Wall clock time and date at job start Fri Apr 10 2020 17:47:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.47093 * 2 1 4 4 C 1.50692 * 109.47372 * 239.99438 * 2 1 3 5 5 O 1.21279 * 120.00626 * 258.04958 * 4 2 1 6 6 N 1.34781 * 119.99735 * 78.05498 * 4 2 1 7 7 C 1.46499 * 120.00060 * 4.93649 * 6 4 2 8 8 C 1.53005 * 109.46934 * 84.39576 * 7 6 4 9 9 O 1.42897 * 109.47065 * 65.00119 * 8 7 6 10 10 C 1.46501 * 119.99809 * 184.93745 * 6 4 2 11 11 C 1.53001 * 109.47199 * 90.00117 * 10 6 4 12 12 N 1.46501 * 109.47199 * 179.97438 * 11 10 6 13 13 C 1.36939 * 119.99966 * 179.97438 * 12 11 10 14 14 H 1.08005 * 119.99723 * 359.97438 * 13 12 11 15 15 C 1.38807 * 119.99782 * 180.02562 * 13 12 11 16 16 N 1.31610 * 120.00386 * 359.97438 * 15 13 12 17 17 Si 1.86808 * 119.99549 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47343 * 60.00174 * 17 15 13 19 19 H 1.48504 * 109.46551 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.47023 * 299.99636 * 17 15 13 21 21 C 1.53003 * 109.47055 * 119.99378 * 2 1 3 22 22 H 1.09002 * 109.82014 * 60.56820 * 21 2 1 23 23 C 1.54379 * 109.83125 * 299.59473 * 21 2 1 24 24 C 1.55304 * 102.24971 * 219.12762 * 23 21 2 25 25 C 1.54938 * 100.94522 * 34.13372 * 24 23 21 26 26 O 1.43236 * 109.83317 * 181.45564 * 21 2 1 27 27 H 1.09002 * 109.47024 * 172.60987 * 1 2 3 28 28 H 1.09004 * 109.47125 * 52.61357 * 1 2 3 29 29 H 1.08993 * 109.47258 * 292.61134 * 1 2 3 30 30 H 1.08996 * 109.47027 * 204.39171 * 7 6 4 31 31 H 1.08992 * 109.47263 * 324.39670 * 7 6 4 32 32 H 1.09002 * 109.47080 * 184.99805 * 8 7 6 33 33 H 1.08998 * 109.47409 * 304.99923 * 8 7 6 34 34 H 0.96700 * 114.00084 * 179.97438 * 9 8 7 35 35 H 1.09001 * 109.46982 * 209.99765 * 10 6 4 36 36 H 1.08999 * 109.47323 * 329.99689 * 10 6 4 37 37 H 1.09001 * 109.46865 * 299.99718 * 11 10 6 38 38 H 1.08999 * 109.47333 * 59.99578 * 11 10 6 39 39 H 0.97003 * 119.99946 * 359.97438 * 12 11 10 40 40 H 0.96999 * 120.00195 * 179.97438 * 16 15 13 41 41 H 1.09003 * 110.84865 * 337.31527 * 23 21 2 42 42 H 1.09003 * 110.85361 * 100.93578 * 23 21 2 43 43 H 1.08995 * 111.12616 * 276.20836 * 24 23 21 44 44 H 1.09005 * 111.16115 * 152.06743 * 24 23 21 45 45 H 1.09001 * 110.31083 * 204.64073 * 25 24 23 46 46 H 1.09001 * 110.39767 * 82.51275 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2303 5 8 2.4396 -1.8499 -1.1489 6 7 2.0292 -0.0795 -2.4213 7 6 1.6400 1.3305 -2.5023 8 6 2.8503 2.2125 -2.1887 9 8 3.8434 2.0358 -3.2008 10 6 2.4151 -0.8038 -3.6349 11 6 1.1759 -1.4467 -4.2609 12 7 1.5616 -2.1705 -5.4748 13 6 0.6128 -2.8306 -6.2091 14 1 -0.4199 -2.8180 -5.8930 15 6 0.9784 -3.5168 -7.3590 16 7 2.2369 -3.5325 -7.7439 17 14 -0.3159 -4.4179 -8.3601 18 1 -1.3403 -3.4509 -8.8299 19 1 0.3269 -5.0654 -9.5318 20 1 -0.9632 -5.4533 -7.5150 21 6 2.0400 -0.7211 1.2494 22 1 1.6881 -1.7528 1.2501 23 6 1.5384 0.0062 2.5153 24 6 2.7716 -0.0801 3.4553 25 6 3.9298 0.0219 2.4313 26 8 3.4719 -0.6961 1.2744 27 1 -0.3633 -1.0192 -0.1322 28 1 -0.3633 0.6240 -0.8166 29 1 -0.3633 0.3951 0.9486 30 1 1.2804 1.5510 -3.5073 31 1 0.8479 1.5307 -1.7809 32 1 2.5411 3.2574 -2.1616 33 1 3.2641 1.9308 -1.2205 34 1 4.6408 2.5661 -3.0664 35 1 2.8623 -0.1091 -4.3459 36 1 3.1378 -1.5792 -3.3810 37 1 0.7286 -2.1415 -3.5499 38 1 0.4532 -0.6713 -4.5148 39 1 2.4892 -2.1821 -5.7585 40 1 2.4924 -4.0124 -8.5472 41 1 1.2912 1.0445 2.2940 42 1 0.6835 -0.5133 2.9483 43 1 2.7970 -1.0331 3.9836 44 1 2.7918 0.7550 4.1557 45 1 4.8312 -0.4418 2.8321 46 1 4.1221 1.0645 2.1779 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001672673600.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:47:45 Heat of formation + Delta-G solvation = -149.816870 kcal Electronic energy + Delta-G solvation = -25832.856276 eV Core-core repulsion = 22142.698848 eV Total energy + Delta-G solvation = -3690.157427 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 300.188 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.58004 -40.03803 -38.09662 -37.12592 -35.93984 -35.01350 -33.38566 -32.79223 -30.76172 -29.25303 -28.69379 -26.22773 -25.18645 -23.92008 -23.48421 -22.68333 -21.68350 -19.97784 -19.21112 -18.76101 -17.99706 -17.50131 -17.36871 -16.95892 -16.58078 -16.33042 -15.64450 -15.47816 -15.43050 -15.07402 -14.99455 -14.71010 -14.43087 -14.10775 -13.93497 -13.71173 -13.24469 -13.10835 -12.97826 -12.90548 -12.70592 -12.55146 -12.51340 -12.42189 -12.18166 -12.15937 -12.05188 -11.96711 -11.88511 -11.64463 -10.99461 -10.90455 -10.67593 -10.44540 -9.67280 -9.09683 -7.98680 -5.30784 1.44079 1.49562 1.55592 1.67813 1.94990 2.54795 2.90754 3.33630 3.40127 3.44949 3.57519 3.71062 3.98736 4.05010 4.07756 4.11352 4.15373 4.16838 4.26082 4.35529 4.37568 4.45787 4.47414 4.54635 4.59922 4.61506 4.80354 4.82253 4.83517 4.94326 4.94455 5.00027 5.03967 5.07546 5.08854 5.25209 5.33673 5.40376 5.56484 6.18848 6.21736 6.46760 6.95084 7.24228 7.27219 7.98570 8.24824 9.24890 Molecular weight = 300.19amu Principal moments of inertia in cm(-1) A = 0.019835 B = 0.003367 C = 0.003153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.305006 B = 8313.280739 C = 8878.359354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.111 4.111 3 H 0.122 0.878 4 C 0.510 3.490 5 O -0.586 6.586 6 N -0.599 5.599 7 C 0.093 3.907 8 C 0.058 3.942 9 O -0.594 6.594 10 C 0.132 3.868 11 C 0.153 3.847 12 N -0.744 5.744 13 C -0.254 4.254 14 H 0.075 0.925 15 C -0.075 4.075 16 N -0.970 5.970 17 Si 0.983 3.017 18 H -0.271 1.271 19 H -0.291 1.291 20 H -0.279 1.279 21 C 0.091 3.909 22 H 0.055 0.945 23 C -0.139 4.139 24 C -0.149 4.149 25 C 0.034 3.966 26 O -0.407 6.407 27 H 0.043 0.957 28 H 0.081 0.919 29 H 0.108 0.892 30 H 0.086 0.914 31 H 0.128 0.872 32 H 0.093 0.907 33 H 0.048 0.952 34 H 0.393 0.607 35 H 0.084 0.916 36 H 0.045 0.955 37 H -0.001 1.001 38 H 0.031 0.969 39 H 0.373 0.627 40 H 0.254 0.746 41 H 0.106 0.894 42 H 0.098 0.902 43 H 0.073 0.927 44 H 0.111 0.889 45 H 0.081 0.919 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.178 19.579 25.338 32.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.132 4.132 3 H 0.139 0.861 4 C 0.300 3.700 5 O -0.465 6.465 6 N -0.331 5.331 7 C -0.029 4.029 8 C -0.021 4.021 9 O -0.402 6.402 10 C 0.008 3.992 11 C 0.025 3.975 12 N -0.387 5.387 13 C -0.386 4.386 14 H 0.093 0.907 15 C -0.267 4.267 16 N -0.620 5.620 17 Si 0.810 3.190 18 H -0.197 1.197 19 H -0.217 1.217 20 H -0.205 1.205 21 C 0.033 3.967 22 H 0.073 0.927 23 C -0.176 4.176 24 C -0.187 4.187 25 C -0.041 4.041 26 O -0.327 6.327 27 H 0.062 0.938 28 H 0.100 0.900 29 H 0.126 0.874 30 H 0.105 0.895 31 H 0.146 0.854 32 H 0.111 0.889 33 H 0.066 0.934 34 H 0.243 0.757 35 H 0.102 0.898 36 H 0.064 0.936 37 H 0.017 0.983 38 H 0.049 0.951 39 H 0.205 0.795 40 H 0.063 0.937 41 H 0.124 0.876 42 H 0.117 0.883 43 H 0.091 0.909 44 H 0.129 0.871 45 H 0.099 0.901 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -2.452 18.444 24.956 31.129 hybrid contribution 0.576 -0.673 -0.800 1.194 sum -1.877 17.771 24.155 30.047 Atomic orbital electron populations 1.21856 0.89891 1.02824 1.05437 1.21852 0.99215 1.01272 0.90890 0.86054 1.21424 0.76903 0.86310 0.85370 1.90693 1.48334 1.21250 1.86202 1.47849 1.66986 1.12240 1.06005 1.22195 0.97197 0.78148 1.05322 1.22822 0.89057 0.99771 0.90431 1.86551 1.31524 1.71507 1.50656 1.21147 0.95766 0.95931 0.86389 1.20931 0.95843 0.93462 0.87224 1.42422 1.08016 1.61621 1.26663 1.19594 0.90635 1.24431 1.03929 0.90684 1.25704 0.98628 1.02395 1.00004 1.69834 1.17314 1.48314 1.26541 0.85090 0.77917 0.78363 0.77621 1.19695 1.21692 1.20488 1.22638 0.80831 0.98864 0.94400 0.92669 1.23227 0.99222 1.02616 0.92571 1.23264 0.93254 1.04134 0.98016 1.23641 0.98305 0.96959 0.85240 1.88583 1.21101 1.76459 1.46570 0.93808 0.90008 0.87381 0.89537 0.85445 0.88938 0.93400 0.75735 0.89788 0.93599 0.98294 0.95080 0.79490 0.93731 0.87555 0.88313 0.90862 0.87096 0.90098 0.90951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 8.88 71.98 0.64 -1.48 16 2 C -0.11 -2.29 1.52 -11.54 -0.02 -2.30 16 3 H 0.12 1.75 5.94 -2.38 -0.01 1.74 16 4 C 0.51 17.08 6.54 87.65 0.57 17.66 16 5 O -0.59 -26.71 15.36 1.45 0.02 -26.69 16 6 N -0.60 -18.92 2.43 -821.82 -2.00 -20.92 16 7 C 0.09 1.90 5.43 86.38 0.47 2.36 16 8 C 0.06 0.94 7.12 71.98 0.51 1.45 16 9 O -0.59 -13.35 13.13 -148.98 -1.96 -15.31 16 10 C 0.13 5.43 5.47 86.38 0.47 5.90 16 11 C 0.15 7.22 6.58 86.38 0.57 7.79 16 12 N -0.74 -42.72 5.60 -343.44 -1.92 -44.65 16 13 C -0.25 -15.46 9.99 84.03 0.84 -14.63 16 14 H 0.08 4.36 7.83 -2.91 -0.02 4.33 16 15 C -0.08 -4.58 5.50 84.86 0.47 -4.12 16 16 N -0.97 -62.90 13.06 21.65 0.28 -62.62 16 17 Si 0.98 48.33 29.55 68.60 2.03 50.36 16 18 H -0.27 -12.60 7.11 99.48 0.71 -11.90 16 19 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16 20 H -0.28 -13.29 7.11 99.48 0.71 -12.59 16 21 C 0.09 2.01 2.61 31.06 0.08 2.09 16 22 H 0.06 1.56 7.91 -2.39 -0.02 1.54 16 23 C -0.14 -1.52 5.33 31.85 0.17 -1.35 16 24 C -0.15 -1.59 7.15 32.05 0.23 -1.36 16 25 C 0.03 0.57 7.78 72.64 0.56 1.14 16 26 O -0.41 -11.21 10.48 -144.51 -1.51 -12.72 16 27 H 0.04 0.88 8.13 -2.39 -0.02 0.86 16 28 H 0.08 1.00 6.30 -2.38 -0.02 0.98 16 29 H 0.11 0.82 6.85 -2.39 -0.02 0.80 16 30 H 0.09 1.90 8.03 -2.39 -0.02 1.88 16 31 H 0.13 1.60 4.93 -2.39 -0.01 1.59 16 32 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.05 0.76 7.05 -2.39 -0.02 0.75 16 34 H 0.39 5.21 9.12 -74.06 -0.68 4.54 16 35 H 0.08 3.40 7.66 -2.39 -0.02 3.38 16 36 H 0.05 2.20 7.36 -2.39 -0.02 2.18 16 37 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 38 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.37 22.68 7.67 -92.71 -0.71 21.97 16 40 H 0.25 15.80 8.31 -92.71 -0.77 15.03 16 41 H 0.11 0.61 7.62 -2.39 -0.02 0.60 16 42 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 43 H 0.07 0.86 8.14 -2.39 -0.02 0.85 16 44 H 0.11 0.57 8.14 -2.38 -0.02 0.55 16 45 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 46 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 Total: -1.00 -88.83 366.69 0.11 -88.72 By element: Atomic # 1 Polarization: 31.07 SS G_CDS: -0.40 Total: 30.67 kcal Atomic # 6 Polarization: 7.58 SS G_CDS: 5.57 Total: 13.15 kcal Atomic # 7 Polarization: -124.54 SS G_CDS: -3.64 Total: -128.18 kcal Atomic # 8 Polarization: -51.27 SS G_CDS: -3.45 Total: -54.72 kcal Atomic # 14 Polarization: 48.33 SS G_CDS: 2.03 Total: 50.36 kcal Total: -88.83 0.11 -88.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672673600.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.097 kcal (2) G-P(sol) polarization free energy of solvation -88.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds