Wall clock time and date at job start Fri Apr 10 2020 17:47:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42900 * 109.46490 * 2 1 4 4 C 1.42909 * 113.99576 * 180.02562 * 3 2 1 5 5 H 1.08991 * 109.47109 * 29.99813 * 4 3 2 6 6 C 1.52995 * 109.46948 * 269.99765 * 4 3 2 7 7 C 1.50696 * 109.46966 * 150.00191 * 4 3 2 8 8 O 1.21277 * 120.00316 * 4.99579 * 7 4 3 9 9 N 1.34775 * 119.99778 * 185.00041 * 7 4 3 10 10 C 1.46924 * 120.63263 * 359.97438 * 9 7 4 11 11 C 1.53191 * 108.77817 * 126.39226 * 10 9 7 12 12 C 1.53042 * 109.31021 * 54.63576 * 11 10 9 13 13 C 1.53035 * 109.54021 * 298.63480 * 12 11 10 14 14 C 1.52998 * 109.50087 * 181.31694 * 13 12 11 15 15 O 1.42899 * 109.47120 * 65.16020 * 14 13 12 16 16 N 1.46497 * 109.52686 * 301.39852 * 13 12 11 17 17 C 1.36939 * 120.00108 * 299.85122 * 16 13 12 18 18 H 1.08004 * 119.99572 * 0.02562 * 17 16 13 19 19 C 1.38816 * 120.00007 * 179.97438 * 17 16 13 20 20 N 1.31615 * 119.99653 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 119.99824 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.46952 * 60.00564 * 21 19 17 23 23 H 1.48499 * 109.47031 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47454 * 300.00687 * 21 19 17 25 25 C 1.46929 * 120.63328 * 179.97438 * 9 7 4 26 26 H 1.09008 * 109.47122 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47587 * 300.00139 * 1 2 3 28 28 H 1.09004 * 109.47252 * 59.99960 * 1 2 3 29 29 H 1.08998 * 109.47191 * 240.00529 * 2 1 3 30 30 H 1.08994 * 109.46713 * 119.99501 * 2 1 3 31 31 H 1.09008 * 109.47208 * 60.00152 * 6 4 3 32 32 H 1.09004 * 109.47492 * 179.97438 * 6 4 3 33 33 H 1.08999 * 109.47410 * 300.00266 * 6 4 3 34 34 H 1.08999 * 109.58511 * 6.60547 * 10 9 7 35 35 H 1.09005 * 109.70744 * 246.25091 * 10 9 7 36 36 H 1.09006 * 109.49784 * 294.68835 * 11 10 9 37 37 H 1.08997 * 109.52766 * 174.60233 * 11 10 9 38 38 H 1.09004 * 109.46156 * 178.61474 * 12 11 10 39 39 H 1.09003 * 109.44815 * 58.65469 * 12 11 10 40 40 H 1.08998 * 109.47755 * 185.16694 * 14 13 12 41 41 H 1.09010 * 109.47060 * 305.16707 * 14 13 12 42 42 H 0.96703 * 114.00165 * 180.02562 * 15 14 13 43 43 H 0.97003 * 120.00330 * 119.84983 * 16 13 12 44 44 H 0.97002 * 119.99510 * 180.02562 * 20 19 17 45 45 H 1.08998 * 109.59209 * 113.81639 * 25 9 7 46 46 H 1.09003 * 109.58217 * 353.38921 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 1 3.8631 0.6018 -0.5147 6 6 3.9398 1.5003 1.4417 7 6 3.8340 2.7266 -0.7109 8 8 2.9854 3.5050 -1.0915 9 7 5.1378 2.9942 -0.9234 10 6 6.1774 2.0612 -0.4679 11 6 7.0808 1.7119 -1.6547 12 6 7.6221 3.0018 -2.2756 13 6 6.4570 3.8509 -2.7889 14 6 7.0009 5.1248 -3.4387 15 8 7.7552 4.7811 -4.6027 16 7 5.6920 3.0864 -3.7770 17 6 6.3014 2.6415 -4.9198 18 1 7.3462 2.8539 -5.0923 19 6 5.5766 1.9165 -5.8558 20 7 4.3036 1.6573 -5.6451 21 14 6.4078 1.3103 -7.4149 22 1 7.5337 0.4103 -7.0578 23 1 5.4241 0.5683 -8.2438 24 1 6.9262 2.4708 -8.1829 25 6 5.5465 4.2244 -1.6150 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 1.8934 -0.5137 -0.8900 30 1 1.8933 -0.5137 0.8900 31 1 3.6481 0.5843 1.9556 32 1 5.0264 1.5860 1.4413 33 1 3.5075 2.3587 1.9558 34 1 5.7112 1.1538 -0.0841 35 1 6.7710 2.5277 0.3183 36 1 6.5058 1.1627 -2.4004 37 1 7.9124 1.0968 -1.3109 38 1 8.2849 2.7553 -3.1051 39 1 8.1760 3.5624 -1.5225 40 1 6.1704 5.7715 -3.7217 41 1 7.6438 5.6479 -2.7306 42 1 8.1314 5.5418 -5.0664 43 1 4.7537 2.8952 -3.6218 44 1 3.7972 1.1504 -6.2990 45 1 6.0882 4.8697 -0.9234 46 1 4.6640 4.7442 -1.9880 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001673659885.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:47:53 Heat of formation + Delta-G solvation = -105.671874 kcal Electronic energy + Delta-G solvation = -26928.259132 eV Core-core repulsion = 23240.015976 eV Total energy + Delta-G solvation = -3688.243156 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 300.188 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.21997 -38.36397 -37.17011 -35.72495 -33.93467 -32.56855 -31.74770 -31.24630 -30.03423 -28.56989 -25.70634 -25.39481 -23.75418 -23.28566 -22.52504 -21.68057 -19.43464 -18.34933 -17.30398 -17.17567 -16.49488 -16.22735 -15.72651 -15.37249 -15.00206 -14.54143 -14.19243 -13.96094 -13.84483 -13.58457 -13.21089 -13.12804 -13.03143 -12.75876 -12.41058 -12.23534 -12.20977 -12.02029 -11.84049 -11.73413 -11.31577 -11.16753 -10.98890 -10.74057 -10.69587 -10.34896 -10.33220 -10.06614 -9.89528 -9.72066 -9.45994 -9.13397 -8.94424 -8.71206 -8.20370 -6.81696 -5.55567 -2.83061 2.94105 3.05415 3.53863 3.58702 3.60080 3.93090 4.63781 4.73576 4.90522 4.92100 5.02086 5.11957 5.13890 5.26791 5.30861 5.38575 5.40819 5.46216 5.53919 5.62528 5.66477 5.73380 5.76973 5.82126 5.90451 5.92955 5.94335 6.02571 6.09878 6.14340 6.15612 6.16307 6.37477 6.53654 6.76018 6.86142 6.98430 7.09373 7.21309 7.74749 8.13323 8.38775 8.57023 8.62280 9.73607 10.25425 10.62019 11.66955 Molecular weight = 300.19amu Principal moments of inertia in cm(-1) A = 0.013890 B = 0.005554 C = 0.004514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2015.427051 B = 5040.013701 C = 6201.324052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.054 3.946 3 O -0.357 6.357 4 C 0.073 3.927 5 H 0.087 0.913 6 C -0.176 4.176 7 C 0.521 3.479 8 O -0.520 6.520 9 N -0.596 5.596 10 C 0.105 3.895 11 C -0.130 4.130 12 C -0.116 4.116 13 C 0.188 3.812 14 C 0.074 3.926 15 O -0.535 6.535 16 N -0.704 5.704 17 C -0.204 4.204 18 H 0.092 0.908 19 C -0.026 4.026 20 N -0.940 5.940 21 Si 0.904 3.096 22 H -0.291 1.291 23 H -0.297 1.297 24 H -0.289 1.289 25 C 0.117 3.883 26 H 0.069 0.931 27 H 0.061 0.939 28 H 0.066 0.934 29 H 0.053 0.947 30 H 0.046 0.954 31 H 0.066 0.934 32 H 0.078 0.922 33 H 0.068 0.932 34 H 0.079 0.921 35 H 0.063 0.937 36 H 0.089 0.911 37 H 0.060 0.940 38 H 0.074 0.926 39 H 0.041 0.959 40 H 0.036 0.964 41 H 0.023 0.977 42 H 0.351 0.649 43 H 0.384 0.616 44 H 0.250 0.750 45 H 0.065 0.935 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.976 -0.483 15.578 15.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.022 4.022 3 O -0.275 6.275 4 C 0.012 3.988 5 H 0.105 0.895 6 C -0.233 4.233 7 C 0.308 3.692 8 O -0.395 6.395 9 N -0.331 5.331 10 C -0.017 4.017 11 C -0.168 4.168 12 C -0.156 4.156 13 C 0.095 3.905 14 C -0.007 4.007 15 O -0.337 6.337 16 N -0.344 5.344 17 C -0.335 4.335 18 H 0.109 0.891 19 C -0.220 4.220 20 N -0.590 5.590 21 Si 0.736 3.264 22 H -0.218 1.218 23 H -0.223 1.223 24 H -0.216 1.216 25 C -0.006 4.006 26 H 0.088 0.912 27 H 0.080 0.920 28 H 0.085 0.915 29 H 0.071 0.929 30 H 0.064 0.936 31 H 0.085 0.915 32 H 0.097 0.903 33 H 0.087 0.913 34 H 0.098 0.902 35 H 0.082 0.918 36 H 0.107 0.893 37 H 0.078 0.922 38 H 0.092 0.908 39 H 0.060 0.940 40 H 0.054 0.946 41 H 0.042 0.958 42 H 0.195 0.805 43 H 0.218 0.782 44 H 0.060 0.940 45 H 0.083 0.917 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 2.266 -0.575 15.412 15.589 hybrid contribution 0.544 -0.128 -1.130 1.261 sum 2.810 -0.703 14.282 14.573 Atomic orbital electron populations 1.21714 0.93608 1.02000 1.03337 1.22572 0.95852 0.83763 1.00041 1.88036 1.18449 1.26124 1.94899 1.21817 0.83597 0.97159 0.96241 0.89541 1.22409 1.02171 1.03397 0.95357 1.20187 0.82152 0.87405 0.79499 1.90702 1.49561 1.48932 1.50259 1.47749 1.05055 1.22527 1.57767 1.21933 0.90036 0.92702 0.97070 1.21837 0.98651 0.98890 0.97468 1.21868 0.98536 0.95814 0.99415 1.19956 0.91110 0.90817 0.88658 1.22714 0.93341 0.97600 0.87064 1.86927 1.71147 1.34280 1.41367 1.42409 1.10257 1.62671 1.19099 1.19497 0.95394 1.24085 0.94570 0.89088 1.24753 0.95871 1.02468 0.98887 1.69689 1.07003 1.45934 1.36375 0.86306 0.77803 0.78252 0.84005 1.21791 1.22315 1.21645 1.21688 0.99776 0.85779 0.93320 0.91209 0.92024 0.91465 0.92913 0.93577 0.91525 0.90340 0.91274 0.90239 0.91849 0.89279 0.92176 0.90761 0.94011 0.94566 0.95844 0.80480 0.78172 0.93990 0.91665 0.88837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 10.28 37.16 0.38 -1.30 16 2 C 0.05 0.69 6.47 37.16 0.24 0.94 16 3 O -0.36 -5.93 9.53 -55.09 -0.52 -6.45 16 4 C 0.07 1.10 2.30 -27.89 -0.06 1.04 16 5 H 0.09 1.22 7.08 -51.93 -0.37 0.86 16 6 C -0.18 -1.92 9.10 37.16 0.34 -1.58 16 7 C 0.52 9.70 7.12 -10.99 -0.08 9.62 16 8 O -0.52 -11.98 15.92 -14.30 -0.23 -12.20 16 9 N -0.60 -9.86 2.87 -172.77 -0.50 -10.36 16 10 C 0.11 1.39 4.97 -3.71 -0.02 1.37 16 11 C -0.13 -2.05 5.93 -26.61 -0.16 -2.21 16 12 C -0.12 -1.99 4.43 -26.69 -0.12 -2.11 16 13 C 0.19 3.59 0.68 -131.71 -0.09 3.50 16 14 C 0.07 1.31 6.09 37.16 0.23 1.53 16 15 O -0.53 -10.19 9.91 -35.23 -0.35 -10.54 16 16 N -0.70 -17.34 4.22 -47.13 -0.20 -17.54 16 17 C -0.20 -5.57 8.14 -15.06 -0.12 -5.69 16 18 H 0.09 2.47 5.29 -52.48 -0.28 2.20 16 19 C -0.03 -0.75 5.50 -17.43 -0.10 -0.84 16 20 N -0.94 -29.26 13.06 55.49 0.72 -28.54 16 21 Si 0.90 23.23 29.55 -169.99 -5.02 18.21 16 22 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 23 H -0.30 -7.77 7.11 56.52 0.40 -7.37 16 24 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 25 C 0.12 2.02 5.14 -3.71 -0.02 2.00 16 26 H 0.07 0.61 8.14 -51.92 -0.42 0.19 16 27 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.05 0.69 8.08 -51.93 -0.42 0.27 16 30 H 0.05 0.47 7.87 -51.93 -0.41 0.06 16 31 H 0.07 0.60 7.87 -51.92 -0.41 0.19 16 32 H 0.08 0.73 5.41 -51.93 -0.28 0.44 16 33 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.08 0.90 4.66 -51.93 -0.24 0.66 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.09 1.79 7.53 -51.93 -0.39 1.40 16 37 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.07 1.46 6.98 -51.93 -0.36 1.09 16 39 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.02 0.34 8.14 -51.92 -0.42 -0.08 16 42 H 0.35 4.97 9.12 45.56 0.42 5.39 16 43 H 0.38 10.72 7.65 -40.82 -0.31 10.40 16 44 H 0.25 7.68 8.31 -40.82 -0.34 7.34 16 45 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 46 H 0.09 1.85 7.01 -51.93 -0.36 1.48 16 LS Contribution 356.82 15.07 5.38 5.38 Total: -1.00 -35.48 356.82 -7.08 -42.56 By element: Atomic # 1 Polarization: 19.99 SS G_CDS: -6.78 Total: 13.21 kcal Atomic # 6 Polarization: 5.85 SS G_CDS: 0.42 Total: 6.27 kcal Atomic # 7 Polarization: -56.46 SS G_CDS: 0.03 Total: -56.43 kcal Atomic # 8 Polarization: -28.09 SS G_CDS: -1.10 Total: -29.19 kcal Atomic # 14 Polarization: 23.23 SS G_CDS: -5.02 Total: 18.21 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -35.48 -7.08 -42.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673659885.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.115 kcal (2) G-P(sol) polarization free energy of solvation -35.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds