Wall clock time and date at job start Fri Apr 10 2020 17:48:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 N 1.46906 * 109.47302 * 240.00536 * 2 1 3 5 5 C 1.46897 * 111.00172 * 84.99810 * 4 2 1 6 6 H 1.09007 * 109.47246 * 324.99979 * 5 4 2 7 7 C 1.52998 * 109.47337 * 85.00007 * 5 4 2 8 8 O 1.42904 * 109.46847 * 65.00000 * 7 5 4 9 9 C 1.53002 * 109.46938 * 205.00518 * 5 4 2 10 10 H 1.09002 * 110.27639 * 55.63528 * 9 5 4 11 11 C 1.54950 * 110.30852 * 177.83534 * 9 5 4 12 12 C 1.55300 * 100.94375 * 155.35864 * 11 9 5 13 13 C 1.54383 * 102.25013 * 325.86356 * 12 11 9 14 14 O 1.43236 * 107.59134 * 21.36088 * 13 12 11 15 15 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 16 16 O 1.21283 * 120.00261 * 120.00003 * 15 2 1 17 17 N 1.34777 * 120.00075 * 300.00543 * 15 2 1 18 18 C 1.46498 * 119.99953 * 359.97438 * 17 15 2 19 19 C 1.46500 * 120.00084 * 180.02562 * 17 15 2 20 20 C 1.50698 * 109.47587 * 89.99577 * 19 17 15 21 21 H 1.08008 * 119.99838 * 359.97438 * 20 19 17 22 22 C 1.37872 * 120.00427 * 179.97438 * 20 19 17 23 23 N 1.31519 * 119.99735 * 0.02562 * 22 20 19 24 24 Si 1.86794 * 120.00193 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47107 * 60.00513 * 24 22 20 26 26 H 1.48500 * 109.47254 * 180.02562 * 24 22 20 27 27 H 1.48499 * 109.47517 * 300.00415 * 24 22 20 28 28 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 29 29 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 31 31 H 1.00899 * 110.99467 * 321.04346 * 4 2 1 32 32 H 1.08996 * 109.47040 * 184.99918 * 7 5 4 33 33 H 1.08994 * 109.47178 * 305.00504 * 7 5 4 34 34 H 0.96696 * 114.00036 * 179.97438 * 8 7 5 35 35 H 1.09005 * 111.12236 * 273.27596 * 11 9 5 36 36 H 1.08995 * 111.12507 * 37.43738 * 11 9 5 37 37 H 1.09003 * 110.85038 * 207.67493 * 12 11 9 38 38 H 1.09001 * 111.02341 * 84.13067 * 12 11 9 39 39 H 1.09000 * 109.83403 * 261.84444 * 13 12 11 40 40 H 1.09007 * 109.83129 * 140.87251 * 13 12 11 41 41 H 1.09001 * 109.47076 * 90.00302 * 18 17 15 42 42 H 1.08996 * 109.47427 * 210.00785 * 18 17 15 43 43 H 1.08999 * 109.47290 * 330.00489 * 18 17 15 44 44 H 1.08995 * 109.46789 * 209.99681 * 19 17 15 45 45 H 1.08999 * 109.46866 * 329.99207 * 19 17 15 46 46 H 0.97001 * 119.99848 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6924 -1.1995 5 6 2.0825 0.2227 -2.3469 6 1 1.2576 0.9331 -2.2907 7 6 3.4111 0.9811 -2.3224 8 8 4.4880 0.0613 -2.5130 9 6 1.9770 -0.5795 -3.6454 10 1 1.0707 -1.1852 -3.6427 11 6 1.9865 0.3724 -4.8680 12 6 2.5171 -0.5768 -5.9767 13 6 3.4978 -1.4773 -5.1952 14 8 3.1341 -1.4143 -3.8112 15 6 2.0324 -0.7104 1.2304 16 8 2.7297 -1.6965 1.1191 17 7 1.7068 -0.2501 2.4545 18 6 0.8648 0.9413 2.5890 19 6 2.1956 -0.9404 3.6507 20 6 3.5230 -0.3563 4.0606 21 1 3.9591 0.4484 3.4872 22 6 4.1807 -0.8491 5.1676 23 7 3.6499 -1.8293 5.8655 24 14 5.8263 -0.1256 5.6752 25 1 5.6614 1.3204 5.9703 26 1 6.3218 -0.8252 6.8878 27 1 6.8043 -0.2971 4.5710 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 -0.8900 31 1 1.4496 -1.4978 -1.4101 32 1 3.4209 1.7227 -3.1211 33 1 3.5263 1.4811 -1.3608 34 1 5.3627 0.4736 -2.5092 35 1 0.9811 0.7240 -5.0999 36 1 2.6663 1.2094 -4.7089 37 1 3.0394 -0.0151 -6.7511 38 1 1.7077 -1.1666 -6.4069 39 1 4.5174 -1.1150 -5.3265 40 1 3.4205 -2.5047 -5.5514 41 1 -0.1832 0.6437 2.6222 42 1 1.1227 1.4665 3.5086 43 1 1.0286 1.6001 1.7362 44 1 1.4777 -0.8152 4.4612 45 1 2.3171 -2.0016 3.4335 46 1 4.1128 -2.1763 6.6442 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000447915484.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:48:56 Heat of formation + Delta-G solvation = -109.018140 kcal Electronic energy + Delta-G solvation = -26052.219433 eV Core-core repulsion = 22363.831171 eV Total energy + Delta-G solvation = -3688.388262 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 300.188 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.94489 -39.01727 -36.84031 -35.32376 -34.65704 -32.69500 -32.21453 -31.56695 -28.76812 -27.46159 -26.82175 -25.96459 -24.26175 -23.22936 -21.91387 -21.44274 -20.11409 -18.42890 -17.36772 -16.91895 -16.51343 -16.38091 -15.87879 -15.35858 -15.26147 -14.61747 -14.46147 -14.29396 -13.78922 -13.67489 -13.50924 -13.13621 -13.02850 -12.90674 -12.54618 -12.24722 -12.08426 -11.84948 -11.82238 -11.60215 -11.39925 -11.31763 -11.17856 -11.07356 -10.98065 -10.78638 -10.64395 -10.47841 -10.07345 -9.66758 -9.54752 -9.25374 -8.71795 -8.35525 -8.02218 -7.49267 -5.96325 -4.00610 3.37002 3.41601 3.44991 3.63068 3.64004 3.91823 4.25649 4.36647 4.47699 4.54530 4.66808 4.70195 4.87816 5.06284 5.08519 5.12416 5.20780 5.27613 5.34187 5.36430 5.38612 5.45737 5.52850 5.55034 5.61559 5.73042 5.77499 5.79374 5.79890 5.84490 5.96584 5.99714 6.06972 6.30307 6.99225 7.17753 7.28580 7.54525 7.57016 7.67546 8.00705 8.01296 8.33020 8.57703 9.00285 9.31571 9.64548 11.11697 Molecular weight = 300.19amu Principal moments of inertia in cm(-1) A = 0.021097 B = 0.003615 C = 0.003329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.887390 B = 7743.850249 C = 8408.282328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.066 3.934 3 H 0.093 0.907 4 N -0.641 5.641 5 C 0.089 3.911 6 H 0.063 0.937 7 C 0.091 3.909 8 O -0.525 6.525 9 C 0.086 3.914 10 H 0.064 0.936 11 C -0.152 4.152 12 C -0.155 4.155 13 C 0.050 3.950 14 O -0.328 6.328 15 C 0.509 3.491 16 O -0.514 6.514 17 N -0.608 5.608 18 C 0.084 3.916 19 C 0.248 3.752 20 C -0.524 4.524 21 H 0.056 0.944 22 C 0.060 3.940 23 N -0.897 5.897 24 Si 0.898 3.102 25 H -0.278 1.278 26 H -0.287 1.287 27 H -0.276 1.276 28 H 0.080 0.920 29 H 0.061 0.939 30 H 0.056 0.944 31 H 0.347 0.653 32 H 0.036 0.964 33 H 0.040 0.960 34 H 0.360 0.640 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.077 0.923 38 H 0.072 0.928 39 H 0.065 0.935 40 H 0.060 0.940 41 H 0.044 0.956 42 H 0.071 0.929 43 H 0.054 0.946 44 H 0.030 0.970 45 H 0.043 0.957 46 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.673 8.924 -22.048 24.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.047 4.047 3 H 0.111 0.889 4 N -0.272 5.272 5 C -0.021 4.021 6 H 0.080 0.920 7 C 0.012 3.988 8 O -0.327 6.327 9 C 0.027 3.973 10 H 0.082 0.918 11 C -0.190 4.190 12 C -0.193 4.193 13 C -0.027 4.027 14 O -0.247 6.247 15 C 0.294 3.706 16 O -0.388 6.388 17 N -0.342 5.342 18 C -0.060 4.060 19 C 0.129 3.871 20 C -0.563 4.563 21 H 0.074 0.926 22 C -0.141 4.141 23 N -0.536 5.536 24 Si 0.725 3.275 25 H -0.204 1.204 26 H -0.212 1.212 27 H -0.201 1.201 28 H 0.099 0.901 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.168 0.832 32 H 0.054 0.946 33 H 0.058 0.942 34 H 0.204 0.796 35 H 0.097 0.903 36 H 0.100 0.900 37 H 0.096 0.904 38 H 0.091 0.909 39 H 0.083 0.917 40 H 0.078 0.922 41 H 0.063 0.937 42 H 0.090 0.910 43 H 0.073 0.927 44 H 0.048 0.952 45 H 0.061 0.939 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.984 7.774 -21.623 24.016 hybrid contribution 0.219 1.211 0.019 1.231 sum -6.766 8.985 -21.604 24.356 Atomic orbital electron populations 1.22724 0.96009 1.03124 1.03178 1.21566 0.93300 0.98485 0.91390 0.88928 1.59936 1.58170 1.08010 1.01123 1.21800 0.96025 0.94238 0.90022 0.91954 1.22055 0.88074 0.90623 0.98059 1.86904 1.15339 1.34797 1.95620 1.22971 0.89955 0.90877 0.93492 0.91828 1.23359 1.02136 0.98881 0.94643 1.23103 0.99641 0.98071 0.98444 1.23046 0.98193 0.98704 0.82733 1.88774 1.45317 1.68064 1.22508 1.20112 0.81315 0.85428 0.83758 1.90688 1.36222 1.26069 1.85787 1.48132 1.50368 1.28382 1.07351 1.21724 0.93715 0.88363 1.02184 1.19224 0.94010 0.93725 0.80186 1.21419 1.04944 1.18963 1.10953 0.92611 1.24933 0.97882 0.94999 0.96331 1.69928 1.39076 1.26144 1.18427 0.86566 0.84100 0.78917 0.77879 1.20350 1.21217 1.20138 0.90088 0.91948 0.92543 0.83242 0.94638 0.94208 0.79635 0.90344 0.90008 0.90440 0.90900 0.91693 0.92226 0.93732 0.91036 0.92712 0.95217 0.93932 0.92744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.28 8.78 37.16 0.33 -1.95 16 2 C 0.07 1.03 1.99 -68.86 -0.14 0.90 16 3 H 0.09 1.34 6.36 -51.93 -0.33 1.01 16 4 N -0.64 -10.10 5.47 -100.95 -0.55 -10.65 16 5 C 0.09 1.07 2.27 -67.71 -0.15 0.92 16 6 H 0.06 0.60 7.11 -51.93 -0.37 0.23 16 7 C 0.09 1.11 6.45 37.16 0.24 1.35 16 8 O -0.53 -7.65 11.16 -58.56 -0.65 -8.30 16 9 C 0.09 0.95 3.09 -25.70 -0.08 0.87 16 10 H 0.06 0.67 8.06 -51.93 -0.42 0.25 16 11 C -0.15 -1.22 6.47 -24.48 -0.16 -1.37 16 12 C -0.15 -1.18 7.02 -24.79 -0.17 -1.35 16 13 C 0.05 0.53 7.79 37.88 0.30 0.82 16 14 O -0.33 -4.64 8.58 -58.56 -0.50 -5.14 16 15 C 0.51 11.17 7.14 -10.99 -0.08 11.09 16 16 O -0.51 -14.01 16.01 5.55 0.09 -13.92 16 17 N -0.61 -13.31 2.86 -182.96 -0.52 -13.84 16 18 C 0.08 1.35 8.80 59.85 0.53 1.88 16 19 C 0.25 6.72 5.16 -5.19 -0.03 6.70 16 20 C -0.52 -15.40 9.39 -34.44 -0.32 -15.72 16 21 H 0.06 1.64 7.81 -52.48 -0.41 1.23 16 22 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 23 N -0.90 -27.41 13.29 55.43 0.74 -26.68 16 24 Si 0.90 22.52 29.54 -169.99 -5.02 17.50 16 25 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 26 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 27 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 28 H 0.08 0.92 4.53 -51.93 -0.24 0.68 16 29 H 0.06 0.79 8.13 -51.93 -0.42 0.36 16 30 H 0.06 0.52 7.43 -51.93 -0.39 0.14 16 31 H 0.35 5.42 8.05 -39.29 -0.32 5.10 16 32 H 0.04 0.34 6.44 -51.93 -0.33 0.00 16 33 H 0.04 0.53 7.38 -51.93 -0.38 0.14 16 34 H 0.36 3.87 9.12 45.56 0.42 4.29 16 35 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.08 0.65 6.10 -51.93 -0.32 0.33 16 37 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.04 0.61 6.95 -51.93 -0.36 0.25 16 42 H 0.07 1.19 8.07 -51.93 -0.42 0.77 16 43 H 0.05 0.72 6.01 -51.93 -0.31 0.40 16 44 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 45 H 0.04 1.31 7.42 -51.93 -0.39 0.92 16 46 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 360.09 15.07 5.43 5.43 Total: -1.00 -37.49 360.09 -7.49 -44.98 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: -6.65 Total: 4.81 kcal Atomic # 6 Polarization: 5.65 SS G_CDS: 0.16 Total: 5.81 kcal Atomic # 7 Polarization: -50.82 SS G_CDS: -0.34 Total: -51.16 kcal Atomic # 8 Polarization: -26.30 SS G_CDS: -1.07 Total: -27.37 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -37.49 -7.49 -44.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000447915484.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.037 kcal (2) G-P(sol) polarization free energy of solvation -37.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds