Wall clock time and date at job start Fri Apr 10 2020 17:48:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 N 1.46906 * 109.47302 * 240.00536 * 2 1 3 5 5 C 1.46897 * 111.00172 * 84.99810 * 4 2 1 6 6 H 1.09007 * 109.47246 * 324.99979 * 5 4 2 7 7 C 1.52998 * 109.47337 * 85.00007 * 5 4 2 8 8 O 1.42904 * 109.46847 * 65.00000 * 7 5 4 9 9 C 1.53002 * 109.46938 * 205.00518 * 5 4 2 10 10 H 1.09002 * 110.27639 * 55.63528 * 9 5 4 11 11 C 1.54950 * 110.30852 * 177.83534 * 9 5 4 12 12 C 1.55300 * 100.94375 * 155.35864 * 11 9 5 13 13 C 1.54383 * 102.25013 * 325.86356 * 12 11 9 14 14 O 1.43236 * 107.59134 * 21.36088 * 13 12 11 15 15 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 16 16 O 1.21283 * 120.00261 * 120.00003 * 15 2 1 17 17 N 1.34777 * 120.00075 * 300.00543 * 15 2 1 18 18 C 1.46498 * 119.99953 * 359.97438 * 17 15 2 19 19 C 1.46500 * 120.00084 * 180.02562 * 17 15 2 20 20 C 1.50698 * 109.47587 * 89.99577 * 19 17 15 21 21 H 1.08008 * 119.99838 * 359.97438 * 20 19 17 22 22 C 1.37872 * 120.00427 * 179.97438 * 20 19 17 23 23 N 1.31519 * 119.99735 * 0.02562 * 22 20 19 24 24 Si 1.86794 * 120.00193 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47107 * 60.00513 * 24 22 20 26 26 H 1.48500 * 109.47254 * 180.02562 * 24 22 20 27 27 H 1.48499 * 109.47517 * 300.00415 * 24 22 20 28 28 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 29 29 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 31 31 H 1.00899 * 110.99467 * 321.04346 * 4 2 1 32 32 H 1.08996 * 109.47040 * 184.99918 * 7 5 4 33 33 H 1.08994 * 109.47178 * 305.00504 * 7 5 4 34 34 H 0.96696 * 114.00036 * 179.97438 * 8 7 5 35 35 H 1.09005 * 111.12236 * 273.27596 * 11 9 5 36 36 H 1.08995 * 111.12507 * 37.43738 * 11 9 5 37 37 H 1.09003 * 110.85038 * 207.67493 * 12 11 9 38 38 H 1.09001 * 111.02341 * 84.13067 * 12 11 9 39 39 H 1.09000 * 109.83403 * 261.84444 * 13 12 11 40 40 H 1.09007 * 109.83129 * 140.87251 * 13 12 11 41 41 H 1.09001 * 109.47076 * 90.00302 * 18 17 15 42 42 H 1.08996 * 109.47427 * 210.00785 * 18 17 15 43 43 H 1.08999 * 109.47290 * 330.00489 * 18 17 15 44 44 H 1.08995 * 109.46789 * 209.99681 * 19 17 15 45 45 H 1.08999 * 109.46866 * 329.99207 * 19 17 15 46 46 H 0.97001 * 119.99848 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6924 -1.1995 5 6 2.0825 0.2227 -2.3469 6 1 1.2576 0.9331 -2.2907 7 6 3.4111 0.9811 -2.3224 8 8 4.4880 0.0613 -2.5130 9 6 1.9770 -0.5795 -3.6454 10 1 1.0707 -1.1852 -3.6427 11 6 1.9865 0.3724 -4.8680 12 6 2.5171 -0.5768 -5.9767 13 6 3.4978 -1.4773 -5.1952 14 8 3.1341 -1.4143 -3.8112 15 6 2.0324 -0.7104 1.2304 16 8 2.7297 -1.6965 1.1191 17 7 1.7068 -0.2501 2.4545 18 6 0.8648 0.9413 2.5890 19 6 2.1956 -0.9404 3.6507 20 6 3.5230 -0.3563 4.0606 21 1 3.9591 0.4484 3.4872 22 6 4.1807 -0.8491 5.1676 23 7 3.6499 -1.8293 5.8655 24 14 5.8263 -0.1256 5.6752 25 1 5.6614 1.3204 5.9703 26 1 6.3218 -0.8252 6.8878 27 1 6.8043 -0.2971 4.5710 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 -0.8900 31 1 1.4496 -1.4978 -1.4101 32 1 3.4209 1.7227 -3.1211 33 1 3.5263 1.4811 -1.3608 34 1 5.3627 0.4736 -2.5092 35 1 0.9811 0.7240 -5.0999 36 1 2.6663 1.2094 -4.7089 37 1 3.0394 -0.0151 -6.7511 38 1 1.7077 -1.1666 -6.4069 39 1 4.5174 -1.1150 -5.3265 40 1 3.4205 -2.5047 -5.5514 41 1 -0.1832 0.6437 2.6222 42 1 1.1227 1.4665 3.5086 43 1 1.0286 1.6001 1.7362 44 1 1.4777 -0.8152 4.4612 45 1 2.3171 -2.0016 3.4335 46 1 4.1128 -2.1763 6.6442 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000447915484.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:48:56 Heat of formation + Delta-G solvation = -139.682348 kcal Electronic energy + Delta-G solvation = -26053.549132 eV Core-core repulsion = 22363.831171 eV Total energy + Delta-G solvation = -3689.717961 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 300.188 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.04168 -40.35529 -37.91528 -36.58291 -36.42252 -34.75361 -33.12281 -32.57012 -30.12538 -28.98124 -27.81404 -27.47393 -25.78134 -24.53937 -23.11142 -22.34099 -21.02610 -19.98355 -18.69378 -18.35676 -18.04792 -17.40627 -17.28457 -16.74550 -16.35991 -16.33524 -15.86446 -15.40886 -14.98055 -14.77030 -14.74210 -14.23752 -14.19327 -14.07499 -13.82661 -13.52240 -13.50409 -13.28062 -13.23966 -12.85539 -12.62823 -12.50803 -12.46084 -12.37495 -12.26024 -12.15542 -12.02915 -11.76850 -11.70105 -11.41562 -10.64302 -10.62438 -10.40621 -10.12753 -9.36957 -9.13347 -8.21766 -6.37025 1.34668 1.40532 1.47408 1.96793 2.29090 2.42870 2.93802 3.06978 3.33631 3.51367 3.67859 3.76300 3.91216 4.03709 4.07749 4.10472 4.16436 4.34164 4.40635 4.43833 4.55325 4.59193 4.64659 4.68384 4.78972 4.82273 4.85634 4.92227 4.94922 4.96701 5.03162 5.05123 5.09997 5.23151 5.25411 5.33680 5.57576 5.87209 6.07341 6.09680 6.38543 6.48402 6.71615 6.89578 7.14936 7.29865 7.63317 8.84921 Molecular weight = 300.19amu Principal moments of inertia in cm(-1) A = 0.021097 B = 0.003615 C = 0.003329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.887390 B = 7743.850249 C = 8408.282328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.083 3.917 3 H 0.112 0.888 4 N -0.672 5.672 5 C 0.088 3.912 6 H 0.098 0.902 7 C 0.086 3.914 8 O -0.555 6.555 9 C 0.078 3.922 10 H 0.066 0.934 11 C -0.142 4.142 12 C -0.146 4.146 13 C 0.042 3.958 14 O -0.370 6.370 15 C 0.496 3.504 16 O -0.584 6.584 17 N -0.614 5.614 18 C 0.078 3.922 19 C 0.262 3.738 20 C -0.543 4.543 21 H 0.051 0.949 22 C 0.006 3.994 23 N -0.930 5.930 24 Si 0.968 3.032 25 H -0.257 1.257 26 H -0.276 1.276 27 H -0.281 1.281 28 H 0.090 0.910 29 H 0.050 0.950 30 H 0.095 0.905 31 H 0.343 0.657 32 H 0.070 0.930 33 H 0.025 0.975 34 H 0.370 0.630 35 H 0.104 0.896 36 H 0.085 0.915 37 H 0.094 0.906 38 H 0.082 0.918 39 H 0.060 0.940 40 H 0.056 0.944 41 H 0.075 0.925 42 H 0.063 0.937 43 H 0.092 0.908 44 H 0.024 0.976 45 H -0.009 1.009 46 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.794 12.048 -23.860 28.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.030 4.030 3 H 0.129 0.871 4 N -0.304 5.304 5 C -0.021 4.021 6 H 0.115 0.885 7 C 0.007 3.993 8 O -0.359 6.359 9 C 0.020 3.980 10 H 0.084 0.916 11 C -0.180 4.180 12 C -0.184 4.184 13 C -0.035 4.035 14 O -0.289 6.289 15 C 0.283 3.717 16 O -0.463 6.463 17 N -0.346 5.346 18 C -0.064 4.064 19 C 0.140 3.860 20 C -0.582 4.582 21 H 0.069 0.931 22 C -0.193 4.193 23 N -0.569 5.569 24 Si 0.792 3.208 25 H -0.181 1.181 26 H -0.201 1.201 27 H -0.206 1.206 28 H 0.109 0.891 29 H 0.069 0.931 30 H 0.114 0.886 31 H 0.162 0.838 32 H 0.087 0.913 33 H 0.044 0.956 34 H 0.216 0.784 35 H 0.122 0.878 36 H 0.103 0.897 37 H 0.113 0.887 38 H 0.101 0.899 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.094 0.906 42 H 0.082 0.918 43 H 0.111 0.889 44 H 0.042 0.958 45 H 0.010 0.990 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -8.148 10.964 -23.451 27.139 hybrid contribution 0.569 0.184 0.570 0.827 sum -7.578 11.148 -22.881 26.556 Atomic orbital electron populations 1.22662 0.92562 1.03204 1.05562 1.21409 0.95676 0.97750 0.88152 0.87080 1.59807 1.58909 1.09130 1.02511 1.22009 0.96926 0.94272 0.88924 0.88502 1.22255 0.87622 0.90879 0.98516 1.86880 1.16672 1.36585 1.95714 1.23136 0.89123 0.91370 0.94348 0.91592 1.23337 1.03712 0.98117 0.92804 1.23078 0.99230 0.97657 0.98403 1.23167 0.98894 0.99410 0.82053 1.88737 1.46593 1.69053 1.24490 1.21460 0.80012 0.84803 0.85377 1.90643 1.39409 1.29299 1.86910 1.48160 1.50761 1.29706 1.06019 1.22073 0.94229 0.86557 1.03553 1.18678 0.93642 0.91523 0.82153 1.21694 1.06084 1.19120 1.11291 0.93108 1.25890 1.01890 0.95276 0.96247 1.70052 1.40794 1.27238 1.18865 0.85463 0.78692 0.79221 0.77400 1.18118 1.20138 1.20635 0.89100 0.93120 0.88594 0.83765 0.91258 0.95630 0.78384 0.87771 0.89695 0.88723 0.89915 0.92207 0.92540 0.90641 0.91803 0.88926 0.95829 0.99043 0.92395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.71 8.78 71.98 0.63 -3.07 16 2 C 0.08 2.47 1.99 44.17 0.09 2.56 16 3 H 0.11 2.88 6.36 -2.39 -0.02 2.86 16 4 N -0.67 -20.73 5.47 -473.31 -2.59 -23.32 16 5 C 0.09 1.89 2.27 44.92 0.10 1.99 16 6 H 0.10 1.40 7.11 -2.38 -0.02 1.38 16 7 C 0.09 1.94 6.45 71.98 0.46 2.41 16 8 O -0.55 -16.14 11.16 -126.68 -1.41 -17.55 16 9 C 0.08 1.58 3.09 31.26 0.10 1.67 16 10 H 0.07 1.26 8.06 -2.39 -0.02 1.24 16 11 C -0.14 -1.76 6.47 32.05 0.21 -1.55 16 12 C -0.15 -1.84 7.02 31.85 0.22 -1.61 16 13 C 0.04 0.84 7.79 72.45 0.56 1.41 16 14 O -0.37 -10.38 8.58 -126.68 -1.09 -11.47 16 15 C 0.50 22.23 7.14 87.66 0.63 22.86 16 16 O -0.58 -33.75 16.01 -3.04 -0.05 -33.80 16 17 N -0.61 -27.25 2.86 -851.16 -2.43 -29.68 16 18 C 0.08 2.33 8.80 127.77 1.12 3.46 16 19 C 0.26 14.88 5.16 85.63 0.44 15.32 16 20 C -0.54 -32.90 9.39 25.60 0.24 -32.66 16 21 H 0.05 3.05 7.81 -2.91 -0.02 3.02 16 22 C 0.01 0.34 5.46 84.65 0.46 0.80 16 23 N -0.93 -58.41 13.29 21.45 0.28 -58.13 16 24 Si 0.97 46.67 29.54 68.60 2.03 48.70 16 25 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 26 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 27 H -0.28 -13.67 7.11 99.48 0.71 -12.96 16 28 H 0.09 1.68 4.53 -2.39 -0.01 1.67 16 29 H 0.05 1.18 8.13 -2.39 -0.02 1.16 16 30 H 0.10 1.26 7.43 -2.38 -0.02 1.25 16 31 H 0.34 10.75 8.05 -89.69 -0.72 10.03 16 32 H 0.07 1.08 6.44 -2.39 -0.02 1.07 16 33 H 0.03 0.64 7.38 -2.39 -0.02 0.62 16 34 H 0.37 8.07 9.12 -74.06 -0.68 7.40 16 35 H 0.10 0.79 8.14 -2.38 -0.02 0.77 16 36 H 0.08 1.00 6.10 -2.39 -0.01 0.99 16 37 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.06 1.12 8.14 -2.38 -0.02 1.10 16 41 H 0.08 1.82 6.95 -2.39 -0.02 1.81 16 42 H 0.06 2.02 8.07 -2.39 -0.02 2.01 16 43 H 0.09 2.08 6.01 -2.39 -0.01 2.06 16 44 H 0.02 1.34 8.07 -2.39 -0.02 1.33 16 45 H -0.01 -0.57 7.42 -2.39 -0.02 -0.59 16 46 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 Total: -1.00 -88.02 360.09 -0.39 -88.41 By element: Atomic # 1 Polarization: 23.65 SS G_CDS: -0.40 Total: 23.25 kcal Atomic # 6 Polarization: 8.32 SS G_CDS: 5.27 Total: 13.59 kcal Atomic # 7 Polarization: -106.39 SS G_CDS: -4.74 Total: -111.13 kcal Atomic # 8 Polarization: -60.27 SS G_CDS: -2.55 Total: -62.82 kcal Atomic # 14 Polarization: 46.67 SS G_CDS: 2.03 Total: 48.70 kcal Total: -88.02 -0.39 -88.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000447915484.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.273 kcal (2) G-P(sol) polarization free energy of solvation -88.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds