Wall clock time and date at job start Fri Apr 10 2020 17:47:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.47093 * 2 1 4 4 C 1.50692 * 109.47372 * 239.99438 * 2 1 3 5 5 O 1.21279 * 120.00626 * 258.04958 * 4 2 1 6 6 N 1.34781 * 119.99735 * 78.05498 * 4 2 1 7 7 C 1.46499 * 120.00060 * 4.93649 * 6 4 2 8 8 C 1.53005 * 109.46934 * 84.39576 * 7 6 4 9 9 O 1.42897 * 109.47065 * 65.00119 * 8 7 6 10 10 C 1.46501 * 119.99809 * 184.93745 * 6 4 2 11 11 C 1.53001 * 109.47199 * 90.00117 * 10 6 4 12 12 N 1.46501 * 109.47199 * 179.97438 * 11 10 6 13 13 C 1.36939 * 119.99966 * 179.97438 * 12 11 10 14 14 H 1.08005 * 119.99723 * 359.97438 * 13 12 11 15 15 C 1.38807 * 119.99782 * 180.02562 * 13 12 11 16 16 N 1.31610 * 120.00386 * 359.97438 * 15 13 12 17 17 Si 1.86808 * 119.99549 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47343 * 60.00174 * 17 15 13 19 19 H 1.48504 * 109.46551 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47023 * 299.99636 * 17 15 13 21 21 C 1.53003 * 109.47055 * 119.99378 * 2 1 3 22 22 H 1.09002 * 109.82014 * 60.56820 * 21 2 1 23 23 C 1.54379 * 109.83125 * 299.59473 * 21 2 1 24 24 C 1.55304 * 102.24971 * 219.12762 * 23 21 2 25 25 C 1.54938 * 100.94522 * 34.13372 * 24 23 21 26 26 O 1.43236 * 109.83317 * 181.45564 * 21 2 1 27 27 H 1.09002 * 109.47024 * 172.60987 * 1 2 3 28 28 H 1.09004 * 109.47125 * 52.61357 * 1 2 3 29 29 H 1.08993 * 109.47258 * 292.61134 * 1 2 3 30 30 H 1.08996 * 109.47027 * 204.39171 * 7 6 4 31 31 H 1.08992 * 109.47263 * 324.39670 * 7 6 4 32 32 H 1.09002 * 109.47080 * 184.99805 * 8 7 6 33 33 H 1.08998 * 109.47409 * 304.99923 * 8 7 6 34 34 H 0.96700 * 114.00084 * 179.97438 * 9 8 7 35 35 H 1.09001 * 109.46982 * 209.99765 * 10 6 4 36 36 H 1.08999 * 109.47323 * 329.99689 * 10 6 4 37 37 H 1.09001 * 109.46865 * 299.99718 * 11 10 6 38 38 H 1.08999 * 109.47333 * 59.99578 * 11 10 6 39 39 H 0.97003 * 119.99946 * 359.97438 * 12 11 10 40 40 H 0.96999 * 120.00195 * 179.97438 * 16 15 13 41 41 H 1.09003 * 110.84865 * 337.31527 * 23 21 2 42 42 H 1.09003 * 110.85361 * 100.93578 * 23 21 2 43 43 H 1.08995 * 111.12616 * 276.20836 * 24 23 21 44 44 H 1.09005 * 111.16115 * 152.06743 * 24 23 21 45 45 H 1.09001 * 110.31083 * 204.64073 * 25 24 23 46 46 H 1.09001 * 110.39767 * 82.51275 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2303 5 8 2.4396 -1.8499 -1.1489 6 7 2.0292 -0.0795 -2.4213 7 6 1.6400 1.3305 -2.5023 8 6 2.8503 2.2125 -2.1887 9 8 3.8434 2.0358 -3.2008 10 6 2.4151 -0.8038 -3.6349 11 6 1.1759 -1.4467 -4.2609 12 7 1.5616 -2.1705 -5.4748 13 6 0.6128 -2.8306 -6.2091 14 1 -0.4199 -2.8180 -5.8930 15 6 0.9784 -3.5168 -7.3590 16 7 2.2369 -3.5325 -7.7439 17 14 -0.3159 -4.4179 -8.3601 18 1 -1.3403 -3.4509 -8.8299 19 1 0.3269 -5.0654 -9.5318 20 1 -0.9632 -5.4533 -7.5150 21 6 2.0400 -0.7211 1.2494 22 1 1.6881 -1.7528 1.2501 23 6 1.5384 0.0062 2.5153 24 6 2.7716 -0.0801 3.4553 25 6 3.9298 0.0219 2.4313 26 8 3.4719 -0.6961 1.2744 27 1 -0.3633 -1.0192 -0.1322 28 1 -0.3633 0.6240 -0.8166 29 1 -0.3633 0.3951 0.9486 30 1 1.2804 1.5510 -3.5073 31 1 0.8479 1.5307 -1.7809 32 1 2.5411 3.2574 -2.1616 33 1 3.2641 1.9308 -1.2205 34 1 4.6408 2.5661 -3.0664 35 1 2.8623 -0.1091 -4.3459 36 1 3.1378 -1.5792 -3.3810 37 1 0.7286 -2.1415 -3.5499 38 1 0.4532 -0.6713 -4.5148 39 1 2.4892 -2.1821 -5.7585 40 1 2.4924 -4.0124 -8.5472 41 1 1.2912 1.0445 2.2940 42 1 0.6835 -0.5133 2.9483 43 1 2.7970 -1.0331 3.9836 44 1 2.7918 0.7550 4.1557 45 1 4.8312 -0.4418 2.8321 46 1 4.1221 1.0645 2.1779 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001672673600.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:47:46 Heat of formation + Delta-G solvation = -118.839400 kcal Electronic energy + Delta-G solvation = -25831.512992 eV Core-core repulsion = 22142.698848 eV Total energy + Delta-G solvation = -3688.814143 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 300.188 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.51525 -39.07754 -37.09964 -35.48352 -34.49333 -33.81011 -32.19077 -31.31275 -29.41003 -28.37507 -27.28957 -24.95554 -23.54068 -23.03688 -22.21876 -21.56584 -20.65062 -18.76346 -17.88646 -17.14445 -17.07193 -16.51704 -16.26973 -15.92589 -15.30857 -14.73729 -14.57464 -14.22506 -13.98516 -13.84538 -13.48787 -13.35962 -13.14163 -13.03498 -12.89366 -12.66897 -12.39546 -12.12514 -11.87354 -11.75499 -11.50657 -11.36945 -11.25018 -11.09268 -11.07746 -10.83764 -10.80643 -10.50447 -10.13245 -10.06632 -9.67339 -9.63123 -9.34756 -8.77440 -8.32087 -6.82695 -5.66579 -2.95385 2.91655 3.17333 3.50745 3.54295 3.56115 3.63717 4.11326 4.17597 4.33185 4.52326 4.60505 4.69382 4.81420 4.87821 4.96477 4.99364 5.05121 5.13904 5.15783 5.29261 5.31148 5.37777 5.41932 5.47314 5.55406 5.59544 5.64418 5.66756 5.71419 5.87914 5.92429 6.04184 6.06446 6.19771 6.36411 6.72583 6.88923 6.93304 7.08125 7.51936 7.72460 7.77768 8.49635 8.53048 9.62510 10.20721 10.56024 11.56429 Molecular weight = 300.19amu Principal moments of inertia in cm(-1) A = 0.019835 B = 0.003367 C = 0.003153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.305006 B = 8313.280739 C = 8878.359354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.123 4.123 3 H 0.091 0.909 4 C 0.521 3.479 5 O -0.522 6.522 6 N -0.600 5.600 7 C 0.104 3.896 8 C 0.057 3.943 9 O -0.561 6.561 10 C 0.113 3.887 11 C 0.144 3.856 12 N -0.730 5.730 13 C -0.237 4.237 14 H 0.069 0.931 15 C -0.015 4.015 16 N -0.934 5.934 17 Si 0.908 3.092 18 H -0.286 1.286 19 H -0.291 1.291 20 H -0.286 1.286 21 C 0.099 3.901 22 H 0.091 0.909 23 C -0.150 4.150 24 C -0.157 4.157 25 C 0.046 3.954 26 O -0.363 6.363 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.092 0.908 31 H 0.090 0.910 32 H 0.052 0.948 33 H 0.045 0.955 34 H 0.376 0.624 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.019 0.981 38 H 0.015 0.985 39 H 0.384 0.616 40 H 0.255 0.745 41 H 0.078 0.922 42 H 0.084 0.916 43 H 0.079 0.921 44 H 0.081 0.919 45 H 0.083 0.917 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.168 16.733 23.661 28.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.145 4.145 3 H 0.109 0.891 4 C 0.308 3.692 5 O -0.397 6.397 6 N -0.333 5.333 7 C -0.020 4.020 8 C -0.022 4.022 9 O -0.365 6.365 10 C -0.010 4.010 11 C 0.015 3.985 12 N -0.374 5.374 13 C -0.368 4.368 14 H 0.087 0.913 15 C -0.211 4.211 16 N -0.582 5.582 17 Si 0.739 3.261 18 H -0.213 1.213 19 H -0.217 1.217 20 H -0.213 1.213 21 C 0.041 3.959 22 H 0.109 0.891 23 C -0.188 4.188 24 C -0.194 4.194 25 C -0.031 4.031 26 O -0.282 6.282 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.088 0.912 30 H 0.111 0.889 31 H 0.108 0.892 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.222 0.778 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.037 0.963 38 H 0.033 0.967 39 H 0.218 0.782 40 H 0.065 0.935 41 H 0.097 0.903 42 H 0.103 0.897 43 H 0.097 0.903 44 H 0.100 0.900 45 H 0.101 0.899 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.418 15.523 23.236 27.947 hybrid contribution -0.115 0.193 -0.319 0.391 sum -0.532 15.716 22.917 27.793 Atomic orbital electron populations 1.21796 0.92035 1.03694 1.02779 1.21790 0.97745 1.00789 0.94199 0.89092 1.20303 0.78201 0.86785 0.83959 1.90726 1.45569 1.18252 1.85176 1.47740 1.67517 1.10489 1.07567 1.21744 0.95049 0.80862 1.04302 1.22738 0.90292 0.98129 0.91069 1.86603 1.30056 1.70386 1.49475 1.21658 0.98062 0.96583 0.84667 1.20914 0.94319 0.94019 0.89220 1.42211 1.08750 1.61059 1.25405 1.19168 0.89971 1.24208 1.03461 0.91329 1.24741 0.96276 1.01321 0.98716 1.69655 1.15132 1.47346 1.26091 0.86246 0.80577 0.79610 0.79626 1.21328 1.21674 1.21283 1.22569 0.81362 0.99887 0.92098 0.89120 1.23219 0.98860 1.01603 0.95089 1.23269 0.94677 1.03172 0.98302 1.23387 0.97443 0.96588 0.85670 1.88617 1.19713 1.75401 1.44504 0.91354 0.91342 0.91192 0.88928 0.89180 0.92981 0.93667 0.77764 0.89968 0.90039 0.96319 0.96697 0.78212 0.93483 0.90305 0.89717 0.90260 0.90028 0.89861 0.92614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 8.88 37.16 0.33 -0.95 16 2 C -0.12 -1.37 1.52 -91.77 -0.14 -1.51 16 3 H 0.09 0.83 5.94 -51.93 -0.31 0.52 16 4 C 0.52 8.51 6.54 -10.99 -0.07 8.44 16 5 O -0.52 -11.09 15.36 0.88 0.01 -11.08 16 6 N -0.60 -9.43 2.43 -173.69 -0.42 -9.85 16 7 C 0.10 1.18 5.43 -4.04 -0.02 1.16 16 8 C 0.06 0.55 7.12 37.16 0.26 0.81 16 9 O -0.56 -6.64 13.13 -35.23 -0.46 -7.10 16 10 C 0.11 2.21 5.47 -4.04 -0.02 2.19 16 11 C 0.14 3.28 6.58 -4.04 -0.03 3.25 16 12 N -0.73 -20.23 5.60 -59.91 -0.34 -20.57 16 13 C -0.24 -7.08 9.99 -15.06 -0.15 -7.23 16 14 H 0.07 1.98 7.83 -52.48 -0.41 1.57 16 15 C -0.01 -0.45 5.50 -17.44 -0.10 -0.54 16 16 N -0.93 -29.62 13.06 55.49 0.72 -28.90 16 17 Si 0.91 23.37 29.55 -169.99 -5.02 18.35 16 18 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 19 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 20 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 21 C 0.10 1.12 2.61 -26.01 -0.07 1.05 16 22 H 0.09 1.20 7.91 -51.93 -0.41 0.79 16 23 C -0.15 -1.07 5.33 -24.79 -0.13 -1.20 16 24 C -0.16 -1.05 7.15 -24.49 -0.18 -1.22 16 25 C 0.05 0.41 7.78 38.18 0.30 0.71 16 26 O -0.36 -4.93 10.48 -39.91 -0.42 -5.35 16 27 H 0.07 0.71 8.13 -51.93 -0.42 0.29 16 28 H 0.07 0.55 6.30 -51.93 -0.33 0.22 16 29 H 0.07 0.43 6.85 -51.93 -0.36 0.07 16 30 H 0.09 1.11 8.03 -51.93 -0.42 0.69 16 31 H 0.09 0.75 4.93 -51.93 -0.26 0.49 16 32 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.05 0.43 7.05 -51.93 -0.37 0.06 16 34 H 0.38 2.74 9.12 45.56 0.42 3.15 16 35 H 0.08 1.60 7.66 -51.93 -0.40 1.20 16 36 H 0.08 1.81 7.36 -51.93 -0.38 1.42 16 37 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.38 11.13 7.67 -40.82 -0.31 10.82 16 40 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 41 H 0.08 0.45 7.62 -51.93 -0.40 0.05 16 42 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 45 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 LS Contribution 366.69 15.07 5.53 5.53 Total: -1.00 -38.34 366.69 -7.27 -45.61 By element: Atomic # 1 Polarization: 15.27 SS G_CDS: -6.86 Total: 8.40 kcal Atomic # 6 Polarization: 4.97 SS G_CDS: -0.01 Total: 4.96 kcal Atomic # 7 Polarization: -59.28 SS G_CDS: -0.03 Total: -59.31 kcal Atomic # 8 Polarization: -22.67 SS G_CDS: -0.87 Total: -23.53 kcal Atomic # 14 Polarization: 23.37 SS G_CDS: -5.02 Total: 18.35 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -38.34 -7.27 -45.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672673600.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.229 kcal (2) G-P(sol) polarization free energy of solvation -38.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds