -2.39 -0.02 2.31 16 35 H 0.09 2.39 6.52 -2.38 -0.02 2.37 16 36 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.02 0.60 8.14 -2.39 -0.02 0.58 16 38 H 0.39 7.29 9.12 -74.06 -0.68 6.61 16 39 H 0.41 16.24 5.76 -92.70 -0.53 15.71 16 40 H 0.06 2.62 8.09 -2.39 -0.02 2.60 16 41 H 0.03 1.52 2.58 -2.39 -0.01 1.51 16 42 H 0.27 14.39 8.31 -92.71 -0.77 13.62 16 43 H 0.09 3.08 8.14 -2.39 -0.02 3.06 16 44 H 0.09 3.35 8.14 -2.39 -0.02 3.33 16 45 H 0.09 3.13 8.14 -2.39 -0.02 3.11 16 46 H 0.10 3.06 8.14 -2.39 -0.02 3.04 16 Total: -1.00 -69.87 371.85 0.07 -69.80 By element: Atomic # 1 Polarization: 33.43 SS G_CDS: -0.30 Total: 33.13 kcal Atomic # 6 Polarization: 7.51 SS G_CDS: 6.38 Total: 13.89 kcal Atomic # 7 Polarization: -101.63 SS G_CDS: -4.06 Total: -105.68 kcal Atomic # 8 Polarization: -55.87 SS G_CDS: -3.59 Total: -59.47 kcal Atomic # 14 Polarization: 46.69 SS G_CDS: 1.64 Total: 48.34 kcal Total: -69.87 0.07 -69.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431198086.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.005 kcal (2) G-P(sol) polarization free energy of solvation -69.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds