Wall clock time and date at job start Fri Apr 10 2020 17:47:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.46645 * 2 1 4 4 C 1.50698 * 109.47042 * 120.00301 * 2 1 3 5 5 O 1.21272 * 120.00281 * 107.99907 * 4 2 1 6 6 N 1.34778 * 119.99695 * 287.99209 * 4 2 1 7 7 C 1.46494 * 120.00353 * 6.57140 * 6 4 2 8 8 C 1.53002 * 109.47639 * 95.56553 * 7 6 4 9 9 O 1.42903 * 109.47014 * 66.64727 * 8 7 6 10 10 C 1.46501 * 119.99919 * 186.56668 * 6 4 2 11 11 C 1.52995 * 109.47292 * 90.00249 * 10 6 4 12 12 N 1.46501 * 109.47411 * 180.02562 * 11 10 6 13 13 C 1.36940 * 120.00025 * 180.02562 * 12 11 10 14 14 H 1.07996 * 119.99778 * 359.97438 * 13 12 11 15 15 C 1.38816 * 119.99783 * 179.97438 * 13 12 11 16 16 N 1.31619 * 119.99978 * 179.97438 * 15 13 12 17 17 Si 1.86800 * 120.00109 * 359.97438 * 15 13 12 18 18 H 1.48499 * 109.47154 * 90.00177 * 17 15 13 19 19 H 1.48501 * 109.47042 * 210.00302 * 17 15 13 20 20 H 1.48501 * 109.47110 * 329.99994 * 17 15 13 21 21 C 1.53000 * 109.47111 * 240.00394 * 2 1 3 22 22 H 1.09001 * 109.86704 * 299.29870 * 21 2 1 23 23 C 1.54100 * 109.87923 * 60.30266 * 21 2 1 24 24 C 1.54808 * 104.18537 * 121.60372 * 23 21 2 25 25 C 1.54998 * 102.09155 * 20.88192 * 24 23 21 26 26 O 1.43736 * 110.00139 * 178.21230 * 21 2 1 27 27 H 1.09006 * 109.46983 * 186.58184 * 1 2 3 28 28 H 1.09003 * 109.47151 * 306.57686 * 1 2 3 29 29 H 1.08996 * 109.47277 * 66.58351 * 1 2 3 30 30 H 1.09005 * 109.47644 * 215.56828 * 7 6 4 31 31 H 1.09004 * 109.46980 * 335.56013 * 7 6 4 32 32 H 1.09000 * 109.47563 * 186.64996 * 8 7 6 33 33 H 1.08996 * 109.46906 * 306.65138 * 8 7 6 34 34 H 0.96696 * 113.99930 * 180.02562 * 9 8 7 35 35 H 1.09000 * 109.47437 * 210.00358 * 10 6 4 36 36 H 1.09002 * 109.47262 * 330.00385 * 10 6 4 37 37 H 1.09009 * 109.46963 * 300.00171 * 11 10 6 38 38 H 1.08997 * 109.47551 * 59.99920 * 11 10 6 39 39 H 0.97002 * 119.99906 * 359.97438 * 12 11 10 40 40 H 0.96995 * 120.00242 * 179.97438 * 16 15 13 41 41 H 1.09002 * 110.48709 * 240.28230 * 23 21 2 42 42 H 1.08998 * 110.49056 * 2.79368 * 23 21 2 43 43 H 1.09004 * 110.90602 * 139.07429 * 24 23 21 44 44 H 1.08997 * 110.91004 * 262.64566 * 24 23 21 45 45 H 1.09005 * 110.61971 * 81.47921 * 25 24 23 46 46 H 1.09005 * 110.61390 * 204.31542 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.5404 -1.8072 1.1324 6 7 1.9170 -0.1268 2.4398 7 6 1.1768 1.1296 2.5792 8 6 -0.2615 0.8297 3.0061 9 8 -0.2622 0.2810 4.3256 10 6 2.5318 -0.7490 3.6150 11 6 3.9591 -0.2241 3.7820 12 7 4.5742 -0.8468 4.9569 13 6 5.8589 -0.5275 5.3073 14 1 6.4188 0.1829 4.7173 15 6 6.4414 -1.1172 6.4209 16 7 7.6764 -0.8108 6.7574 17 14 5.4726 -2.3455 7.4417 18 1 5.6934 -3.7143 6.9100 19 1 5.9277 -2.2836 8.8539 20 1 4.0265 -2.0149 7.3728 21 6 2.0400 -0.7212 -1.2493 22 1 1.6905 -1.7536 -1.2496 23 6 1.5378 0.0024 -2.5137 24 6 2.8325 0.3863 -3.2706 25 6 3.8649 -0.6014 -2.6698 26 8 3.4767 -0.6914 -1.2821 27 1 -0.3633 -1.0210 0.1178 28 1 -0.3633 0.6124 0.8253 29 1 -0.3633 0.4084 -0.9430 30 1 1.6573 1.7527 3.3336 31 1 1.1704 1.6554 1.6244 32 1 -0.8434 1.7514 2.9955 33 1 -0.7038 0.1129 2.3143 34 1 -1.1430 0.0659 4.6616 35 1 1.9485 -0.5043 4.5027 36 1 2.5557 -1.8307 3.4828 37 1 4.5425 -0.4689 2.8943 38 1 3.9354 0.8576 3.9143 39 1 4.0711 -1.4846 5.4870 40 1 8.0834 -1.2225 7.5357 41 1 0.9263 -0.6669 -3.1188 42 1 0.9726 0.8944 -2.2438 43 1 2.7186 0.2254 -4.3427 44 1 3.1137 1.4185 -3.0618 45 1 3.7905 -1.5756 -3.1532 46 1 4.8756 -0.2041 -2.7632 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001672673601.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:47:48 Heat of formation + Delta-G solvation = -107.622237 kcal Electronic energy + Delta-G solvation = -25912.746009 eV Core-core repulsion = 22224.418278 eV Total energy + Delta-G solvation = -3688.327731 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 300.188 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.56849 -39.09610 -37.22534 -35.60055 -34.70917 -33.89179 -32.09872 -31.41634 -29.75282 -28.21619 -27.73440 -24.94015 -23.40529 -23.20502 -22.30979 -21.33871 -20.61494 -18.88986 -17.97061 -17.44100 -17.24461 -16.59626 -16.13673 -15.89584 -15.51271 -14.85199 -14.59233 -14.29448 -13.90074 -13.85443 -13.73187 -13.58422 -13.42099 -13.15407 -12.64341 -12.53015 -12.25596 -12.13634 -11.94972 -11.84982 -11.56714 -11.40205 -11.35437 -11.25222 -10.96020 -10.93786 -10.86577 -10.56249 -10.13905 -10.06136 -9.71448 -9.50978 -9.44594 -8.77584 -8.41532 -7.11607 -5.66036 -3.00924 2.82269 3.08738 3.47678 3.51539 3.54124 3.67840 4.03073 4.25983 4.31433 4.53463 4.64522 4.70187 4.73211 4.82234 4.91189 4.96485 5.03021 5.06364 5.10221 5.20873 5.30861 5.35081 5.41765 5.45885 5.51905 5.58228 5.62026 5.65144 5.74007 5.76769 5.82422 5.87612 5.92252 5.97637 6.23483 6.61573 6.80073 6.86572 7.00417 7.42914 7.62678 8.10552 8.40947 8.52852 9.32193 10.04670 10.25072 11.52610 Molecular weight = 300.19amu Principal moments of inertia in cm(-1) A = 0.014901 B = 0.004062 C = 0.003392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.628871 B = 6890.993384 C = 8252.580413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.111 4.111 3 H 0.100 0.900 4 C 0.519 3.481 5 O -0.521 6.521 6 N -0.602 5.602 7 C 0.104 3.896 8 C 0.051 3.949 9 O -0.562 6.562 10 C 0.107 3.893 11 C 0.147 3.853 12 N -0.753 5.753 13 C -0.239 4.239 14 H 0.089 0.911 15 C 0.003 3.997 16 N -0.937 5.937 17 Si 0.885 3.115 18 H -0.284 1.284 19 H -0.291 1.291 20 H -0.276 1.276 21 C 0.096 3.904 22 H 0.075 0.925 23 C -0.153 4.153 24 C -0.156 4.156 25 C 0.043 3.957 26 O -0.356 6.356 27 H 0.064 0.936 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.090 0.910 31 H 0.094 0.906 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.376 0.624 35 H 0.087 0.913 36 H 0.079 0.921 37 H 0.029 0.971 38 H 0.024 0.976 39 H 0.361 0.639 40 H 0.259 0.741 41 H 0.076 0.924 42 H 0.080 0.920 43 H 0.078 0.922 44 H 0.077 0.923 45 H 0.059 0.941 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.254 5.983 -19.755 30.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.133 4.133 3 H 0.118 0.882 4 C 0.306 3.694 5 O -0.395 6.395 6 N -0.335 5.335 7 C -0.020 4.020 8 C -0.028 4.028 9 O -0.367 6.367 10 C -0.015 4.015 11 C 0.019 3.981 12 N -0.399 5.399 13 C -0.369 4.369 14 H 0.107 0.893 15 C -0.193 4.193 16 N -0.585 5.585 17 Si 0.715 3.285 18 H -0.210 1.210 19 H -0.218 1.218 20 H -0.202 1.202 21 C 0.038 3.962 22 H 0.093 0.907 23 C -0.190 4.190 24 C -0.194 4.194 25 C -0.034 4.034 26 O -0.275 6.275 27 H 0.083 0.917 28 H 0.094 0.906 29 H 0.090 0.910 30 H 0.108 0.892 31 H 0.112 0.888 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.223 0.777 35 H 0.106 0.894 36 H 0.097 0.903 37 H 0.047 0.953 38 H 0.041 0.959 39 H 0.193 0.807 40 H 0.068 0.932 41 H 0.095 0.905 42 H 0.099 0.901 43 H 0.097 0.903 44 H 0.095 0.905 45 H 0.077 0.923 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -20.957 5.559 -19.692 29.289 hybrid contribution -1.289 -0.771 0.661 1.641 sum -22.246 4.788 -19.031 29.665 Atomic orbital electron populations 1.22157 0.92450 1.03420 1.03444 1.21497 0.97217 1.01199 0.93358 0.88200 1.20375 0.78938 0.86084 0.84044 1.90726 1.43252 1.19941 1.85600 1.47729 1.53533 1.24155 1.08085 1.21728 0.90762 0.86872 1.02654 1.22973 0.97538 0.97421 0.84865 1.86601 1.33814 1.85319 1.30982 1.21717 0.94299 0.98632 0.86863 1.20892 0.90954 0.95674 0.90609 1.42557 1.14380 1.52447 1.30501 1.19056 0.87941 1.21152 1.08708 0.89295 1.24653 0.96135 1.00027 0.98453 1.69706 1.12972 1.47120 1.28714 0.86522 0.79712 0.82175 0.80052 1.21032 1.21770 1.20233 1.22483 0.82272 0.98906 0.92565 0.90681 1.23076 0.98326 1.01274 0.96372 1.23146 0.95184 1.00714 1.00312 1.23552 0.99052 0.98123 0.82633 1.89065 1.19419 1.94944 1.24041 0.91723 0.90619 0.91013 0.89176 0.88796 0.92822 0.92762 0.77716 0.89422 0.90258 0.95313 0.95855 0.80673 0.93151 0.90518 0.90102 0.90349 0.90458 0.92300 0.88949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.11 8.17 37.16 0.30 -0.80 16 2 C -0.11 -1.19 1.54 -91.77 -0.14 -1.33 16 3 H 0.10 0.95 7.03 -51.93 -0.37 0.59 16 4 C 0.52 8.12 6.73 -10.99 -0.07 8.05 16 5 O -0.52 -10.62 15.19 -4.47 -0.07 -10.69 16 6 N -0.60 -8.93 2.47 -173.69 -0.43 -9.36 16 7 C 0.10 1.08 5.33 -4.04 -0.02 1.06 16 8 C 0.05 0.42 6.38 37.16 0.24 0.66 16 9 O -0.56 -5.90 12.06 -35.23 -0.42 -6.33 16 10 C 0.11 1.99 5.42 -4.04 -0.02 1.97 16 11 C 0.15 3.29 6.58 -4.04 -0.03 3.27 16 12 N -0.75 -19.90 5.41 -59.91 -0.32 -20.23 16 13 C -0.24 -7.31 10.47 -15.06 -0.16 -7.47 16 14 H 0.09 2.90 8.06 -52.49 -0.42 2.48 16 15 C 0.00 0.08 5.50 -17.43 -0.10 -0.01 16 16 N -0.94 -30.84 13.97 55.49 0.78 -30.07 16 17 Si 0.89 23.44 27.74 -169.99 -4.71 18.72 16 18 H -0.28 -7.50 7.11 56.52 0.40 -7.09 16 19 H -0.29 -7.68 7.11 56.52 0.40 -7.28 16 20 H -0.28 -6.89 6.52 56.52 0.37 -6.52 16 21 C 0.10 1.10 2.47 -26.16 -0.06 1.03 16 22 H 0.08 0.95 7.96 -51.93 -0.41 0.53 16 23 C -0.15 -1.12 5.94 -25.20 -0.15 -1.27 16 24 C -0.16 -1.15 7.15 -24.72 -0.18 -1.33 16 25 C 0.04 0.44 7.72 38.21 0.29 0.74 16 26 O -0.36 -5.24 10.54 -45.26 -0.48 -5.71 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.08 0.44 3.64 -51.93 -0.19 0.25 16 29 H 0.07 0.35 6.38 -51.93 -0.33 0.02 16 30 H 0.09 1.03 8.11 -51.93 -0.42 0.61 16 31 H 0.09 0.71 5.39 -51.93 -0.28 0.43 16 32 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.05 0.41 5.87 -51.93 -0.30 0.10 16 34 H 0.38 2.25 9.12 45.56 0.42 2.67 16 35 H 0.09 1.58 6.65 -51.93 -0.35 1.23 16 36 H 0.08 1.61 7.34 -51.93 -0.38 1.23 16 37 H 0.03 0.71 8.14 -51.92 -0.42 0.29 16 38 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.36 9.24 5.53 -40.82 -0.23 9.02 16 40 H 0.26 8.06 8.31 -40.82 -0.34 7.72 16 41 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 42 H 0.08 0.47 6.55 -51.93 -0.34 0.13 16 43 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 46 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 356.73 15.07 5.38 5.38 Total: -1.00 -39.55 356.73 -6.96 -46.51 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: -6.58 Total: 7.24 kcal Atomic # 6 Polarization: 4.64 SS G_CDS: -0.09 Total: 4.55 kcal Atomic # 7 Polarization: -59.68 SS G_CDS: 0.02 Total: -59.66 kcal Atomic # 8 Polarization: -21.76 SS G_CDS: -0.97 Total: -22.73 kcal Atomic # 14 Polarization: 23.44 SS G_CDS: -4.71 Total: 18.72 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -39.55 -6.96 -46.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672673601.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.117 kcal (2) G-P(sol) polarization free energy of solvation -39.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds