Wall clock time and date at job start Fri Apr 10 2020 17:48:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42894 * 114.00079 * 2 1 4 4 C 1.53781 * 113.61492 * 150.00284 * 3 2 1 5 5 C 1.53781 * 87.08321 * 89.20091 * 4 3 2 6 6 C 1.50697 * 113.61261 * 139.98107 * 5 4 3 7 7 O 1.21276 * 120.00451 * 1.52933 * 6 5 4 8 8 N 1.34776 * 119.99653 * 181.80547 * 6 5 4 9 9 C 1.46501 * 120.00251 * 359.72877 * 8 6 5 10 10 C 1.46498 * 119.99996 * 179.72365 * 8 6 5 11 11 C 1.53000 * 109.47180 * 90.00160 * 10 8 6 12 12 H 1.09002 * 109.47034 * 59.99758 * 11 10 8 13 13 O 1.42893 * 109.47029 * 300.00308 * 11 10 8 14 14 C 1.52998 * 109.47632 * 180.02562 * 11 10 8 15 15 N 1.46493 * 109.47363 * 185.00218 * 14 11 10 16 16 C 1.46505 * 119.99726 * 269.99762 * 15 14 11 17 17 C 1.36941 * 120.00190 * 90.00094 * 15 14 11 18 18 H 1.07997 * 119.99719 * 22.67556 * 17 15 14 19 19 C 1.38813 * 119.99870 * 202.67683 * 17 15 14 20 20 N 1.31619 * 119.99804 * 11.49723 * 19 17 15 21 21 Si 1.86801 * 119.99891 * 191.50203 * 19 17 15 22 22 H 1.48501 * 109.46867 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47090 * 120.00173 * 21 19 17 24 24 H 1.48499 * 109.46985 * 240.00120 * 21 19 17 25 25 C 1.53787 * 87.16853 * 25.39148 * 5 4 3 26 26 H 1.08998 * 109.47557 * 59.99543 * 1 2 3 27 27 H 1.09004 * 109.47159 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46853 * 299.99511 * 1 2 3 29 29 H 1.09002 * 112.85062 * 18.80586 * 3 2 1 30 30 H 1.09005 * 113.60998 * 334.65260 * 4 3 2 31 31 H 1.09000 * 113.61440 * 203.75455 * 4 3 2 32 32 H 1.09004 * 113.61363 * 270.80478 * 5 4 3 33 33 H 1.09000 * 109.47429 * 89.99444 * 9 8 6 34 34 H 1.08998 * 109.47228 * 210.00031 * 9 8 6 35 35 H 1.09003 * 109.47128 * 329.99951 * 9 8 6 36 36 H 1.09000 * 109.47585 * 210.00175 * 10 8 6 37 37 H 1.09002 * 109.47334 * 330.00102 * 10 8 6 38 38 H 0.96697 * 114.00293 * 299.99643 * 13 11 10 39 39 H 1.09004 * 109.46572 * 305.00325 * 14 11 10 40 40 H 1.09002 * 109.46688 * 64.99477 * 14 11 10 41 41 H 1.09000 * 109.46962 * 93.93429 * 16 15 14 42 42 H 1.09002 * 109.46670 * 213.93012 * 16 15 14 43 43 H 1.08996 * 109.47198 * 333.93044 * 16 15 14 44 44 H 0.97009 * 119.99417 * 179.97438 * 20 19 17 45 45 H 1.09000 * 113.61416 * 89.15850 * 25 5 4 46 46 H 1.09004 * 113.60834 * 220.05738 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.3756 1.3718 0.7045 5 6 4.0063 1.0352 -0.6571 6 6 5.2712 1.8029 -0.9427 7 8 5.7106 2.5761 -0.1182 8 7 5.9112 1.6343 -2.1168 9 6 5.3804 0.7004 -3.1129 10 6 7.1375 2.3851 -2.3970 11 6 8.3480 1.5831 -1.9149 12 1 8.3807 0.6262 -2.4359 13 8 8.2393 1.3560 -0.5083 14 6 9.6288 2.3674 -2.2069 15 7 10.7927 1.5503 -1.8552 16 6 11.3523 1.6163 -0.5029 17 6 11.3576 0.7249 -2.7905 18 1 11.2130 0.9221 -3.8424 19 6 12.1161 -0.3653 -2.3864 20 7 12.1091 -0.7405 -1.1249 21 14 13.1466 -1.2996 -3.6332 22 1 12.9828 -0.6815 -4.9734 23 1 14.5761 -1.2445 -3.2345 24 1 12.7007 -2.7152 -3.6825 25 6 2.7535 1.6496 -1.3035 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 1.3138 2.0788 0.3238 30 1 3.5176 0.5947 1.4555 31 1 3.6305 2.3666 1.0698 32 1 4.1106 -0.0348 -0.8374 33 1 4.6905 1.2264 -3.7729 34 1 6.2019 0.2890 -3.6993 35 1 4.8536 -0.1092 -2.6076 36 1 7.2205 2.5584 -3.4699 37 1 7.1048 3.3420 -1.8760 38 1 8.2050 2.1656 0.0194 39 1 9.6676 2.6179 -3.2670 40 1 9.6362 3.2837 -1.6165 41 1 10.9179 0.8258 0.1091 42 1 12.4335 1.4864 -0.5504 43 1 11.1219 2.5858 -0.0612 44 1 12.6389 -1.5025 -0.8426 45 1 2.8380 2.7205 -1.4882 46 1 2.3941 1.0964 -2.1713 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001677160044.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:48:11 Heat of formation + Delta-G solvation = -99.700769 kcal Electronic energy + Delta-G solvation = -25580.399792 eV Core-core repulsion = 21892.415562 eV Total energy + Delta-G solvation = -3687.984230 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 300.188 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.54505 -39.80188 -38.61711 -36.82271 -36.43342 -36.00276 -33.28171 -31.31366 -28.47344 -27.97377 -27.78290 -27.18558 -26.68440 -25.77221 -23.58089 -22.23076 -21.20353 -19.88553 -18.79141 -18.47713 -17.72091 -17.13194 -16.91560 -16.80764 -16.47565 -16.20676 -15.95370 -15.81762 -15.38553 -15.12790 -14.85423 -14.44979 -14.35777 -13.86928 -13.64605 -13.47029 -13.26423 -13.17073 -13.06014 -12.82335 -12.77324 -12.60625 -12.51585 -12.27956 -12.12810 -12.02701 -11.95640 -11.76733 -11.67089 -11.38504 -11.20298 -10.67948 -10.57903 -10.40603 -9.53794 -8.68223 -7.80206 -5.28745 1.45473 1.46307 1.57218 1.69410 2.13821 2.51467 2.73170 3.31997 3.46218 3.55520 3.64904 3.68887 3.75763 3.85151 4.10654 4.17384 4.27222 4.33957 4.37353 4.52675 4.57744 4.60243 4.61335 4.67024 4.74771 4.78913 4.83847 4.85769 4.89488 4.90508 4.99123 5.02584 5.09737 5.19917 5.29717 5.32936 5.56456 5.64394 5.78683 6.30523 6.33715 6.48510 6.97827 7.15760 7.28308 7.88641 8.34033 9.23439 Molecular weight = 300.19amu Principal moments of inertia in cm(-1) A = 0.025250 B = 0.003043 C = 0.002968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.649894 B = 9200.468252 C = 9432.068585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.392 6.392 3 C 0.071 3.929 4 C -0.124 4.124 5 C -0.130 4.130 6 C 0.521 3.479 7 O -0.577 6.577 8 N -0.609 5.609 9 C 0.074 3.926 10 C 0.092 3.908 11 C 0.082 3.918 12 H 0.062 0.938 13 O -0.565 6.565 14 C 0.122 3.878 15 N -0.611 5.611 16 C 0.187 3.813 17 C -0.261 4.261 18 H 0.077 0.923 19 C -0.060 4.060 20 N -0.939 5.939 21 Si 0.971 3.029 22 H -0.261 1.261 23 H -0.293 1.293 24 H -0.295 1.295 25 C -0.124 4.124 26 H 0.055 0.945 27 H 0.094 0.906 28 H 0.051 0.949 29 H 0.098 0.902 30 H 0.068 0.932 31 H 0.097 0.903 32 H 0.112 0.888 33 H 0.083 0.917 34 H 0.069 0.931 35 H 0.077 0.923 36 H 0.108 0.892 37 H 0.080 0.920 38 H 0.367 0.633 39 H 0.068 0.932 40 H 0.058 0.942 41 H -0.001 1.001 42 H 0.013 0.987 43 H 0.023 0.977 44 H 0.245 0.755 45 H 0.097 0.903 46 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.980 6.218 -3.465 25.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.311 6.311 3 C 0.013 3.987 4 C -0.162 4.162 5 C -0.151 4.151 6 C 0.310 3.690 7 O -0.457 6.457 8 N -0.340 5.340 9 C -0.068 4.068 10 C -0.032 4.032 11 C 0.019 3.981 12 H 0.080 0.920 13 O -0.370 6.370 14 C -0.005 4.005 15 N -0.334 5.334 16 C 0.042 3.958 17 C -0.391 4.391 18 H 0.095 0.905 19 C -0.254 4.254 20 N -0.586 5.586 21 Si 0.799 3.201 22 H -0.185 1.185 23 H -0.220 1.220 24 H -0.222 1.222 25 C -0.162 4.162 26 H 0.074 0.926 27 H 0.113 0.887 28 H 0.070 0.930 29 H 0.116 0.884 30 H 0.087 0.913 31 H 0.116 0.884 32 H 0.130 0.870 33 H 0.102 0.898 34 H 0.088 0.912 35 H 0.095 0.905 36 H 0.126 0.874 37 H 0.098 0.902 38 H 0.214 0.786 39 H 0.086 0.914 40 H 0.076 0.924 41 H 0.017 0.983 42 H 0.032 0.968 43 H 0.041 0.959 44 H 0.054 0.946 45 H 0.116 0.884 46 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -24.532 5.719 -3.196 25.392 hybrid contribution 0.936 -0.310 -0.044 0.987 sum -23.596 5.409 -3.239 24.424 Atomic orbital electron populations 1.23014 0.79219 1.03832 1.01102 1.87871 1.21639 1.26968 1.94622 1.23039 0.94109 0.85590 0.95957 1.23113 0.94390 1.03078 0.95603 1.22714 0.91612 1.00648 1.00109 1.20900 0.85427 0.81989 0.80658 1.90591 1.68663 1.39671 1.46742 1.47847 1.25267 1.43430 1.17505 1.21999 1.00095 0.92917 0.91762 1.22175 0.83315 0.95157 1.02532 1.22965 0.94385 0.99162 0.81610 0.91989 1.86589 1.96492 1.35801 1.18152 1.21651 0.85966 0.92953 0.99955 1.44088 1.30799 1.48598 1.09888 1.20423 0.95592 0.94595 0.85190 1.19629 1.26382 1.04026 0.89073 0.90518 1.25904 1.03239 0.98268 0.98038 1.70315 1.43731 1.27828 1.16722 0.85142 0.77913 0.77904 0.79120 1.18455 1.22035 1.22183 1.23346 0.92555 1.01751 0.98576 0.92626 0.88724 0.93042 0.88377 0.91304 0.88438 0.86971 0.89844 0.91184 0.90479 0.87402 0.90203 0.78622 0.91405 0.92367 0.98265 0.96820 0.95900 0.94620 0.88423 0.88614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 10.85 113.37 1.23 1.49 16 2 O -0.39 -7.04 10.63 -148.98 -1.58 -8.63 16 3 C 0.07 1.15 4.38 31.18 0.14 1.29 16 4 C -0.12 -2.71 7.23 31.12 0.22 -2.49 16 5 C -0.13 -2.92 2.86 -11.01 -0.03 -2.95 16 6 C 0.52 15.14 6.71 87.66 0.59 15.73 16 7 O -0.58 -20.63 14.28 5.34 0.08 -20.55 16 8 N -0.61 -16.11 2.83 -846.76 -2.39 -18.51 16 9 C 0.07 1.43 10.18 127.77 1.30 2.73 16 10 C 0.09 2.59 5.15 86.38 0.44 3.04 16 11 C 0.08 3.11 3.48 30.59 0.11 3.21 16 12 H 0.06 2.76 8.14 -2.39 -0.02 2.74 16 13 O -0.57 -24.88 11.70 -140.62 -1.65 -26.53 16 14 C 0.12 4.87 5.37 86.38 0.46 5.33 16 15 N -0.61 -31.72 2.89 -726.94 -2.10 -33.82 16 16 C 0.19 10.00 8.61 127.77 1.10 11.10 16 17 C -0.26 -14.56 9.67 84.03 0.81 -13.75 16 18 H 0.08 4.05 7.85 -2.91 -0.02 4.02 16 19 C -0.06 -3.46 5.12 84.86 0.43 -3.03 16 20 N -0.94 -58.57 10.61 21.65 0.23 -58.34 16 21 Si 0.97 46.08 29.57 68.60 2.03 48.11 16 22 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 23 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 24 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 25 C -0.12 -1.93 7.38 31.18 0.23 -1.70 16 26 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 27 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.10 1.18 7.87 -2.39 -0.02 1.16 16 30 H 0.07 1.63 8.14 -2.38 -0.02 1.61 16 31 H 0.10 2.29 7.45 -2.39 -0.02 2.27 16 32 H 0.11 2.57 7.03 -2.38 -0.02 2.55 16 33 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.07 1.41 8.07 -2.39 -0.02 1.39 16 35 H 0.08 1.38 6.26 -2.39 -0.01 1.37 16 36 H 0.11 2.41 8.07 -2.39 -0.02 2.39 16 37 H 0.08 2.29 7.42 -2.39 -0.02 2.28 16 38 H 0.37 14.84 8.45 -74.06 -0.63 14.22 16 39 H 0.07 2.45 8.03 -2.38 -0.02 2.43 16 40 H 0.06 2.11 7.87 -2.39 -0.02 2.09 16 41 H 0.00 -0.06 7.43 -2.39 -0.02 -0.08 16 42 H 0.01 0.76 7.20 -2.39 -0.02 0.74 16 43 H 0.02 1.05 7.85 -2.39 -0.02 1.03 16 44 H 0.24 14.83 8.31 -92.70 -0.77 14.06 16 45 H 0.10 1.44 8.09 -2.39 -0.02 1.42 16 46 H 0.10 1.21 8.14 -2.38 -0.02 1.19 16 Total: -1.00 -75.95 371.05 1.98 -73.97 By element: Atomic # 1 Polarization: 23.97 SS G_CDS: 0.33 Total: 24.30 kcal Atomic # 6 Polarization: 12.95 SS G_CDS: 7.04 Total: 19.99 kcal Atomic # 7 Polarization: -106.41 SS G_CDS: -4.26 Total: -110.67 kcal Atomic # 8 Polarization: -52.56 SS G_CDS: -3.15 Total: -55.71 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 2.03 Total: 48.11 kcal Total: -75.95 1.98 -73.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677160044.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.728 kcal (2) G-P(sol) polarization free energy of solvation -75.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds