Wall clock time and date at job start Fri Apr 10 2020 17:48:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42894 * 114.00079 * 2 1 4 4 C 1.53781 * 113.61492 * 150.00284 * 3 2 1 5 5 C 1.53781 * 87.08321 * 89.20091 * 4 3 2 6 6 C 1.50697 * 113.61261 * 139.98107 * 5 4 3 7 7 O 1.21276 * 120.00451 * 1.52933 * 6 5 4 8 8 N 1.34776 * 119.99653 * 181.80547 * 6 5 4 9 9 C 1.46501 * 120.00251 * 359.72877 * 8 6 5 10 10 C 1.46498 * 119.99996 * 179.72365 * 8 6 5 11 11 C 1.53000 * 109.47180 * 90.00160 * 10 8 6 12 12 H 1.09002 * 109.47034 * 59.99758 * 11 10 8 13 13 O 1.42893 * 109.47029 * 300.00308 * 11 10 8 14 14 C 1.52998 * 109.47632 * 180.02562 * 11 10 8 15 15 N 1.46493 * 109.47363 * 185.00218 * 14 11 10 16 16 C 1.46505 * 119.99726 * 269.99762 * 15 14 11 17 17 C 1.36941 * 120.00190 * 90.00094 * 15 14 11 18 18 H 1.07997 * 119.99719 * 22.67556 * 17 15 14 19 19 C 1.38813 * 119.99870 * 202.67683 * 17 15 14 20 20 N 1.31619 * 119.99804 * 11.49723 * 19 17 15 21 21 Si 1.86801 * 119.99891 * 191.50203 * 19 17 15 22 22 H 1.48501 * 109.46867 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47090 * 120.00173 * 21 19 17 24 24 H 1.48499 * 109.46985 * 240.00120 * 21 19 17 25 25 C 1.53787 * 87.16853 * 25.39148 * 5 4 3 26 26 H 1.08998 * 109.47557 * 59.99543 * 1 2 3 27 27 H 1.09004 * 109.47159 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46853 * 299.99511 * 1 2 3 29 29 H 1.09002 * 112.85062 * 18.80586 * 3 2 1 30 30 H 1.09005 * 113.60998 * 334.65260 * 4 3 2 31 31 H 1.09000 * 113.61440 * 203.75455 * 4 3 2 32 32 H 1.09004 * 113.61363 * 270.80478 * 5 4 3 33 33 H 1.09000 * 109.47429 * 89.99444 * 9 8 6 34 34 H 1.08998 * 109.47228 * 210.00031 * 9 8 6 35 35 H 1.09003 * 109.47128 * 329.99951 * 9 8 6 36 36 H 1.09000 * 109.47585 * 210.00175 * 10 8 6 37 37 H 1.09002 * 109.47334 * 330.00102 * 10 8 6 38 38 H 0.96697 * 114.00293 * 299.99643 * 13 11 10 39 39 H 1.09004 * 109.46572 * 305.00325 * 14 11 10 40 40 H 1.09002 * 109.46688 * 64.99477 * 14 11 10 41 41 H 1.09000 * 109.46962 * 93.93429 * 16 15 14 42 42 H 1.09002 * 109.46670 * 213.93012 * 16 15 14 43 43 H 1.08996 * 109.47198 * 333.93044 * 16 15 14 44 44 H 0.97009 * 119.99417 * 179.97438 * 20 19 17 45 45 H 1.09000 * 113.61416 * 89.15850 * 25 5 4 46 46 H 1.09004 * 113.60834 * 220.05738 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.3756 1.3718 0.7045 5 6 4.0063 1.0352 -0.6571 6 6 5.2712 1.8029 -0.9427 7 8 5.7106 2.5761 -0.1182 8 7 5.9112 1.6343 -2.1168 9 6 5.3804 0.7004 -3.1129 10 6 7.1375 2.3851 -2.3970 11 6 8.3480 1.5831 -1.9149 12 1 8.3807 0.6262 -2.4359 13 8 8.2393 1.3560 -0.5083 14 6 9.6288 2.3674 -2.2069 15 7 10.7927 1.5503 -1.8552 16 6 11.3523 1.6163 -0.5029 17 6 11.3576 0.7249 -2.7905 18 1 11.2130 0.9221 -3.8424 19 6 12.1161 -0.3653 -2.3864 20 7 12.1091 -0.7405 -1.1249 21 14 13.1466 -1.2996 -3.6332 22 1 12.9828 -0.6815 -4.9734 23 1 14.5761 -1.2445 -3.2345 24 1 12.7007 -2.7152 -3.6825 25 6 2.7535 1.6496 -1.3035 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 1.3138 2.0788 0.3238 30 1 3.5176 0.5947 1.4555 31 1 3.6305 2.3666 1.0698 32 1 4.1106 -0.0348 -0.8374 33 1 4.6905 1.2264 -3.7729 34 1 6.2019 0.2890 -3.6993 35 1 4.8536 -0.1092 -2.6076 36 1 7.2205 2.5584 -3.4699 37 1 7.1048 3.3420 -1.8760 38 1 8.2050 2.1656 0.0194 39 1 9.6676 2.6179 -3.2670 40 1 9.6362 3.2837 -1.6165 41 1 10.9179 0.8258 0.1091 42 1 12.4335 1.4864 -0.5504 43 1 11.1219 2.5858 -0.0612 44 1 12.6389 -1.5025 -0.8426 45 1 2.8380 2.7205 -1.4882 46 1 2.3941 1.0964 -2.1713 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001677160044.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:48:11 Heat of formation + Delta-G solvation = -75.007919 kcal Electronic energy + Delta-G solvation = -25579.329030 eV Core-core repulsion = 21892.415562 eV Total energy + Delta-G solvation = -3686.913468 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 300.188 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.56313 -38.80612 -37.12052 -35.70056 -35.19080 -34.38622 -31.27440 -29.76337 -27.46073 -26.86576 -26.36578 -25.89993 -25.68790 -24.51475 -21.94964 -20.46717 -20.24882 -18.91504 -17.48238 -16.79623 -16.42839 -16.17112 -15.78696 -15.65924 -15.31504 -14.74751 -14.69194 -14.44480 -14.03190 -13.68092 -13.41541 -13.16523 -12.91763 -12.77150 -12.66011 -12.40131 -12.27624 -11.96904 -11.65095 -11.61137 -11.43877 -11.03680 -10.89083 -10.82375 -10.63928 -10.59185 -10.30730 -10.20977 -9.91761 -9.87628 -9.84410 -9.59218 -9.35886 -8.50630 -8.25997 -6.60979 -5.63950 -3.10023 2.81663 3.18650 3.36686 3.40563 3.46880 3.49212 4.27299 4.39737 4.54201 4.54408 4.61129 4.91946 5.00121 5.04406 5.10713 5.19424 5.22937 5.30388 5.32827 5.45397 5.48969 5.55192 5.56715 5.64050 5.73308 5.82646 5.86840 5.90948 5.96112 6.05124 6.14131 6.19687 6.59965 6.70487 6.90147 6.91489 6.93177 7.50993 7.57596 7.83807 7.97893 8.40488 8.47165 8.57289 9.31343 9.95133 10.45114 11.40166 Molecular weight = 300.19amu Principal moments of inertia in cm(-1) A = 0.025250 B = 0.003043 C = 0.002968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.649894 B = 9200.468252 C = 9432.068585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.368 6.368 3 C 0.061 3.939 4 C -0.116 4.116 5 C -0.127 4.127 6 C 0.529 3.471 7 O -0.540 6.540 8 N -0.606 5.606 9 C 0.080 3.920 10 C 0.080 3.920 11 C 0.072 3.928 12 H 0.093 0.907 13 O -0.542 6.542 14 C 0.125 3.875 15 N -0.593 5.593 16 C 0.169 3.831 17 C -0.257 4.257 18 H 0.067 0.933 19 C 0.002 3.998 20 N -0.901 5.901 21 Si 0.903 3.097 22 H -0.279 1.279 23 H -0.290 1.290 24 H -0.291 1.291 25 C -0.140 4.140 26 H 0.041 0.959 27 H 0.086 0.914 28 H 0.042 0.958 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.106 0.894 32 H 0.115 0.885 33 H 0.052 0.948 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.361 0.639 39 H 0.048 0.952 40 H 0.040 0.960 41 H 0.034 0.966 42 H 0.040 0.960 43 H -0.008 1.008 44 H 0.251 0.749 45 H 0.091 0.909 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.959 5.387 -1.364 23.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.287 6.287 3 C 0.003 3.997 4 C -0.154 4.154 5 C -0.148 4.148 6 C 0.317 3.683 7 O -0.417 6.417 8 N -0.338 5.338 9 C -0.064 4.064 10 C -0.044 4.044 11 C 0.008 3.992 12 H 0.111 0.889 13 O -0.345 6.345 14 C -0.004 4.004 15 N -0.315 5.315 16 C 0.025 3.975 17 C -0.387 4.387 18 H 0.085 0.915 19 C -0.197 4.197 20 N -0.545 5.545 21 Si 0.733 3.267 22 H -0.204 1.204 23 H -0.217 1.217 24 H -0.218 1.218 25 C -0.178 4.178 26 H 0.060 0.940 27 H 0.105 0.895 28 H 0.061 0.939 29 H 0.095 0.905 30 H 0.099 0.901 31 H 0.124 0.876 32 H 0.133 0.867 33 H 0.070 0.930 34 H 0.092 0.908 35 H 0.089 0.911 36 H 0.096 0.904 37 H 0.098 0.902 38 H 0.207 0.793 39 H 0.067 0.933 40 H 0.058 0.942 41 H 0.053 0.947 42 H 0.058 0.942 43 H 0.011 0.989 44 H 0.061 0.939 45 H 0.110 0.890 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -22.463 4.871 -1.046 23.009 hybrid contribution 0.366 -0.085 -0.721 0.813 sum -22.097 4.786 -1.766 22.678 Atomic orbital electron populations 1.22817 0.80949 1.02825 0.99984 1.87903 1.19680 1.26543 1.94541 1.23126 0.94766 0.85153 0.96643 1.23099 0.92336 1.03995 0.95948 1.22661 0.92018 1.01129 0.98985 1.20299 0.84694 0.82292 0.81003 1.90617 1.67538 1.37949 1.45610 1.47725 1.25886 1.43229 1.16979 1.21779 0.99641 0.92882 0.92086 1.22435 0.84710 0.96191 1.01064 1.23213 0.92743 1.00401 0.82811 0.88864 1.86621 1.96287 1.34864 1.16713 1.21448 0.87240 0.93127 0.98545 1.43850 1.28722 1.48381 1.10528 1.20762 0.97549 0.94331 0.84876 1.19218 1.26973 1.04272 0.88213 0.91522 1.25067 1.01513 0.96867 0.96237 1.70116 1.42520 1.27225 1.14657 0.86217 0.80148 0.79668 0.80681 1.20406 1.21670 1.21782 1.23395 0.94811 1.01459 0.98138 0.94001 0.89548 0.93937 0.90490 0.90075 0.87601 0.86726 0.92955 0.90818 0.91118 0.90362 0.90210 0.79295 0.93329 0.94215 0.94723 0.94172 0.98934 0.93894 0.89037 0.90194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 10.85 101.05 1.10 1.30 16 2 O -0.37 -3.65 10.63 -35.23 -0.37 -4.03 16 3 C 0.06 0.56 4.38 -25.83 -0.11 0.44 16 4 C -0.12 -1.29 7.23 -25.92 -0.19 -1.48 16 5 C -0.13 -1.49 2.86 -90.96 -0.26 -1.75 16 6 C 0.53 7.89 6.71 -10.99 -0.07 7.81 16 7 O -0.54 -9.65 14.28 -3.18 -0.05 -9.69 16 8 N -0.61 -8.49 2.83 -181.57 -0.51 -9.00 16 9 C 0.08 0.86 10.18 59.85 0.61 1.46 16 10 C 0.08 1.19 5.15 -4.04 -0.02 1.17 16 11 C 0.07 1.39 3.48 -26.73 -0.09 1.29 16 12 H 0.09 2.07 8.14 -51.93 -0.42 1.64 16 13 O -0.54 -11.74 11.70 -43.97 -0.51 -12.25 16 14 C 0.13 2.59 5.37 -4.05 -0.02 2.57 16 15 N -0.59 -15.41 2.89 -181.12 -0.52 -15.93 16 16 C 0.17 4.44 8.61 59.85 0.52 4.95 16 17 C -0.26 -7.20 9.67 -15.06 -0.15 -7.35 16 18 H 0.07 1.81 7.85 -52.49 -0.41 1.39 16 19 C 0.00 0.05 5.12 -17.43 -0.09 -0.04 16 20 N -0.90 -27.28 10.61 55.49 0.59 -26.69 16 21 Si 0.90 22.23 29.57 -169.99 -5.03 17.20 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 23 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 24 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 25 C -0.14 -1.26 7.38 -25.83 -0.19 -1.46 16 26 H 0.04 0.23 8.14 -51.93 -0.42 -0.20 16 27 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.04 0.24 8.14 -51.93 -0.42 -0.19 16 29 H 0.08 0.57 7.87 -51.93 -0.41 0.16 16 30 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.11 1.23 7.45 -51.93 -0.39 0.84 16 32 H 0.11 1.36 7.03 -51.93 -0.37 0.99 16 33 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.07 0.81 8.07 -51.93 -0.42 0.39 16 35 H 0.07 0.70 6.26 -51.93 -0.33 0.38 16 36 H 0.08 1.00 8.07 -51.93 -0.42 0.58 16 37 H 0.08 1.22 7.42 -51.93 -0.39 0.84 16 38 H 0.36 7.19 8.45 45.56 0.38 7.58 16 39 H 0.05 0.94 8.03 -51.93 -0.42 0.52 16 40 H 0.04 0.76 7.87 -51.93 -0.41 0.35 16 41 H 0.03 1.00 7.43 -51.93 -0.39 0.61 16 42 H 0.04 1.12 7.20 -51.93 -0.37 0.74 16 43 H -0.01 -0.18 7.85 -51.93 -0.41 -0.59 16 44 H 0.25 7.35 8.31 -40.82 -0.34 7.01 16 45 H 0.09 0.80 8.09 -51.93 -0.42 0.38 16 46 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 LS Contribution 371.05 15.07 5.59 5.59 Total: -1.00 -34.39 371.05 -7.03 -41.43 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: -7.24 Total: 4.43 kcal Atomic # 6 Polarization: 7.91 SS G_CDS: 1.03 Total: 8.94 kcal Atomic # 7 Polarization: -51.17 SS G_CDS: -0.45 Total: -51.62 kcal Atomic # 8 Polarization: -25.03 SS G_CDS: -0.93 Total: -25.97 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.03 Total: 17.20 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.39 -7.03 -41.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677160044.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.580 kcal (2) G-P(sol) polarization free energy of solvation -34.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds