Wall clock time and date at job start Fri Apr 10 2020 17:48:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53012 * 1 3 3 H 1.08991 * 110.33217 * 2 1 4 4 C 1.54479 * 110.36975 * 122.25369 * 2 1 3 5 5 C 1.54510 * 104.05887 * 142.91819 * 4 2 1 6 6 H 1.08998 * 110.50978 * 241.21370 * 5 4 2 7 7 C 1.50703 * 110.50761 * 118.64530 * 5 4 2 8 8 O 1.21277 * 120.00293 * 334.80926 * 7 5 4 9 9 N 1.34773 * 120.00036 * 154.81100 * 7 5 4 10 10 C 1.46507 * 119.99936 * 355.04356 * 9 7 5 11 11 C 1.46500 * 120.00238 * 175.04366 * 9 7 5 12 12 C 1.53007 * 109.47023 * 89.99917 * 11 9 7 13 13 O 1.42898 * 109.46866 * 65.00119 * 12 11 9 14 14 C 1.42906 * 113.99764 * 179.97438 * 13 12 11 15 15 C 1.53001 * 109.47099 * 179.97438 * 14 13 12 16 16 N 1.46495 * 109.47256 * 64.99925 * 15 14 13 17 17 C 1.36933 * 120.00063 * 179.97438 * 16 15 14 18 18 H 1.07999 * 120.00521 * 0.02562 * 17 16 15 19 19 C 1.38817 * 119.99840 * 180.02562 * 17 16 15 20 20 N 1.31615 * 119.99910 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99890 * 179.72451 * 19 17 16 22 22 H 1.48506 * 109.46889 * 60.00021 * 21 19 17 23 23 H 1.48503 * 109.47288 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.47196 * 300.00074 * 21 19 17 25 25 C 1.54475 * 104.06663 * 359.97438 * 5 4 2 26 26 O 1.44424 * 110.46200 * 237.68831 * 2 1 3 27 27 H 1.09000 * 109.46690 * 297.75159 * 1 2 3 28 28 H 1.09004 * 109.46840 * 57.74546 * 1 2 3 29 29 H 1.08995 * 109.46986 * 177.74659 * 1 2 3 30 30 H 1.08997 * 110.51417 * 24.27345 * 4 2 1 31 31 H 1.08998 * 110.50942 * 261.56190 * 4 2 1 32 32 H 1.09000 * 109.46922 * 275.27181 * 10 9 7 33 33 H 1.09001 * 109.46833 * 35.27137 * 10 9 7 34 34 H 1.08996 * 109.47081 * 155.27065 * 10 9 7 35 35 H 1.08996 * 109.47187 * 329.99928 * 11 9 7 36 36 H 1.08996 * 109.47359 * 209.99596 * 11 9 7 37 37 H 1.08996 * 109.46907 * 305.00541 * 12 11 9 38 38 H 1.08998 * 109.46795 * 185.00120 * 12 11 9 39 39 H 1.09008 * 109.46928 * 60.00255 * 14 13 12 40 40 H 1.08997 * 109.47425 * 299.99985 * 14 13 12 41 41 H 1.09004 * 109.47288 * 305.00138 * 15 14 13 42 42 H 1.08996 * 109.46918 * 185.00273 * 15 14 13 43 43 H 0.97004 * 119.99999 * 0.02562 * 16 15 14 44 44 H 0.97007 * 120.00014 * 180.02562 * 20 19 17 45 45 H 1.09001 * 110.37355 * 94.85060 * 25 5 4 46 46 H 1.09001 * 110.37264 * 217.18885 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9088 1.0220 0.0000 4 6 2.0678 -0.7729 1.2247 5 6 3.3194 -1.5028 0.6880 6 1 3.1997 -2.5825 0.7778 7 6 4.5528 -1.0466 1.4241 8 8 4.5781 0.0484 1.9448 9 7 5.6279 -1.8556 1.5036 10 6 5.5603 -3.2183 0.9699 11 6 6.8640 -1.3723 2.1239 12 6 6.8385 -1.6836 3.6217 13 8 6.8475 -3.0995 3.8141 14 6 6.8258 -3.4998 5.1858 15 6 6.8371 -5.0274 5.2715 16 7 8.1031 -5.5371 4.7390 17 6 8.3420 -6.8852 4.7135 18 1 7.5969 -7.5728 5.0855 19 6 9.5419 -7.3680 4.2094 20 7 10.4501 -6.5300 3.7565 21 14 9.8709 -9.2066 4.1817 22 1 8.8373 -9.8820 3.3565 23 1 11.2129 -9.4606 3.5987 24 1 9.8237 -9.7389 5.5672 25 6 3.3895 -1.0851 -0.7975 26 8 2.0350 -0.7233 -1.1436 27 1 -0.3633 0.4785 0.9095 28 1 -0.3633 0.5485 -0.8691 29 1 -0.3633 -1.0268 -0.0404 30 1 1.3284 -1.4917 1.5775 31 1 2.3412 -0.0821 2.0223 32 1 5.1308 -3.8816 1.7206 33 1 4.9360 -3.2279 0.0765 34 1 6.5639 -3.5590 0.7155 35 1 6.9468 -0.2953 1.9780 36 1 7.7190 -1.8680 1.6643 37 1 5.9363 -1.2624 4.0650 38 1 7.7158 -1.2465 4.0986 39 1 5.9234 -3.1162 5.6620 40 1 7.7031 -3.1005 5.6948 41 1 6.0092 -5.4302 4.6880 42 1 6.7311 -5.3337 6.3122 43 1 8.7726 -4.9195 4.4052 44 1 11.2885 -6.8675 3.4039 45 1 4.0533 -0.2293 -0.9203 46 1 3.7281 -1.9201 -1.4109 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001677497128.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:48:19 Heat of formation + Delta-G solvation = -114.737960 kcal Electronic energy + Delta-G solvation = -25064.940871 eV Core-core repulsion = 21376.304580 eV Total energy + Delta-G solvation = -3688.636291 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 300.188 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.76809 -38.95360 -37.66993 -35.65487 -34.38874 -32.71374 -32.21632 -31.40995 -29.80352 -27.63454 -26.59978 -26.26013 -24.07789 -23.49655 -22.14414 -21.39197 -21.13168 -19.12418 -17.77978 -17.16496 -16.70812 -16.32882 -16.16870 -15.88031 -15.39264 -15.25990 -15.17948 -14.44694 -14.06249 -13.74716 -13.50521 -13.20211 -13.07474 -12.93498 -12.77065 -12.65042 -12.60113 -12.30098 -12.21154 -11.81158 -11.68385 -11.66033 -11.37185 -11.13417 -11.02259 -10.90359 -10.78470 -10.51379 -10.09903 -10.04534 -9.91394 -9.69583 -9.23532 -8.86814 -8.72261 -6.88423 -5.73315 -3.01382 2.39317 2.85705 3.44925 3.49129 3.50302 3.55945 4.00632 4.18847 4.34696 4.42233 4.61516 4.68772 4.85883 4.90891 5.02809 5.09571 5.16224 5.25746 5.29219 5.34045 5.41538 5.45236 5.52610 5.55823 5.56704 5.58554 5.63084 5.69855 5.71526 5.73425 5.83751 5.84304 5.92897 5.95900 6.34948 6.41344 6.50289 6.60728 6.74714 7.26043 7.58742 7.70881 8.00470 8.45360 9.56793 10.15494 10.51619 11.49469 Molecular weight = 300.19amu Principal moments of inertia in cm(-1) A = 0.022518 B = 0.002749 C = 0.002653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.152408 B =10184.858468 C =10552.666043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.071 3.929 3 H 0.072 0.928 4 C -0.138 4.138 5 C -0.147 4.147 6 H 0.107 0.893 7 C 0.521 3.479 8 O -0.544 6.544 9 N -0.602 5.602 10 C 0.081 3.919 11 C 0.119 3.881 12 C 0.045 3.955 13 O -0.370 6.370 14 C 0.059 3.941 15 C 0.155 3.845 16 N -0.727 5.727 17 C -0.239 4.239 18 H 0.069 0.931 19 C -0.014 4.014 20 N -0.933 5.933 21 Si 0.907 3.093 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.287 1.287 25 C 0.065 3.935 26 O -0.369 6.369 27 H 0.071 0.929 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.081 0.919 31 H 0.094 0.906 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.082 0.918 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.046 0.954 38 H 0.055 0.945 39 H 0.041 0.959 40 H 0.048 0.952 41 H 0.025 0.975 42 H 0.031 0.969 43 H 0.387 0.613 44 H 0.255 0.745 45 H 0.064 0.936 46 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.178 14.022 -7.297 22.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.013 3.987 3 H 0.090 0.910 4 C -0.176 4.176 5 C -0.169 4.169 6 H 0.125 0.875 7 C 0.309 3.691 8 O -0.422 6.422 9 N -0.334 5.334 10 C -0.061 4.061 11 C -0.003 4.003 12 C -0.033 4.033 13 O -0.289 6.289 14 C -0.018 4.018 15 C 0.028 3.972 16 N -0.371 5.371 17 C -0.370 4.370 18 H 0.087 0.913 19 C -0.210 4.210 20 N -0.582 5.582 21 Si 0.738 3.262 22 H -0.213 1.213 23 H -0.217 1.217 24 H -0.213 1.213 25 C -0.012 4.012 26 O -0.288 6.288 27 H 0.090 0.910 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.100 0.900 31 H 0.113 0.887 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.101 0.899 35 H 0.111 0.889 36 H 0.109 0.891 37 H 0.064 0.936 38 H 0.073 0.927 39 H 0.059 0.941 40 H 0.066 0.934 41 H 0.043 0.957 42 H 0.049 0.951 43 H 0.221 0.779 44 H 0.065 0.935 45 H 0.082 0.918 46 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -16.272 14.233 -7.354 22.835 hybrid contribution 0.705 -0.794 0.385 1.130 sum -15.567 13.438 -6.969 21.714 Atomic orbital electron populations 1.21809 0.93006 1.03022 1.02509 1.23029 0.95333 0.95733 0.84592 0.91030 1.22999 0.95308 0.99940 0.99304 1.22741 0.94076 1.03201 0.96854 0.87458 1.20312 0.84149 0.84611 0.80027 1.90665 1.82212 1.21881 1.47395 1.47780 1.12587 1.14449 1.58577 1.21886 1.03994 0.81847 0.98400 1.21595 0.86326 1.00487 0.91913 1.22834 1.00269 0.83740 0.96487 1.88010 1.95202 1.20102 1.25561 1.22773 0.99076 0.97326 0.82626 1.20677 0.90968 0.88814 0.96773 1.42274 1.15226 1.04886 1.74754 1.19190 1.00032 0.83580 1.34193 0.91349 1.24729 0.96860 0.97588 1.01842 1.69662 1.08025 1.32887 1.47590 0.86275 0.77029 0.85322 0.77588 1.21309 1.21714 1.21335 1.23216 0.85298 1.00470 0.92248 1.89133 1.26538 1.74599 1.38521 0.90995 0.91855 0.91656 0.90034 0.88705 0.91459 0.91863 0.89925 0.88856 0.89054 0.93555 0.92653 0.94083 0.93417 0.95736 0.95130 0.77940 0.93550 0.91804 0.88198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.52 37.16 0.35 -0.70 16 2 C 0.07 0.65 3.92 -25.95 -0.10 0.55 16 3 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 4 C -0.14 -1.31 6.15 -25.16 -0.15 -1.46 16 5 C -0.15 -1.46 2.57 -90.20 -0.23 -1.69 16 6 H 0.11 0.94 6.71 -51.93 -0.35 0.60 16 7 C 0.52 6.52 6.69 -10.99 -0.07 6.44 16 8 O -0.54 -8.30 15.27 5.56 0.08 -8.22 16 9 N -0.60 -7.34 2.84 -181.57 -0.52 -7.85 16 10 C 0.08 0.89 9.47 59.85 0.57 1.46 16 11 C 0.12 1.50 5.82 -4.04 -0.02 1.47 16 12 C 0.04 0.63 6.28 37.16 0.23 0.86 16 13 O -0.37 -6.38 9.85 -35.23 -0.35 -6.73 16 14 C 0.06 1.01 6.07 37.16 0.23 1.23 16 15 C 0.16 3.20 6.64 -4.04 -0.03 3.17 16 16 N -0.73 -18.78 5.55 -59.91 -0.33 -19.11 16 17 C -0.24 -6.75 9.99 -15.06 -0.15 -6.90 16 18 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 19 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 20 N -0.93 -28.36 13.06 55.49 0.72 -27.63 16 21 Si 0.91 22.44 29.55 -169.99 -5.02 17.42 16 22 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 23 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 24 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 25 C 0.07 0.61 7.00 37.93 0.27 0.88 16 26 O -0.37 -3.96 11.35 -35.23 -0.40 -4.36 16 27 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.08 0.67 7.87 -51.93 -0.41 0.26 16 31 H 0.09 1.03 6.82 -51.93 -0.35 0.67 16 32 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.06 0.52 6.28 -51.93 -0.33 0.19 16 34 H 0.08 0.96 7.83 -51.93 -0.41 0.55 16 35 H 0.09 1.11 7.50 -51.93 -0.39 0.72 16 36 H 0.09 1.12 7.86 -51.93 -0.41 0.71 16 37 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.04 0.61 8.14 -51.92 -0.42 0.18 16 40 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 42 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.39 10.60 7.67 -40.82 -0.31 10.28 16 44 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 45 H 0.06 0.63 7.86 -51.93 -0.41 0.22 16 46 H 0.10 0.76 7.90 -51.93 -0.41 0.35 16 LS Contribution 374.39 15.07 5.64 5.64 Total: -1.00 -33.39 374.39 -7.35 -40.73 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: -7.97 Total: 5.31 kcal Atomic # 6 Polarization: 4.02 SS G_CDS: 0.79 Total: 4.81 kcal Atomic # 7 Polarization: -54.48 SS G_CDS: -0.12 Total: -54.60 kcal Atomic # 8 Polarization: -18.65 SS G_CDS: -0.66 Total: -19.31 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.39 -7.35 -40.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677497128.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.003 kcal (2) G-P(sol) polarization free energy of solvation -33.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds