Wall clock time and date at job start Fri Apr 10 2020 17:48:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 110.33774 * 2 1 4 4 C 1.54477 * 110.37222 * 122.25481 * 2 1 3 5 5 C 1.54512 * 104.06759 * 142.91866 * 4 2 1 6 6 H 1.08996 * 110.51440 * 118.77956 * 5 4 2 7 7 C 1.50695 * 110.51042 * 241.35531 * 5 4 2 8 8 O 1.21279 * 120.00260 * 358.09064 * 7 5 4 9 9 N 1.34784 * 119.99817 * 178.09128 * 7 5 4 10 10 C 1.46495 * 120.00116 * 0.02562 * 9 7 5 11 11 C 1.46497 * 119.99885 * 179.97438 * 9 7 5 12 12 C 1.53010 * 109.46789 * 90.00215 * 11 9 7 13 13 O 1.42895 * 109.46626 * 65.00304 * 12 11 9 14 14 C 1.42909 * 113.99357 * 180.02562 * 13 12 11 15 15 C 1.53005 * 109.46677 * 179.97438 * 14 13 12 16 16 N 1.46496 * 109.47400 * 64.99648 * 15 14 13 17 17 C 1.36939 * 120.00077 * 179.97438 * 16 15 14 18 18 H 1.07997 * 119.99728 * 359.72656 * 17 16 15 19 19 C 1.38815 * 119.99845 * 180.02562 * 17 16 15 20 20 N 1.31619 * 119.99884 * 359.72042 * 19 17 16 21 21 Si 1.86798 * 119.99660 * 179.72678 * 19 17 16 22 22 H 1.48493 * 109.47326 * 89.99909 * 21 19 17 23 23 H 1.48506 * 109.46545 * 209.99659 * 21 19 17 24 24 H 1.48498 * 109.47210 * 329.99370 * 21 19 17 25 25 C 1.54489 * 104.17921 * 0.06735 * 5 4 2 26 26 O 1.44431 * 110.46632 * 237.68622 * 2 1 3 27 27 H 1.08997 * 109.47061 * 297.75189 * 1 2 3 28 28 H 1.09003 * 109.47066 * 57.74961 * 1 2 3 29 29 H 1.09000 * 109.47389 * 177.74426 * 1 2 3 30 30 H 1.08996 * 110.51186 * 24.27464 * 4 2 1 31 31 H 1.08998 * 110.51136 * 261.56248 * 4 2 1 32 32 H 1.09008 * 109.47018 * 270.00168 * 10 9 7 33 33 H 1.09003 * 109.47418 * 29.99183 * 10 9 7 34 34 H 1.08991 * 109.47641 * 149.99643 * 10 9 7 35 35 H 1.09001 * 109.47520 * 330.00898 * 11 9 7 36 36 H 1.08999 * 109.47403 * 210.00282 * 11 9 7 37 37 H 1.08997 * 109.47127 * 305.00021 * 12 11 9 38 38 H 1.09000 * 109.46940 * 184.99750 * 12 11 9 39 39 H 1.08993 * 109.47144 * 60.00234 * 14 13 12 40 40 H 1.08994 * 109.47002 * 299.98966 * 14 13 12 41 41 H 1.09007 * 109.47086 * 304.99550 * 15 14 13 42 42 H 1.08993 * 109.46908 * 184.99907 * 15 14 13 43 43 H 0.97004 * 120.00009 * 0.02562 * 16 15 14 44 44 H 0.97000 * 119.99517 * 180.02562 * 20 19 17 45 45 H 1.08998 * 110.37038 * 94.78660 * 25 5 4 46 46 H 1.09000 * 110.36624 * 217.12292 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9088 1.0220 0.0000 4 6 2.0677 -0.7729 1.2247 5 6 3.3194 -1.5028 0.6881 6 1 4.2112 -1.1747 1.2221 7 6 3.1524 -2.9956 0.8091 8 8 2.1482 -3.4549 1.3105 9 7 4.1193 -3.8204 0.3602 10 6 5.3327 -3.2657 -0.2449 11 6 3.9573 -5.2716 0.4783 12 6 3.2691 -5.8117 -0.7770 13 8 4.1206 -5.6172 -1.9080 14 6 3.5688 -6.0893 -3.1388 15 6 4.5605 -5.8301 -4.2748 16 7 5.7691 -6.6296 -4.0599 17 6 6.8031 -6.5617 -4.9552 18 1 6.7258 -5.9221 -5.8220 19 6 7.9481 -7.3197 -4.7518 20 7 8.0421 -8.0994 -3.6956 21 14 9.3554 -7.2329 -5.9771 22 1 10.2964 -6.1569 -5.5748 23 1 10.0718 -8.5335 -6.0009 24 1 8.8169 -6.9396 -7.3295 25 6 3.3934 -1.0850 -0.7974 26 8 2.0350 -0.7233 -1.1436 27 1 -0.3633 0.4785 0.9094 28 1 -0.3633 0.5484 -0.8691 29 1 -0.3634 -1.0268 -0.0404 30 1 1.3283 -1.4917 1.5774 31 1 2.3411 -0.0821 2.0223 32 1 5.1840 -3.1523 -1.3188 33 1 5.5468 -2.2925 0.1969 34 1 6.1700 -3.9394 -0.0632 35 1 3.3480 -5.4992 1.3530 36 1 4.9361 -5.7390 0.5857 37 1 2.3301 -5.2809 -0.9335 38 1 3.0685 -6.8758 -0.6520 39 1 2.6363 -5.5637 -3.3442 40 1 3.3741 -7.1590 -3.0631 41 1 4.8232 -4.7723 -4.2936 42 1 4.1051 -6.1082 -5.2252 43 1 5.8367 -7.2076 -3.2839 44 1 8.8424 -8.6288 -3.5533 45 1 4.0576 -0.2292 -0.9181 46 1 3.7338 -1.9200 -1.4098 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001677497127.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:48:16 Heat of formation + Delta-G solvation = -136.526448 kcal Electronic energy + Delta-G solvation = -25525.293488 eV Core-core repulsion = 21835.712376 eV Total energy + Delta-G solvation = -3689.581111 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 300.188 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.67623 -39.74049 -38.93281 -36.86205 -36.16365 -33.64091 -33.28313 -32.82879 -30.96797 -29.27815 -27.55242 -26.97886 -25.53829 -24.88982 -23.18653 -22.79764 -21.95752 -20.04945 -19.23657 -18.38062 -17.76697 -17.62310 -17.22474 -17.06130 -16.63947 -16.37636 -16.21242 -15.76137 -15.45300 -15.04695 -14.71013 -14.57568 -14.25485 -14.13369 -13.86424 -13.44450 -13.32302 -13.23940 -13.16009 -13.02234 -12.79846 -12.71748 -12.59942 -12.52681 -12.18989 -12.12450 -12.11406 -11.92313 -11.72390 -11.69395 -11.06989 -10.95360 -10.61829 -10.50468 -9.72472 -8.97359 -7.91689 -5.20461 1.49135 1.50945 1.51080 1.59489 1.96175 2.58319 2.74836 2.91466 3.35226 3.42029 3.51861 3.84041 3.94464 4.00570 4.04178 4.07541 4.18041 4.27509 4.29659 4.37703 4.43031 4.43967 4.49022 4.50333 4.56251 4.63501 4.65867 4.68914 4.77869 4.80485 4.87417 4.97430 4.98556 5.04653 5.12566 5.17945 5.28519 5.45433 5.50652 5.88306 6.24453 6.30130 6.38398 7.07667 7.36395 8.11446 8.36782 9.31896 Molecular weight = 300.19amu Principal moments of inertia in cm(-1) A = 0.020931 B = 0.003109 C = 0.003019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.421861 B = 9003.612938 C = 9273.900011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.064 3.936 3 H 0.093 0.907 4 C -0.140 4.140 5 C -0.141 4.141 6 H 0.144 0.856 7 C 0.516 3.484 8 O -0.579 6.579 9 N -0.604 5.604 10 C 0.080 3.920 11 C 0.119 3.881 12 C 0.047 3.953 13 O -0.388 6.388 14 C 0.067 3.933 15 C 0.153 3.847 16 N -0.739 5.739 17 C -0.245 4.245 18 H 0.075 0.925 19 C -0.075 4.075 20 N -0.969 5.969 21 Si 0.974 3.026 22 H -0.285 1.285 23 H -0.296 1.296 24 H -0.270 1.270 25 C 0.051 3.949 26 O -0.401 6.401 27 H 0.092 0.908 28 H 0.064 0.936 29 H 0.042 0.958 30 H 0.075 0.925 31 H 0.109 0.891 32 H 0.053 0.947 33 H 0.099 0.901 34 H 0.072 0.928 35 H 0.099 0.901 36 H 0.093 0.907 37 H 0.039 0.961 38 H 0.065 0.935 39 H 0.067 0.933 40 H 0.047 0.953 41 H 0.024 0.976 42 H 0.041 0.959 43 H 0.376 0.624 44 H 0.251 0.749 45 H 0.102 0.898 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.300 17.455 12.003 24.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.008 3.992 3 H 0.111 0.889 4 C -0.178 4.178 5 C -0.162 4.162 6 H 0.161 0.839 7 C 0.306 3.694 8 O -0.459 6.459 9 N -0.335 5.335 10 C -0.062 4.062 11 C -0.004 4.004 12 C -0.030 4.030 13 O -0.307 6.307 14 C -0.010 4.010 15 C 0.027 3.973 16 N -0.382 5.382 17 C -0.377 4.377 18 H 0.093 0.907 19 C -0.267 4.267 20 N -0.619 5.619 21 Si 0.803 3.197 22 H -0.212 1.212 23 H -0.223 1.223 24 H -0.195 1.195 25 C -0.026 4.026 26 O -0.321 6.321 27 H 0.110 0.890 28 H 0.083 0.917 29 H 0.062 0.938 30 H 0.093 0.907 31 H 0.128 0.872 32 H 0.072 0.928 33 H 0.118 0.882 34 H 0.091 0.909 35 H 0.117 0.883 36 H 0.111 0.889 37 H 0.057 0.943 38 H 0.083 0.917 39 H 0.085 0.915 40 H 0.065 0.935 41 H 0.042 0.958 42 H 0.059 0.941 43 H 0.207 0.793 44 H 0.059 0.941 45 H 0.120 0.880 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -11.677 17.311 11.906 24.037 hybrid contribution 0.691 -0.883 -0.328 1.168 sum -10.986 16.428 11.578 22.905 Atomic orbital electron populations 1.21821 0.93015 1.02056 1.03471 1.23242 0.95893 0.95988 0.84127 0.88928 1.23071 0.96108 0.99643 0.98955 1.22766 1.03035 0.90710 0.99652 0.83860 1.20925 0.81949 0.90057 0.76511 1.90625 1.30101 1.78416 1.46763 1.47827 1.19877 1.06285 1.59556 1.22017 0.85503 1.00504 0.98223 1.21556 1.02627 0.80008 0.96181 1.22924 0.93170 1.00020 0.86930 1.87972 1.44173 1.82864 1.15704 1.22633 0.96001 0.98166 0.84220 1.20826 0.86929 0.94620 0.94932 1.42471 1.15312 1.51862 1.28589 1.19647 0.95018 1.20185 1.02847 0.90682 1.25566 1.01076 0.99932 1.00174 1.69836 1.29173 1.32414 1.30513 0.85128 0.79293 0.76450 0.78806 1.21243 1.22255 1.19491 1.23699 0.84978 1.01365 0.92531 1.89220 1.27900 1.75264 1.39734 0.88962 0.91712 0.93834 0.90657 0.87220 0.92800 0.88218 0.90911 0.88307 0.88873 0.94312 0.91718 0.91516 0.93466 0.95824 0.94102 0.79254 0.94066 0.88043 0.89615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.40 9.52 71.98 0.69 -1.71 16 2 C 0.06 1.11 3.92 31.10 0.12 1.23 16 3 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 4 C -0.14 -2.36 6.21 31.61 0.20 -2.16 16 5 C -0.14 -2.47 2.57 -10.52 -0.03 -2.50 16 6 H 0.14 1.53 7.40 -2.39 -0.02 1.52 16 7 C 0.52 13.14 7.02 87.65 0.62 13.76 16 8 O -0.58 -18.72 14.86 -3.03 -0.04 -18.76 16 9 N -0.60 -14.82 2.81 -846.75 -2.38 -17.20 16 10 C 0.08 1.67 8.68 127.77 1.11 2.78 16 11 C 0.12 3.10 5.86 86.38 0.51 3.60 16 12 C 0.05 1.38 6.28 71.99 0.45 1.83 16 13 O -0.39 -13.63 9.85 -148.98 -1.47 -15.09 16 14 C 0.07 2.29 6.07 71.98 0.44 2.73 16 15 C 0.15 6.34 6.65 86.38 0.57 6.91 16 16 N -0.74 -38.61 5.55 -343.45 -1.91 -40.51 16 17 C -0.25 -13.88 9.99 84.03 0.84 -13.04 16 18 H 0.08 4.07 7.83 -2.91 -0.02 4.04 16 19 C -0.08 -4.36 5.50 84.86 0.47 -3.89 16 20 N -0.97 -59.69 13.06 21.65 0.28 -59.40 16 21 Si 0.97 46.17 29.55 68.60 2.03 48.20 16 22 H -0.29 -13.20 7.11 99.48 0.71 -12.50 16 23 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 24 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 25 C 0.05 0.96 6.40 72.49 0.46 1.42 16 26 O -0.40 -9.72 11.36 -148.98 -1.69 -11.41 16 27 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 28 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.07 1.71 6.23 -2.39 -0.01 1.69 16 31 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.05 1.32 7.01 -2.38 -0.02 1.30 16 33 H 0.10 1.33 6.25 -2.39 -0.01 1.32 16 34 H 0.07 1.63 7.89 -2.39 -0.02 1.61 16 35 H 0.10 2.47 7.42 -2.39 -0.02 2.45 16 36 H 0.09 2.36 7.89 -2.39 -0.02 2.34 16 37 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 40 H 0.05 1.62 8.14 -2.39 -0.02 1.61 16 41 H 0.02 0.99 8.14 -2.38 -0.02 0.97 16 42 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 43 H 0.38 21.02 7.67 -92.71 -0.71 20.31 16 44 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 45 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 46 H 0.09 1.91 5.67 -2.39 -0.01 1.90 16 Total: -1.00 -73.93 370.31 1.51 -72.42 By element: Atomic # 1 Polarization: 30.55 SS G_CDS: 0.25 Total: 30.80 kcal Atomic # 6 Polarization: 4.52 SS G_CDS: 6.44 Total: 10.97 kcal Atomic # 7 Polarization: -113.11 SS G_CDS: -4.00 Total: -117.11 kcal Atomic # 8 Polarization: -42.07 SS G_CDS: -3.20 Total: -45.27 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 2.03 Total: 48.20 kcal Total: -73.93 1.51 -72.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677497127.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.109 kcal (2) G-P(sol) polarization free energy of solvation -73.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds