Wall clock time and date at job start Fri Apr 10 2020 17:47:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.46734 * 2 1 4 4 H 1.08998 * 110.33205 * 304.20152 * 3 2 1 5 5 C 1.54485 * 110.46310 * 181.88745 * 3 2 1 6 6 C 1.54683 * 104.07668 * 217.05017 * 5 3 2 7 7 C 1.54480 * 103.98162 * 0.13718 * 6 5 3 8 8 H 1.08998 * 110.37663 * 264.96496 * 7 6 5 9 9 C 1.50707 * 110.37459 * 142.73432 * 7 6 5 10 10 O 1.21277 * 120.00055 * 253.52258 * 9 7 6 11 11 N 1.34778 * 119.99737 * 73.52199 * 9 7 6 12 12 C 1.46503 * 120.00135 * 4.50820 * 11 9 7 13 13 C 1.52996 * 109.46949 * 92.27695 * 12 11 9 14 14 O 1.42903 * 109.47391 * 295.00182 * 13 12 11 15 15 C 1.46491 * 119.99904 * 184.50739 * 11 9 7 16 16 C 1.52995 * 109.47397 * 270.00093 * 15 11 9 17 17 N 1.46498 * 109.47621 * 180.02562 * 16 15 11 18 18 C 1.36936 * 120.00313 * 180.02562 * 17 16 15 19 19 H 1.08000 * 120.00189 * 359.97438 * 18 17 16 20 20 C 1.38814 * 119.99928 * 179.97438 * 18 17 16 21 21 N 1.31612 * 120.00147 * 359.97438 * 20 18 17 22 22 Si 1.86807 * 119.99895 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47038 * 0.02562 * 22 20 18 24 24 H 1.48497 * 109.46931 * 119.99799 * 22 20 18 25 25 H 1.48501 * 109.47010 * 240.00214 * 22 20 18 26 26 O 1.44428 * 110.37053 * 66.45370 * 3 2 1 27 27 H 1.08994 * 109.47334 * 300.00050 * 1 2 3 28 28 H 1.09002 * 109.47107 * 60.00648 * 1 2 3 29 29 H 1.09002 * 109.47027 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47486 * 240.00434 * 2 1 3 31 31 H 1.09001 * 109.47236 * 119.99892 * 2 1 3 32 32 H 1.08995 * 110.51462 * 335.78656 * 5 3 2 33 33 H 1.08997 * 110.51038 * 98.36126 * 5 3 2 34 34 H 1.09000 * 110.61537 * 241.49251 * 6 5 3 35 35 H 1.09003 * 110.49081 * 118.72042 * 6 5 3 36 36 H 1.09006 * 109.47141 * 332.28444 * 12 11 9 37 37 H 1.08993 * 109.47109 * 212.27984 * 12 11 9 38 38 H 1.08998 * 109.47236 * 175.00093 * 13 12 11 39 39 H 1.09007 * 109.47032 * 55.00227 * 13 12 11 40 40 H 0.96706 * 113.99648 * 180.02562 * 14 13 12 41 41 H 1.09007 * 109.47305 * 30.00340 * 15 11 9 42 42 H 1.09001 * 109.47515 * 150.00023 * 15 11 9 43 43 H 1.08998 * 109.47350 * 300.00434 * 16 15 11 44 44 H 1.09005 * 109.47317 * 60.00102 * 16 15 11 45 45 H 0.96999 * 119.99874 * 359.97438 * 17 16 15 46 46 H 0.97004 * 120.00369 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6244 1.9911 -0.8453 5 6 3.5838 1.4697 -0.0477 6 6 3.9672 2.6636 0.8580 7 6 2.6086 3.2125 1.3472 8 1 2.2792 4.0332 0.7100 9 6 2.7126 3.6706 2.7792 10 8 2.2081 3.0129 3.6644 11 7 3.3664 4.8112 3.0759 12 6 3.8903 5.6564 2.0001 13 6 2.8471 6.7115 1.6267 14 8 1.6956 6.0689 1.0760 15 6 3.5532 5.2057 4.4743 16 6 2.3716 6.0675 4.9233 17 7 2.5586 6.4626 6.3216 18 6 1.6207 7.2423 6.9442 19 1 0.7433 7.5664 6.4043 20 6 1.7978 7.6162 8.2692 21 7 2.8668 7.2209 8.9273 22 14 0.5187 8.6804 9.1183 23 1 -0.5802 8.9869 8.1677 24 1 -0.0304 7.9536 10.2911 25 1 1.1496 9.9462 9.5712 26 8 1.6975 2.0969 1.2412 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5137 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 3.9945 0.5410 0.3483 33 1 3.9315 1.6359 -1.0672 34 1 4.5023 3.4223 0.2869 35 1 4.5683 2.3248 1.7019 36 1 4.1115 5.0400 1.1287 37 1 4.8018 6.1500 2.3370 38 1 3.2691 7.3948 0.8898 39 1 2.5602 7.2701 2.5177 40 1 0.9917 6.6788 0.8157 41 1 3.6107 4.3141 5.0989 42 1 4.4767 5.7768 4.5705 43 1 2.3140 6.9590 4.2988 44 1 1.4481 5.4965 4.8272 45 1 3.3465 6.1713 6.8066 46 1 2.9908 7.4825 9.8532 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001672623509.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:47:34 Heat of formation + Delta-G solvation = -147.746010 kcal Electronic energy + Delta-G solvation = -25746.471654 eV Core-core repulsion = 22056.404026 eV Total energy + Delta-G solvation = -3690.067628 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 300.188 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.61068 -39.85664 -38.13327 -37.06520 -35.93696 -34.57583 -33.58575 -32.95233 -30.78368 -30.08425 -28.63350 -26.05831 -24.98181 -23.91078 -23.10652 -22.59064 -21.89969 -20.41979 -19.27045 -18.67270 -18.21130 -17.47690 -17.30050 -16.93341 -16.46564 -15.99945 -15.84110 -15.28901 -15.15446 -15.08735 -14.94154 -14.63792 -14.60512 -14.42365 -14.10280 -13.85540 -13.46164 -13.15765 -13.01801 -12.90670 -12.74543 -12.63692 -12.42905 -12.35785 -12.21676 -12.09685 -11.90589 -11.85822 -11.67580 -11.48021 -11.08067 -10.96461 -10.78000 -10.52361 -9.77779 -9.08738 -8.00533 -5.31420 1.43345 1.46241 1.49719 1.56242 1.79819 2.52661 2.96255 3.31714 3.33510 3.44884 3.55486 3.86859 3.91418 4.03561 4.04660 4.10630 4.19564 4.22255 4.29116 4.31508 4.36966 4.40733 4.51199 4.59148 4.62418 4.68084 4.74087 4.87252 4.90207 4.94707 4.99769 5.04227 5.06623 5.15296 5.16822 5.23995 5.39731 5.41945 5.51796 5.90247 6.21136 6.35989 6.89939 7.15514 7.27157 7.98196 8.24597 9.22996 Molecular weight = 300.19amu Principal moments of inertia in cm(-1) A = 0.020773 B = 0.003245 C = 0.003101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.552820 B = 8625.930155 C = 9026.769395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.116 4.116 3 C 0.061 3.939 4 H 0.085 0.915 5 C -0.141 4.141 6 C -0.140 4.140 7 C 0.062 3.938 8 H 0.126 0.874 9 C 0.517 3.483 10 O -0.584 6.584 11 N -0.596 5.596 12 C 0.093 3.907 13 C 0.049 3.951 14 O -0.589 6.589 15 C 0.121 3.879 16 C 0.152 3.848 17 N -0.742 5.742 18 C -0.251 4.251 19 H 0.070 0.930 20 C -0.072 4.072 21 N -0.967 5.967 22 Si 0.978 3.022 23 H -0.268 1.268 24 H -0.293 1.293 25 H -0.284 1.284 26 O -0.384 6.384 27 H 0.030 0.970 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.106 0.894 31 H 0.053 0.947 32 H 0.077 0.923 33 H 0.114 0.886 34 H 0.121 0.879 35 H 0.063 0.937 36 H 0.112 0.888 37 H 0.123 0.877 38 H 0.094 0.906 39 H 0.035 0.965 40 H 0.394 0.606 41 H 0.054 0.946 42 H 0.106 0.894 43 H 0.037 0.963 44 H -0.013 1.013 45 H 0.376 0.624 46 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.234 -7.049 -28.409 29.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.154 4.154 3 C 0.004 3.996 4 H 0.103 0.897 5 C -0.179 4.179 6 C -0.178 4.178 7 C 0.001 3.999 8 H 0.143 0.857 9 C 0.306 3.694 10 O -0.463 6.463 11 N -0.329 5.329 12 C -0.028 4.028 13 C -0.029 4.029 14 O -0.398 6.398 15 C -0.002 4.002 16 C 0.025 3.975 17 N -0.386 5.386 18 C -0.383 4.383 19 H 0.088 0.912 20 C -0.264 4.264 21 N -0.617 5.617 22 Si 0.806 3.194 23 H -0.192 1.192 24 H -0.220 1.220 25 H -0.211 1.211 26 O -0.303 6.303 27 H 0.050 0.950 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.124 0.876 31 H 0.072 0.928 32 H 0.096 0.904 33 H 0.132 0.868 34 H 0.140 0.860 35 H 0.082 0.918 36 H 0.130 0.870 37 H 0.141 0.859 38 H 0.112 0.888 39 H 0.053 0.947 40 H 0.244 0.756 41 H 0.072 0.928 42 H 0.124 0.876 43 H 0.054 0.946 44 H 0.005 0.995 45 H 0.208 0.792 46 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 5.004 -7.896 -27.699 29.234 hybrid contribution -0.900 0.989 1.343 1.895 sum 4.104 -6.907 -26.356 27.553 Atomic orbital electron populations 1.21719 0.95771 1.01937 1.01435 1.21632 0.96477 0.94038 1.03205 1.23407 0.95174 0.94555 0.86493 0.89689 1.23040 0.94519 0.98433 1.01892 1.23026 0.94773 0.99662 1.00365 1.23075 0.92268 0.92257 0.92259 0.85701 1.21035 0.76678 0.80282 0.91428 1.90703 1.47357 1.57174 1.51055 1.47765 1.56336 1.21995 1.06803 1.22309 0.96897 0.93321 0.90253 1.22861 0.87027 0.95040 0.97989 1.86356 1.29712 1.39576 1.84175 1.21414 0.98524 0.98463 0.81798 1.21010 0.95653 0.95458 0.85424 1.42412 1.25666 1.61413 1.09086 1.19597 1.01009 1.22954 0.94721 0.91170 1.25623 1.00274 1.03102 0.97446 1.69818 1.29801 1.51455 1.10613 0.85019 0.78359 0.77908 0.78109 1.19248 1.22013 1.21088 1.89267 1.56238 1.42778 1.42048 0.95029 0.91628 0.91689 0.87610 0.92789 0.90434 0.86785 0.86048 0.91812 0.86986 0.85882 0.88819 0.94675 0.75564 0.92777 0.87557 0.94564 0.99512 0.79219 0.93713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.84 9.83 71.98 0.71 -2.13 16 2 C -0.12 -2.01 5.58 30.60 0.17 -1.84 16 3 C 0.06 1.15 3.27 31.10 0.10 1.25 16 4 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 5 C -0.14 -1.94 6.64 31.67 0.21 -1.73 16 6 C -0.14 -2.36 5.92 31.67 0.19 -2.18 16 7 C 0.06 1.61 2.68 30.35 0.08 1.69 16 8 H 0.13 2.85 5.30 -2.39 -0.01 2.84 16 9 C 0.52 18.25 6.57 87.66 0.58 18.83 16 10 O -0.58 -28.03 16.20 15.18 0.25 -27.78 16 11 N -0.60 -17.57 2.44 -821.83 -2.01 -19.58 16 12 C 0.09 1.64 5.70 86.38 0.49 2.13 16 13 C 0.05 0.85 7.38 71.98 0.53 1.38 16 14 O -0.59 -11.50 11.06 -148.98 -1.65 -13.15 16 15 C 0.12 4.42 5.53 86.38 0.48 4.89 16 16 C 0.15 6.86 6.54 86.38 0.56 7.43 16 17 N -0.74 -40.71 5.60 -343.46 -1.92 -42.63 16 18 C -0.25 -14.93 9.99 84.03 0.84 -14.09 16 19 H 0.07 4.07 7.83 -2.91 -0.02 4.04 16 20 C -0.07 -4.30 5.50 84.86 0.47 -3.83 16 21 N -0.97 -60.80 13.06 21.65 0.28 -60.52 16 22 Si 0.98 47.64 29.55 68.60 2.03 49.67 16 23 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 24 H -0.29 -14.31 7.11 99.48 0.71 -13.60 16 25 H -0.28 -13.45 7.11 99.48 0.71 -12.74 16 26 O -0.38 -11.80 10.27 -130.78 -1.34 -13.15 16 27 H 0.03 0.79 7.91 -2.39 -0.02 0.77 16 28 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.08 1.09 7.88 -2.39 -0.02 1.07 16 33 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.12 1.10 6.85 -2.39 -0.02 1.08 16 35 H 0.06 1.28 7.86 -2.39 -0.02 1.26 16 36 H 0.11 1.37 4.69 -2.38 -0.01 1.35 16 37 H 0.12 1.53 7.92 -2.39 -0.02 1.51 16 38 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.03 0.81 5.95 -2.38 -0.01 0.80 16 40 H 0.39 4.92 9.12 -74.05 -0.68 4.24 16 41 H 0.05 2.29 7.49 -2.38 -0.02 2.28 16 42 H 0.11 3.23 7.91 -2.39 -0.02 3.21 16 43 H 0.04 1.52 6.00 -2.39 -0.01 1.51 16 44 H -0.01 -0.69 8.14 -2.38 -0.02 -0.71 16 45 H 0.38 21.41 7.67 -92.71 -0.71 20.70 16 46 H 0.25 15.30 8.31 -92.71 -0.77 14.53 16 Total: -1.00 -86.28 364.46 0.64 -85.64 By element: Atomic # 1 Polarization: 30.07 SS G_CDS: -0.40 Total: 29.68 kcal Atomic # 6 Polarization: 6.40 SS G_CDS: 5.41 Total: 11.81 kcal Atomic # 7 Polarization: -119.07 SS G_CDS: -3.65 Total: -122.72 kcal Atomic # 8 Polarization: -51.33 SS G_CDS: -2.75 Total: -54.07 kcal Atomic # 14 Polarization: 47.64 SS G_CDS: 2.03 Total: 49.67 kcal Total: -86.28 0.64 -85.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672623509.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.108 kcal (2) G-P(sol) polarization free energy of solvation -86.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds