Wall clock time and date at job start Fri Apr 10 2020 17:47:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42892 * 113.99779 * 2 1 4 4 C 1.52997 * 109.47405 * 182.84922 * 3 2 1 5 5 C 1.50698 * 112.84980 * 294.14380 * 4 3 2 6 6 O 1.21280 * 120.00298 * 104.01976 * 5 4 3 7 7 N 1.34779 * 120.00130 * 284.02467 * 5 4 3 8 8 C 1.46508 * 119.99451 * 355.89617 * 7 5 4 9 9 C 1.52996 * 109.46807 * 197.48961 * 8 7 5 10 10 O 1.42905 * 109.47020 * 78.04356 * 9 8 7 11 11 C 1.46499 * 120.00444 * 175.90629 * 7 5 4 12 12 C 1.53000 * 109.47392 * 89.99505 * 11 7 5 13 13 N 1.46501 * 109.46912 * 180.02562 * 12 11 7 14 14 C 1.36936 * 119.99686 * 179.97438 * 13 12 11 15 15 H 1.07999 * 119.99967 * 0.02562 * 14 13 12 16 16 C 1.38816 * 119.99950 * 179.97438 * 14 13 12 17 17 N 1.31619 * 119.99985 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 119.99950 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47356 * 90.00389 * 18 16 14 20 20 H 1.48502 * 109.46827 * 210.00057 * 18 16 14 21 21 H 1.48494 * 109.47184 * 329.99609 * 18 16 14 22 22 C 1.53787 * 113.68862 * 65.40450 * 4 3 2 23 23 C 1.53788 * 87.07611 * 89.13227 * 22 4 3 24 24 C 1.53777 * 113.61813 * 162.94357 * 4 3 2 25 25 H 1.08997 * 109.47338 * 303.08922 * 1 2 3 26 26 H 1.08995 * 109.47573 * 63.09815 * 1 2 3 27 27 H 1.09001 * 109.47058 * 183.09412 * 1 2 3 28 28 H 1.09003 * 109.47153 * 62.84977 * 3 2 1 29 29 H 1.09008 * 109.47236 * 302.84995 * 3 2 1 30 30 H 1.08998 * 109.47340 * 317.49175 * 8 7 5 31 31 H 1.09000 * 109.46535 * 77.49487 * 8 7 5 32 32 H 1.08999 * 109.47105 * 198.04218 * 9 8 7 33 33 H 1.08996 * 109.47521 * 318.04360 * 9 8 7 34 34 H 0.96702 * 113.99873 * 182.02113 * 10 9 8 35 35 H 1.09000 * 109.46706 * 209.99705 * 11 7 5 36 36 H 1.08998 * 109.46875 * 329.98878 * 11 7 5 37 37 H 1.08999 * 109.46681 * 300.00112 * 12 11 7 38 38 H 1.08996 * 109.47153 * 60.00046 * 12 11 7 39 39 H 0.96999 * 119.99793 * 359.97438 * 13 12 11 40 40 H 0.97000 * 120.00365 * 180.02562 * 17 16 14 41 41 H 1.08998 * 113.61273 * 203.67576 * 22 4 3 42 42 H 1.08996 * 113.61489 * 334.58821 * 22 4 3 43 43 H 1.09000 * 113.61102 * 270.87837 * 23 22 4 44 44 H 1.08998 * 113.60871 * 139.98167 * 23 22 4 45 45 H 1.08999 * 113.61646 * 25.34963 * 24 4 3 46 46 H 1.09002 * 113.61271 * 156.25220 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5337 1.1855 -0.0717 5 6 4.1290 0.5478 1.1571 6 8 4.5085 -0.6035 1.1196 7 7 4.2396 1.2569 2.2980 8 6 3.8648 2.6731 2.3194 9 6 4.4735 3.3430 3.5528 10 8 5.8586 3.6050 3.3178 11 6 4.7346 0.6116 3.5165 12 6 6.2568 0.7497 3.5844 13 7 6.7518 0.1039 4.8027 14 6 8.0930 0.0999 5.0789 15 1 8.7858 0.5732 4.3989 16 6 8.5620 -0.5115 6.2336 17 7 7.7177 -1.0879 7.0625 18 14 10.3915 -0.5163 6.6107 19 1 10.7360 0.6890 7.4068 20 1 10.7339 -1.7358 7.3858 21 1 11.1590 -0.5061 5.3396 22 6 4.0444 0.5787 -1.3893 23 6 4.0781 2.0123 -1.9449 24 6 4.2352 2.4881 -0.4910 25 1 -0.3634 0.5610 0.8610 26 1 -0.3634 0.4649 -0.9164 27 1 -0.3633 -1.0262 0.0555 28 1 1.7295 1.8281 0.9145 29 1 1.6486 1.8641 -0.8634 30 1 4.2381 3.1613 1.4192 31 1 2.7790 2.7609 2.3568 32 1 3.9547 4.2811 3.7501 33 1 4.3697 2.6825 4.4136 34 1 6.3171 4.0020 4.0711 35 1 4.2871 1.0895 4.3881 36 1 4.4657 -0.4446 3.5032 37 1 6.7041 0.2718 2.7128 38 1 6.5256 1.8059 3.5977 39 1 6.1295 -0.3209 5.4136 40 1 8.0453 -1.5149 7.8695 41 1 5.0295 0.1196 -1.3057 42 1 3.3171 -0.0645 -1.8846 43 1 3.1414 2.3234 -2.4074 44 1 4.9481 2.2185 -2.5683 45 1 3.6620 3.3862 -0.2612 46 1 5.2725 2.5509 -0.1618 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001672649866.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:47:37 Heat of formation + Delta-G solvation = -106.091360 kcal Electronic energy + Delta-G solvation = -26268.077741 eV Core-core repulsion = 22579.816394 eV Total energy + Delta-G solvation = -3688.261347 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 300.188 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.01592 -39.51540 -38.35601 -37.94606 -36.72449 -35.92712 -33.41913 -30.67026 -30.30893 -29.15149 -27.26111 -26.64334 -25.96287 -24.95588 -23.63055 -23.02686 -20.87017 -19.85360 -19.14720 -18.45109 -18.43784 -17.36424 -17.18810 -16.78018 -16.66478 -16.57250 -15.97262 -15.85818 -15.34045 -15.19976 -15.01316 -14.73044 -14.44764 -14.07476 -13.95432 -13.46218 -13.33213 -13.23394 -13.05352 -12.92300 -12.87299 -12.64047 -12.43835 -12.23186 -12.18004 -12.12447 -12.08155 -11.85816 -11.41779 -11.20367 -11.08576 -10.74258 -10.55953 -10.40212 -9.64777 -8.99255 -7.96752 -5.26267 1.44593 1.47961 1.56460 1.64223 1.92799 2.55884 2.67456 3.29138 3.33926 3.38035 3.63714 3.68798 3.84422 3.87030 3.94648 4.06728 4.19241 4.30511 4.33201 4.36783 4.44047 4.50368 4.51798 4.54214 4.60707 4.68757 4.76369 4.78013 4.79449 4.86655 4.91293 5.01157 5.08761 5.13288 5.17760 5.37127 5.42832 5.44912 5.57574 6.23552 6.25064 6.43669 6.89361 7.21595 7.30514 8.03828 8.30087 9.26943 Molecular weight = 300.19amu Principal moments of inertia in cm(-1) A = 0.019715 B = 0.003685 C = 0.003590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.927322 B = 7595.960746 C = 7797.037927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.420 6.420 3 C 0.090 3.910 4 C -0.105 4.105 5 C 0.520 3.480 6 O -0.590 6.590 7 N -0.600 5.600 8 C 0.089 3.911 9 C 0.054 3.946 10 O -0.581 6.581 11 C 0.120 3.880 12 C 0.135 3.865 13 N -0.742 5.742 14 C -0.244 4.244 15 H 0.069 0.931 16 C -0.074 4.074 17 N -0.970 5.970 18 Si 0.977 3.023 19 H -0.278 1.278 20 H -0.294 1.294 21 H -0.275 1.275 22 C -0.120 4.120 23 C -0.122 4.122 24 C -0.115 4.115 25 H 0.052 0.948 26 H 0.063 0.937 27 H 0.083 0.917 28 H 0.069 0.931 29 H 0.097 0.903 30 H 0.110 0.890 31 H 0.107 0.893 32 H 0.096 0.904 33 H 0.046 0.954 34 H 0.393 0.607 35 H 0.098 0.902 36 H 0.043 0.957 37 H -0.025 1.025 38 H 0.078 0.922 39 H 0.372 0.628 40 H 0.252 0.748 41 H 0.056 0.944 42 H 0.073 0.927 43 H 0.112 0.888 44 H 0.081 0.919 45 H 0.117 0.883 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.573 16.215 -16.628 29.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.340 6.340 3 C 0.014 3.986 4 C -0.108 4.108 5 C 0.309 3.691 6 O -0.469 6.469 7 N -0.333 5.333 8 C -0.032 4.032 9 C -0.023 4.023 10 O -0.390 6.390 11 C -0.003 4.003 12 C 0.008 3.992 13 N -0.385 5.385 14 C -0.376 4.376 15 H 0.087 0.913 16 C -0.266 4.266 17 N -0.620 5.620 18 Si 0.805 3.195 19 H -0.204 1.204 20 H -0.221 1.221 21 H -0.200 1.200 22 C -0.158 4.158 23 C -0.159 4.159 24 C -0.153 4.153 25 H 0.070 0.930 26 H 0.081 0.919 27 H 0.102 0.898 28 H 0.087 0.913 29 H 0.115 0.885 30 H 0.127 0.873 31 H 0.125 0.875 32 H 0.114 0.886 33 H 0.064 0.936 34 H 0.243 0.757 35 H 0.116 0.884 36 H 0.061 0.939 37 H -0.007 1.007 38 H 0.095 0.905 39 H 0.203 0.797 40 H 0.061 0.939 41 H 0.075 0.925 42 H 0.092 0.908 43 H 0.131 0.869 44 H 0.099 0.901 45 H 0.135 0.865 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -17.253 15.264 -17.264 28.787 hybrid contribution 0.978 -0.767 1.509 1.955 sum -16.275 14.496 -15.756 26.894 Atomic orbital electron populations 1.22911 0.79172 1.03421 1.01394 1.87974 1.21671 1.28679 1.95647 1.22332 0.88209 0.85070 1.02975 1.22271 0.96396 1.00265 0.91895 1.21143 0.77479 0.85586 0.84885 1.90678 1.51154 1.20558 1.84552 1.47940 1.64253 1.12006 1.09058 1.22434 1.00672 0.78696 1.01367 1.22672 0.82767 1.00259 0.96641 1.86449 1.22942 1.84978 1.44609 1.21305 0.94085 0.97148 0.87786 1.21380 0.92614 0.98262 0.86932 1.42406 1.04911 1.67678 1.23526 1.19555 0.85097 1.29094 1.03839 0.91261 1.25585 1.02307 1.01132 0.97571 1.69822 1.34880 1.43351 1.13984 0.85091 0.79676 0.76997 0.77688 1.20439 1.22061 1.20036 1.22751 1.00568 0.98580 0.93943 1.22887 1.04195 0.93130 0.95678 1.23044 1.00577 0.95048 0.96597 0.92966 0.91863 0.89832 0.91252 0.88482 0.87251 0.87505 0.88631 0.93565 0.75703 0.88374 0.93886 1.00690 0.90496 0.79692 0.93873 0.92548 0.90844 0.86930 0.90055 0.86451 0.90554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 113.37 1.25 1.65 16 2 O -0.42 -10.06 10.37 -148.98 -1.55 -11.60 16 3 C 0.09 1.56 5.09 71.98 0.37 1.92 16 4 C -0.11 -2.42 0.46 -52.40 -0.02 -2.44 16 5 C 0.52 18.10 6.50 87.66 0.57 18.67 16 6 O -0.59 -27.89 16.05 -3.03 -0.05 -27.93 16 7 N -0.60 -18.59 2.86 -821.81 -2.35 -20.94 16 8 C 0.09 1.71 5.42 86.38 0.47 2.18 16 9 C 0.05 1.04 6.51 71.98 0.47 1.51 16 10 O -0.58 -14.17 10.80 -148.98 -1.61 -15.78 16 11 C 0.12 4.67 4.79 86.38 0.41 5.08 16 12 C 0.14 6.31 6.44 86.38 0.56 6.87 16 13 N -0.74 -41.41 5.60 -343.46 -1.92 -43.33 16 14 C -0.24 -14.64 9.99 84.03 0.84 -13.80 16 15 H 0.07 4.06 7.83 -2.91 -0.02 4.04 16 16 C -0.07 -4.44 5.50 84.86 0.47 -3.97 16 17 N -0.97 -61.57 13.06 21.65 0.28 -61.29 16 18 Si 0.98 48.04 29.55 68.60 2.03 50.06 16 19 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 20 H -0.29 -14.48 7.11 99.48 0.71 -13.77 16 21 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 22 C -0.12 -2.87 6.82 31.12 0.21 -2.66 16 23 C -0.12 -1.70 7.73 31.12 0.24 -1.46 16 24 C -0.12 -1.83 4.74 31.12 0.15 -1.68 16 25 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 26 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 27 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.07 0.96 6.52 -2.39 -0.02 0.95 16 29 H 0.10 0.97 7.32 -2.38 -0.02 0.95 16 30 H 0.11 1.81 4.15 -2.39 -0.01 1.80 16 31 H 0.11 1.32 6.87 -2.39 -0.02 1.31 16 32 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.05 1.08 5.45 -2.39 -0.01 1.07 16 34 H 0.39 7.58 9.12 -74.06 -0.68 6.90 16 35 H 0.10 3.32 5.91 -2.39 -0.01 3.30 16 36 H 0.04 1.96 7.48 -2.39 -0.02 1.94 16 37 H -0.02 -1.36 8.14 -2.39 -0.02 -1.38 16 38 H 0.08 3.32 4.69 -2.39 -0.01 3.31 16 39 H 0.37 21.71 7.67 -92.71 -0.71 21.00 16 40 H 0.25 15.41 8.31 -92.71 -0.77 14.64 16 41 H 0.06 1.70 7.92 -2.39 -0.02 1.68 16 42 H 0.07 1.76 7.98 -2.39 -0.02 1.74 16 43 H 0.11 0.93 7.61 -2.39 -0.02 0.92 16 44 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 45 H 0.12 0.97 7.30 -2.39 -0.02 0.95 16 46 H 0.08 1.57 7.84 -2.39 -0.02 1.55 16 Total: -1.00 -86.55 359.44 0.42 -86.13 By element: Atomic # 1 Polarization: 33.19 SS G_CDS: -0.38 Total: 32.80 kcal Atomic # 6 Polarization: 5.91 SS G_CDS: 5.97 Total: 11.88 kcal Atomic # 7 Polarization: -121.57 SS G_CDS: -4.00 Total: -125.56 kcal Atomic # 8 Polarization: -52.11 SS G_CDS: -3.20 Total: -55.31 kcal Atomic # 14 Polarization: 48.04 SS G_CDS: 2.03 Total: 50.06 kcal Total: -86.55 0.42 -86.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672649866.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.958 kcal (2) G-P(sol) polarization free energy of solvation -86.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds