Wall clock time and date at job start Fri Apr 10 2020 17:48:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 110.33774 * 2 1 4 4 C 1.54477 * 110.37222 * 122.25481 * 2 1 3 5 5 C 1.54512 * 104.06759 * 142.91866 * 4 2 1 6 6 H 1.08996 * 110.51440 * 118.77956 * 5 4 2 7 7 C 1.50695 * 110.51042 * 241.35531 * 5 4 2 8 8 O 1.21279 * 120.00260 * 358.09064 * 7 5 4 9 9 N 1.34784 * 119.99817 * 178.09128 * 7 5 4 10 10 C 1.46495 * 120.00116 * 0.02562 * 9 7 5 11 11 C 1.46497 * 119.99885 * 179.97438 * 9 7 5 12 12 C 1.53010 * 109.46789 * 90.00215 * 11 9 7 13 13 O 1.42895 * 109.46626 * 65.00304 * 12 11 9 14 14 C 1.42909 * 113.99357 * 180.02562 * 13 12 11 15 15 C 1.53005 * 109.46677 * 179.97438 * 14 13 12 16 16 N 1.46496 * 109.47400 * 64.99648 * 15 14 13 17 17 C 1.36939 * 120.00077 * 179.97438 * 16 15 14 18 18 H 1.07997 * 119.99728 * 359.72656 * 17 16 15 19 19 C 1.38815 * 119.99845 * 180.02562 * 17 16 15 20 20 N 1.31619 * 119.99884 * 359.72042 * 19 17 16 21 21 Si 1.86798 * 119.99660 * 179.72678 * 19 17 16 22 22 H 1.48493 * 109.47326 * 89.99909 * 21 19 17 23 23 H 1.48506 * 109.46545 * 209.99659 * 21 19 17 24 24 H 1.48498 * 109.47210 * 329.99370 * 21 19 17 25 25 C 1.54489 * 104.17921 * 0.06735 * 5 4 2 26 26 O 1.44431 * 110.46632 * 237.68622 * 2 1 3 27 27 H 1.08997 * 109.47061 * 297.75189 * 1 2 3 28 28 H 1.09003 * 109.47066 * 57.74961 * 1 2 3 29 29 H 1.09000 * 109.47389 * 177.74426 * 1 2 3 30 30 H 1.08996 * 110.51186 * 24.27464 * 4 2 1 31 31 H 1.08998 * 110.51136 * 261.56248 * 4 2 1 32 32 H 1.09008 * 109.47018 * 270.00168 * 10 9 7 33 33 H 1.09003 * 109.47418 * 29.99183 * 10 9 7 34 34 H 1.08991 * 109.47641 * 149.99643 * 10 9 7 35 35 H 1.09001 * 109.47520 * 330.00898 * 11 9 7 36 36 H 1.08999 * 109.47403 * 210.00282 * 11 9 7 37 37 H 1.08997 * 109.47127 * 305.00021 * 12 11 9 38 38 H 1.09000 * 109.46940 * 184.99750 * 12 11 9 39 39 H 1.08993 * 109.47144 * 60.00234 * 14 13 12 40 40 H 1.08994 * 109.47002 * 299.98966 * 14 13 12 41 41 H 1.09007 * 109.47086 * 304.99550 * 15 14 13 42 42 H 1.08993 * 109.46908 * 184.99907 * 15 14 13 43 43 H 0.97004 * 120.00009 * 0.02562 * 16 15 14 44 44 H 0.97000 * 119.99517 * 180.02562 * 20 19 17 45 45 H 1.08998 * 110.37038 * 94.78660 * 25 5 4 46 46 H 1.09000 * 110.36624 * 217.12292 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9088 1.0220 0.0000 4 6 2.0677 -0.7729 1.2247 5 6 3.3194 -1.5028 0.6881 6 1 4.2112 -1.1747 1.2221 7 6 3.1524 -2.9956 0.8091 8 8 2.1482 -3.4549 1.3105 9 7 4.1193 -3.8204 0.3602 10 6 5.3327 -3.2657 -0.2449 11 6 3.9573 -5.2716 0.4783 12 6 3.2691 -5.8117 -0.7770 13 8 4.1206 -5.6172 -1.9080 14 6 3.5688 -6.0893 -3.1388 15 6 4.5605 -5.8301 -4.2748 16 7 5.7691 -6.6296 -4.0599 17 6 6.8031 -6.5617 -4.9552 18 1 6.7258 -5.9221 -5.8220 19 6 7.9481 -7.3197 -4.7518 20 7 8.0421 -8.0994 -3.6956 21 14 9.3554 -7.2329 -5.9771 22 1 10.2964 -6.1569 -5.5748 23 1 10.0718 -8.5335 -6.0009 24 1 8.8169 -6.9396 -7.3295 25 6 3.3934 -1.0850 -0.7974 26 8 2.0350 -0.7233 -1.1436 27 1 -0.3633 0.4785 0.9094 28 1 -0.3633 0.5484 -0.8691 29 1 -0.3634 -1.0268 -0.0404 30 1 1.3283 -1.4917 1.5774 31 1 2.3411 -0.0821 2.0223 32 1 5.1840 -3.1523 -1.3188 33 1 5.5468 -2.2925 0.1969 34 1 6.1700 -3.9394 -0.0632 35 1 3.3480 -5.4992 1.3530 36 1 4.9361 -5.7390 0.5857 37 1 2.3301 -5.2809 -0.9335 38 1 3.0685 -6.8758 -0.6520 39 1 2.6363 -5.5637 -3.3442 40 1 3.3741 -7.1590 -3.0631 41 1 4.8232 -4.7723 -4.2936 42 1 4.1051 -6.1082 -5.2252 43 1 5.8367 -7.2076 -3.2839 44 1 8.8424 -8.6288 -3.5533 45 1 4.0576 -0.2292 -0.9181 46 1 3.7338 -1.9200 -1.4098 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001677497127.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:48:17 Heat of formation + Delta-G solvation = -112.219972 kcal Electronic energy + Delta-G solvation = -25524.239480 eV Core-core repulsion = 21835.712376 eV Total energy + Delta-G solvation = -3688.527103 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 300.188 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.76476 -38.79550 -37.62147 -35.65928 -34.37196 -32.62488 -32.18608 -31.36752 -29.74222 -27.61638 -26.56580 -26.22864 -23.94522 -23.47040 -22.24657 -21.20184 -21.09869 -19.08918 -17.45828 -17.14190 -16.79826 -16.55752 -16.05859 -15.96887 -15.57076 -15.11681 -14.93118 -14.37737 -13.95189 -13.80805 -13.36547 -13.15116 -13.08853 -12.90424 -12.65091 -12.52832 -12.47415 -12.43810 -11.96273 -11.72707 -11.63017 -11.42211 -11.33866 -11.28235 -11.03429 -10.87921 -10.79398 -10.47155 -10.17583 -10.00162 -9.71648 -9.65994 -9.19699 -8.85344 -8.68335 -6.86218 -5.71746 -2.99585 2.49636 2.91181 3.45507 3.50533 3.52346 3.64446 4.04189 4.15844 4.32561 4.58173 4.63077 4.73103 4.80700 4.99154 5.10758 5.17565 5.19601 5.23364 5.29568 5.38005 5.48366 5.49913 5.53861 5.57333 5.59507 5.60792 5.66785 5.67982 5.76448 5.86231 5.89520 5.94354 5.99414 6.00697 6.37909 6.44636 6.61273 6.64345 6.78201 7.30691 7.62423 7.73282 8.07186 8.47039 9.58517 10.17524 10.53711 11.51155 Molecular weight = 300.19amu Principal moments of inertia in cm(-1) A = 0.020931 B = 0.003109 C = 0.003019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.421861 B = 9003.612938 C = 9273.900011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.070 3.930 3 H 0.068 0.932 4 C -0.143 4.143 5 C -0.145 4.145 6 H 0.110 0.890 7 C 0.523 3.477 8 O -0.542 6.542 9 N -0.603 5.603 10 C 0.079 3.921 11 C 0.120 3.880 12 C 0.045 3.955 13 O -0.370 6.370 14 C 0.059 3.941 15 C 0.155 3.845 16 N -0.727 5.727 17 C -0.237 4.237 18 H 0.069 0.931 19 C -0.015 4.015 20 N -0.933 5.933 21 Si 0.906 3.094 22 H -0.290 1.290 23 H -0.292 1.292 24 H -0.282 1.282 25 C 0.052 3.948 26 O -0.367 6.367 27 H 0.069 0.931 28 H 0.062 0.938 29 H 0.066 0.934 30 H 0.101 0.899 31 H 0.079 0.921 32 H 0.070 0.930 33 H 0.064 0.936 34 H 0.079 0.921 35 H 0.094 0.906 36 H 0.090 0.910 37 H 0.046 0.954 38 H 0.055 0.945 39 H 0.042 0.958 40 H 0.047 0.953 41 H 0.025 0.975 42 H 0.031 0.969 43 H 0.387 0.613 44 H 0.254 0.746 45 H 0.072 0.928 46 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.740 15.505 11.934 22.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.012 3.988 3 H 0.086 0.914 4 C -0.180 4.180 5 C -0.167 4.167 6 H 0.128 0.872 7 C 0.311 3.689 8 O -0.420 6.420 9 N -0.335 5.335 10 C -0.064 4.064 11 C -0.003 4.003 12 C -0.033 4.033 13 O -0.289 6.289 14 C -0.018 4.018 15 C 0.028 3.972 16 N -0.372 5.372 17 C -0.368 4.368 18 H 0.087 0.913 19 C -0.211 4.211 20 N -0.582 5.582 21 Si 0.737 3.263 22 H -0.218 1.218 23 H -0.218 1.218 24 H -0.208 1.208 25 C -0.025 4.025 26 O -0.286 6.286 27 H 0.088 0.912 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.119 0.881 31 H 0.098 0.902 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.098 0.902 35 H 0.112 0.888 36 H 0.109 0.891 37 H 0.065 0.935 38 H 0.073 0.927 39 H 0.060 0.940 40 H 0.065 0.935 41 H 0.043 0.957 42 H 0.049 0.951 43 H 0.221 0.779 44 H 0.064 0.936 45 H 0.090 0.910 46 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -12.098 15.327 11.861 22.846 hybrid contribution 0.917 -0.302 -0.311 1.014 sum -11.181 15.024 11.550 22.003 Atomic orbital electron populations 1.21791 0.93094 1.03278 1.02207 1.23010 0.95632 0.95125 0.85035 0.91407 1.23074 0.97021 0.99751 0.98200 1.22677 1.01330 0.93310 0.99347 0.87230 1.20279 0.82639 0.88571 0.77404 1.90642 1.28742 1.77493 1.45104 1.47724 1.19392 1.06530 1.59902 1.21955 0.86509 0.98956 0.98983 1.21576 1.02596 0.79257 0.96868 1.22843 0.93755 0.99389 0.87358 1.88002 1.43099 1.82716 1.15068 1.22774 0.96275 0.97805 0.84973 1.20679 0.87882 0.95613 0.93050 1.42291 1.14135 1.51399 1.29343 1.19242 0.94334 1.20720 1.02528 0.91286 1.24727 0.98397 0.99788 0.98172 1.69675 1.28612 1.31300 1.28586 0.86199 0.82625 0.76823 0.80608 1.21778 1.21845 1.20821 1.23607 0.85284 1.00792 0.92842 1.89253 1.26648 1.74549 1.38129 0.91171 0.91935 0.91492 0.88053 0.90215 0.91171 0.91735 0.90191 0.88774 0.89124 0.93546 0.92661 0.93987 0.93454 0.95688 0.95118 0.77943 0.93634 0.91029 0.87814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.52 37.16 0.35 -0.91 16 2 C 0.07 0.67 3.92 -25.96 -0.10 0.56 16 3 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 4 C -0.14 -1.34 6.21 -25.16 -0.16 -1.50 16 5 C -0.15 -1.43 2.57 -90.20 -0.23 -1.67 16 6 H 0.11 0.80 7.40 -51.93 -0.38 0.42 16 7 C 0.52 6.84 7.02 -10.98 -0.08 6.76 16 8 O -0.54 -8.69 14.86 5.56 0.08 -8.60 16 9 N -0.60 -7.56 2.81 -181.57 -0.51 -8.07 16 10 C 0.08 0.86 8.68 59.84 0.52 1.38 16 11 C 0.12 1.55 5.86 -4.04 -0.02 1.53 16 12 C 0.04 0.65 6.28 37.16 0.23 0.88 16 13 O -0.37 -6.51 9.85 -35.23 -0.35 -6.85 16 14 C 0.06 1.03 6.07 37.16 0.23 1.25 16 15 C 0.16 3.25 6.65 -4.04 -0.03 3.22 16 16 N -0.73 -18.93 5.55 -59.91 -0.33 -19.26 16 17 C -0.24 -6.74 9.99 -15.06 -0.15 -6.89 16 18 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 19 C -0.02 -0.44 5.50 -17.43 -0.10 -0.53 16 20 N -0.93 -28.47 13.06 55.49 0.72 -27.74 16 21 Si 0.91 22.53 29.55 -169.99 -5.02 17.50 16 22 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 23 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 24 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 25 C 0.05 0.53 6.40 37.94 0.24 0.78 16 26 O -0.37 -4.62 11.36 -35.23 -0.40 -5.02 16 27 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.10 1.17 6.23 -51.93 -0.32 0.85 16 31 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.87 7.01 -51.92 -0.36 0.51 16 33 H 0.06 0.51 6.25 -51.93 -0.32 0.19 16 34 H 0.08 0.92 7.89 -51.93 -0.41 0.51 16 35 H 0.09 1.17 7.42 -51.93 -0.39 0.78 16 36 H 0.09 1.14 7.89 -51.93 -0.41 0.73 16 37 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 41 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.39 10.67 7.67 -40.82 -0.31 10.35 16 44 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 45 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.10 1.19 5.67 -51.93 -0.29 0.90 16 LS Contribution 370.31 15.07 5.58 5.58 Total: -1.00 -34.15 370.31 -7.34 -41.50 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: -7.83 Total: 6.10 kcal Atomic # 6 Polarization: 4.17 SS G_CDS: 0.71 Total: 4.88 kcal Atomic # 7 Polarization: -54.96 SS G_CDS: -0.12 Total: -55.08 kcal Atomic # 8 Polarization: -19.82 SS G_CDS: -0.66 Total: -20.48 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -34.15 -7.34 -41.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677497127.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.724 kcal (2) G-P(sol) polarization free energy of solvation -34.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds