Wall clock time and date at job start Fri Apr 10 2020 17:47:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42900 * 109.46490 * 2 1 4 4 C 1.42909 * 113.99576 * 180.02562 * 3 2 1 5 5 H 1.08991 * 109.47109 * 29.99813 * 4 3 2 6 6 C 1.52995 * 109.46948 * 269.99765 * 4 3 2 7 7 C 1.50696 * 109.46966 * 150.00191 * 4 3 2 8 8 O 1.21277 * 120.00316 * 4.99579 * 7 4 3 9 9 N 1.34775 * 119.99778 * 185.00041 * 7 4 3 10 10 C 1.46924 * 120.63263 * 359.97438 * 9 7 4 11 11 C 1.53191 * 108.77817 * 126.39226 * 10 9 7 12 12 C 1.53042 * 109.31021 * 54.63576 * 11 10 9 13 13 C 1.53035 * 109.54021 * 298.63480 * 12 11 10 14 14 C 1.52998 * 109.50087 * 181.31694 * 13 12 11 15 15 O 1.42899 * 109.47120 * 65.16020 * 14 13 12 16 16 N 1.46497 * 109.52686 * 301.39852 * 13 12 11 17 17 C 1.36939 * 120.00108 * 299.85122 * 16 13 12 18 18 H 1.08004 * 119.99572 * 0.02562 * 17 16 13 19 19 C 1.38816 * 120.00007 * 179.97438 * 17 16 13 20 20 N 1.31615 * 119.99653 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 119.99824 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.46952 * 60.00564 * 21 19 17 23 23 H 1.48499 * 109.47031 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47454 * 300.00687 * 21 19 17 25 25 C 1.46929 * 120.63328 * 179.97438 * 9 7 4 26 26 H 1.09008 * 109.47122 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47587 * 300.00139 * 1 2 3 28 28 H 1.09004 * 109.47252 * 59.99960 * 1 2 3 29 29 H 1.08998 * 109.47191 * 240.00529 * 2 1 3 30 30 H 1.08994 * 109.46713 * 119.99501 * 2 1 3 31 31 H 1.09008 * 109.47208 * 60.00152 * 6 4 3 32 32 H 1.09004 * 109.47492 * 179.97438 * 6 4 3 33 33 H 1.08999 * 109.47410 * 300.00266 * 6 4 3 34 34 H 1.08999 * 109.58511 * 6.60547 * 10 9 7 35 35 H 1.09005 * 109.70744 * 246.25091 * 10 9 7 36 36 H 1.09006 * 109.49784 * 294.68835 * 11 10 9 37 37 H 1.08997 * 109.52766 * 174.60233 * 11 10 9 38 38 H 1.09004 * 109.46156 * 178.61474 * 12 11 10 39 39 H 1.09003 * 109.44815 * 58.65469 * 12 11 10 40 40 H 1.08998 * 109.47755 * 185.16694 * 14 13 12 41 41 H 1.09010 * 109.47060 * 305.16707 * 14 13 12 42 42 H 0.96703 * 114.00165 * 180.02562 * 15 14 13 43 43 H 0.97003 * 120.00330 * 119.84983 * 16 13 12 44 44 H 0.97002 * 119.99510 * 180.02562 * 20 19 17 45 45 H 1.08998 * 109.59209 * 113.81639 * 25 9 7 46 46 H 1.09003 * 109.58217 * 353.38921 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 1 3.8631 0.6018 -0.5147 6 6 3.9398 1.5003 1.4417 7 6 3.8340 2.7266 -0.7109 8 8 2.9854 3.5050 -1.0915 9 7 5.1378 2.9942 -0.9234 10 6 6.1774 2.0612 -0.4679 11 6 7.0808 1.7119 -1.6547 12 6 7.6221 3.0018 -2.2756 13 6 6.4570 3.8509 -2.7889 14 6 7.0009 5.1248 -3.4387 15 8 7.7552 4.7811 -4.6027 16 7 5.6920 3.0864 -3.7770 17 6 6.3014 2.6415 -4.9198 18 1 7.3462 2.8539 -5.0923 19 6 5.5766 1.9165 -5.8558 20 7 4.3036 1.6573 -5.6451 21 14 6.4078 1.3103 -7.4149 22 1 7.5337 0.4103 -7.0578 23 1 5.4241 0.5683 -8.2438 24 1 6.9262 2.4708 -8.1829 25 6 5.5465 4.2244 -1.6150 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 1.8934 -0.5137 -0.8900 30 1 1.8933 -0.5137 0.8900 31 1 3.6481 0.5843 1.9556 32 1 5.0264 1.5860 1.4413 33 1 3.5075 2.3587 1.9558 34 1 5.7112 1.1538 -0.0841 35 1 6.7710 2.5277 0.3183 36 1 6.5058 1.1627 -2.4004 37 1 7.9124 1.0968 -1.3109 38 1 8.2849 2.7553 -3.1051 39 1 8.1760 3.5624 -1.5225 40 1 6.1704 5.7715 -3.7217 41 1 7.6438 5.6479 -2.7306 42 1 8.1314 5.5418 -5.0664 43 1 4.7537 2.8952 -3.6218 44 1 3.7972 1.1504 -6.2990 45 1 6.0882 4.8697 -0.9234 46 1 4.6640 4.7442 -1.9880 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001673659885.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:47:52 Heat of formation + Delta-G solvation = -133.406124 kcal Electronic energy + Delta-G solvation = -26929.461780 eV Core-core repulsion = 23240.015976 eV Total energy + Delta-G solvation = -3689.445804 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 300.188 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.56303 -39.70462 -38.51047 -37.15259 -35.60843 -34.12571 -33.03989 -32.65606 -31.18714 -30.32861 -26.97593 -26.70646 -25.62410 -24.62052 -23.56651 -22.98441 -20.80787 -19.80584 -19.16866 -18.40432 -17.93125 -17.63274 -16.96563 -16.64811 -16.55122 -15.99004 -15.78367 -15.46564 -15.23365 -14.96955 -14.78912 -14.42277 -14.28487 -13.96331 -13.56849 -13.50542 -13.41433 -13.31684 -13.07080 -12.94868 -12.78680 -12.64820 -12.58527 -12.30348 -12.06605 -11.97775 -11.77555 -11.65406 -11.49158 -11.25394 -10.92105 -10.72345 -10.53728 -10.39987 -9.54671 -8.86522 -7.76484 -5.01923 1.45930 1.49310 1.54982 1.57665 1.82345 2.65508 2.84252 3.42415 3.48735 3.69680 3.79575 3.88008 4.00912 4.02944 4.13975 4.17829 4.27399 4.31909 4.40526 4.45528 4.48469 4.56071 4.57644 4.65696 4.66112 4.78990 4.81743 4.87583 4.91047 5.00074 5.01637 5.05529 5.21087 5.24337 5.33169 5.55377 5.59683 5.71175 5.93244 6.12879 6.43514 6.47438 7.15142 7.20681 7.50860 8.22424 8.45979 9.47668 Molecular weight = 300.19amu Principal moments of inertia in cm(-1) A = 0.013890 B = 0.005554 C = 0.004514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2015.427051 B = 5040.013701 C = 6201.324052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.047 3.953 3 O -0.392 6.392 4 C 0.073 3.927 5 H 0.092 0.908 6 C -0.164 4.164 7 C 0.507 3.493 8 O -0.581 6.581 9 N -0.593 5.593 10 C 0.103 3.897 11 C -0.127 4.127 12 C -0.109 4.109 13 C 0.174 3.826 14 C 0.075 3.925 15 O -0.564 6.564 16 N -0.716 5.716 17 C -0.172 4.172 18 H 0.097 0.903 19 C -0.101 4.101 20 N -0.985 5.985 21 Si 0.962 3.038 22 H -0.281 1.281 23 H -0.309 1.309 24 H -0.285 1.285 25 C 0.119 3.881 26 H 0.097 0.903 27 H 0.067 0.933 28 H 0.041 0.959 29 H 0.041 0.959 30 H 0.080 0.920 31 H 0.091 0.909 32 H 0.101 0.899 33 H 0.060 0.940 34 H 0.100 0.900 35 H 0.110 0.890 36 H 0.035 0.965 37 H 0.093 0.907 38 H 0.046 0.954 39 H 0.084 0.916 40 H 0.021 0.979 41 H 0.071 0.929 42 H 0.374 0.626 43 H 0.362 0.638 44 H 0.238 0.762 45 H 0.110 0.890 46 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.823 -0.727 18.483 19.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.029 4.029 3 O -0.312 6.312 4 C 0.012 3.988 5 H 0.109 0.891 6 C -0.221 4.221 7 C 0.295 3.705 8 O -0.460 6.460 9 N -0.326 5.326 10 C -0.018 4.018 11 C -0.166 4.166 12 C -0.149 4.149 13 C 0.083 3.917 14 C -0.005 4.005 15 O -0.369 6.369 16 N -0.354 5.354 17 C -0.305 4.305 18 H 0.114 0.886 19 C -0.290 4.290 20 N -0.640 5.640 21 Si 0.795 3.205 22 H -0.208 1.208 23 H -0.236 1.236 24 H -0.212 1.212 25 C -0.004 4.004 26 H 0.116 0.884 27 H 0.086 0.914 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.098 0.902 31 H 0.110 0.890 32 H 0.120 0.880 33 H 0.079 0.921 34 H 0.118 0.882 35 H 0.127 0.873 36 H 0.054 0.946 37 H 0.111 0.889 38 H 0.065 0.935 39 H 0.103 0.897 40 H 0.039 0.961 41 H 0.089 0.911 42 H 0.221 0.779 43 H 0.193 0.807 44 H 0.047 0.953 45 H 0.128 0.872 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 5.226 -0.796 18.354 19.100 hybrid contribution -0.246 0.043 -1.975 1.991 sum 4.979 -0.754 16.379 17.135 Atomic orbital electron populations 1.21756 0.92853 1.03528 1.02387 1.22813 0.96612 0.82405 1.01058 1.88001 1.19519 1.28437 1.95196 1.21971 0.83270 0.95000 0.98567 0.89056 1.22374 1.03324 1.04381 0.92039 1.21049 0.82300 0.88093 0.79039 1.90662 1.51309 1.51124 1.52922 1.47900 1.05299 1.22718 1.56716 1.22256 0.89192 0.93442 0.96876 1.21781 0.99469 0.98152 0.97156 1.21768 0.97044 0.96432 0.99623 1.20426 0.91820 0.91205 0.88278 1.22631 0.93737 0.96507 0.87657 1.86793 1.71390 1.36449 1.42302 1.42585 1.09572 1.63366 1.19826 1.19785 0.95155 1.20992 0.94521 0.88599 1.25458 0.96550 1.04717 1.02282 1.69881 1.08631 1.48300 1.37149 0.85331 0.76689 0.77726 0.80787 1.20766 1.23595 1.21241 1.21659 0.98370 0.86648 0.93696 0.88418 0.91424 0.93935 0.94054 0.90203 0.88994 0.88021 0.92072 0.88181 0.87254 0.94581 0.88881 0.93514 0.89714 0.96109 0.91147 0.77880 0.80730 0.95308 0.87231 0.92409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.30 10.28 71.98 0.74 -2.56 16 2 C 0.05 1.18 6.47 71.98 0.47 1.64 16 3 O -0.39 -13.19 9.53 -129.99 -1.24 -14.43 16 4 C 0.07 2.13 2.30 29.85 0.07 2.20 16 5 H 0.09 2.52 7.08 -2.39 -0.02 2.50 16 6 C -0.16 -3.05 9.10 71.98 0.65 -2.39 16 7 C 0.51 19.08 7.12 87.66 0.62 19.70 16 8 O -0.58 -28.24 15.92 15.97 0.25 -27.98 16 9 N -0.59 -18.77 2.87 -818.92 -2.35 -21.12 16 10 C 0.10 2.33 4.97 86.36 0.43 2.76 16 11 C -0.13 -3.66 5.93 30.67 0.18 -3.48 16 12 C -0.11 -3.39 4.43 30.62 0.14 -3.25 16 13 C 0.17 6.40 0.68 3.68 0.00 6.41 16 14 C 0.08 2.50 6.09 71.98 0.44 2.93 16 15 O -0.56 -20.52 9.91 -148.98 -1.48 -22.00 16 16 N -0.72 -36.07 4.22 -303.01 -1.28 -37.35 16 17 C -0.17 -9.56 8.14 84.03 0.68 -8.87 16 18 H 0.10 5.20 5.29 -2.91 -0.02 5.19 16 19 C -0.10 -6.06 5.50 84.86 0.47 -5.59 16 20 N -0.98 -64.49 13.06 21.65 0.28 -64.20 16 21 Si 0.96 49.21 29.55 68.60 2.03 51.23 16 22 H -0.28 -13.69 7.11 99.48 0.71 -12.99 16 23 H -0.31 -16.24 7.11 99.48 0.71 -15.53 16 24 H -0.29 -14.19 7.11 99.48 0.71 -13.48 16 25 C 0.12 3.96 5.14 86.36 0.44 4.41 16 26 H 0.10 1.58 8.14 -2.38 -0.02 1.56 16 27 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.04 1.13 8.14 -2.38 -0.02 1.11 16 29 H 0.04 1.10 8.08 -2.39 -0.02 1.08 16 30 H 0.08 1.43 7.87 -2.39 -0.02 1.41 16 31 H 0.09 1.27 7.87 -2.38 -0.02 1.25 16 32 H 0.10 1.38 5.41 -2.39 -0.01 1.37 16 33 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.10 1.87 4.66 -2.39 -0.01 1.86 16 35 H 0.11 1.60 8.14 -2.38 -0.02 1.58 16 36 H 0.04 1.43 7.53 -2.38 -0.02 1.41 16 37 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 38 H 0.05 1.72 6.98 -2.38 -0.02 1.70 16 39 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 40 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 41 H 0.07 1.72 8.14 -2.38 -0.02 1.70 16 42 H 0.37 9.83 9.12 -74.06 -0.68 9.16 16 43 H 0.36 21.26 7.65 -92.71 -0.71 20.55 16 44 H 0.24 15.46 8.31 -92.71 -0.77 14.69 16 45 H 0.11 2.66 8.14 -2.39 -0.02 2.64 16 46 H 0.06 2.36 7.01 -2.39 -0.02 2.34 16 Total: -1.00 -84.67 356.82 1.16 -83.51 By element: Atomic # 1 Polarization: 38.83 SS G_CDS: -0.39 Total: 38.44 kcal Atomic # 6 Polarization: 8.57 SS G_CDS: 5.34 Total: 13.90 kcal Atomic # 7 Polarization: -119.33 SS G_CDS: -3.34 Total: -122.67 kcal Atomic # 8 Polarization: -61.95 SS G_CDS: -2.46 Total: -64.41 kcal Atomic # 14 Polarization: 49.21 SS G_CDS: 2.03 Total: 51.23 kcal Total: -84.67 1.16 -83.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673659885.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.896 kcal (2) G-P(sol) polarization free energy of solvation -84.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds