Wall clock time and date at job start Fri Apr 10 2020 17:48:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.87537 * 2 1 4 4 C 1.54108 * 109.87637 * 238.99005 * 2 1 3 5 5 C 1.54809 * 104.18881 * 238.39668 * 4 2 1 6 6 H 1.08996 * 110.90424 * 97.34991 * 5 4 2 7 7 C 1.50696 * 110.90948 * 220.92318 * 5 4 2 8 8 O 1.21289 * 119.99762 * 357.07518 * 7 5 4 9 9 N 1.34774 * 120.00038 * 177.07307 * 7 5 4 10 10 C 1.46498 * 120.00377 * 0.02562 * 9 7 5 11 11 C 1.46506 * 119.99868 * 180.02562 * 9 7 5 12 12 C 1.52997 * 109.47289 * 90.00089 * 11 9 7 13 13 O 1.42891 * 109.47221 * 64.99848 * 12 11 9 14 14 C 1.42905 * 114.00279 * 179.97438 * 13 12 11 15 15 C 1.52996 * 109.47530 * 180.02562 * 14 13 12 16 16 N 1.46506 * 109.47128 * 65.00062 * 15 14 13 17 17 C 1.36931 * 120.00170 * 180.02562 * 16 15 14 18 18 H 1.07999 * 119.99614 * 359.97438 * 17 16 15 19 19 C 1.38810 * 120.00268 * 180.02562 * 17 16 15 20 20 N 1.31618 * 120.00250 * 179.97438 * 19 17 16 21 21 Si 1.86806 * 119.99721 * 359.97438 * 19 17 16 22 22 H 1.48496 * 109.46827 * 90.00581 * 21 19 17 23 23 H 1.48501 * 109.46933 * 210.00430 * 21 19 17 24 24 H 1.48493 * 109.47217 * 330.00303 * 21 19 17 25 25 C 1.54998 * 102.12449 * 339.13924 * 5 4 2 26 26 O 1.43749 * 110.00425 * 121.08770 * 2 1 3 27 27 H 1.08998 * 109.47344 * 181.00643 * 1 2 3 28 28 H 1.09000 * 109.47027 * 301.00932 * 1 2 3 29 29 H 1.08999 * 109.47305 * 61.00153 * 1 2 3 30 30 H 1.09006 * 110.47987 * 119.72399 * 4 2 1 31 31 H 1.08993 * 110.60067 * 357.13159 * 4 2 1 32 32 H 1.08999 * 109.46923 * 270.00446 * 10 9 7 33 33 H 1.08997 * 109.46694 * 29.99578 * 10 9 7 34 34 H 1.08995 * 109.47258 * 149.99854 * 10 9 7 35 35 H 1.09001 * 109.47060 * 210.00357 * 11 9 7 36 36 H 1.09004 * 109.47073 * 329.99846 * 11 9 7 37 37 H 1.09004 * 109.46881 * 185.00331 * 12 11 9 38 38 H 1.09002 * 109.47196 * 304.99846 * 12 11 9 39 39 H 1.08999 * 109.46848 * 300.00631 * 14 13 12 40 40 H 1.09004 * 109.46489 * 59.99914 * 14 13 12 41 41 H 1.08999 * 109.47240 * 185.00127 * 15 14 13 42 42 H 1.09000 * 109.46943 * 305.00245 * 15 14 13 43 43 H 0.97001 * 119.99611 * 0.02562 * 16 15 14 44 44 H 0.96999 * 119.99769 * 179.97438 * 20 19 17 45 45 H 1.08999 * 110.62160 * 155.50287 * 25 5 4 46 46 H 1.08995 * 110.62004 * 278.50694 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0250 0.0000 4 6 2.0539 -0.7466 -1.2421 5 6 2.9226 -1.8883 -0.6603 6 1 2.3592 -2.8201 -0.6127 7 6 4.1851 -2.0664 -1.4636 8 8 4.3736 -1.3926 -2.4543 9 7 5.1046 -2.9745 -1.0812 10 6 4.8767 -3.7889 0.1151 11 6 6.3322 -3.1473 -1.8619 12 6 7.4134 -2.2059 -1.3273 13 8 7.7574 -2.5845 0.0069 14 6 8.7651 -1.7646 0.6022 15 6 9.0525 -2.2592 2.0212 16 7 9.6319 -3.6035 1.9618 17 6 9.9727 -4.2539 3.1176 18 1 9.8147 -3.7757 4.0730 19 6 10.5221 -5.5274 3.0613 20 7 10.8501 -6.1524 4.1723 21 14 10.7959 -6.3543 1.4087 22 1 12.1516 -6.0170 0.9052 23 1 10.6784 -7.8262 1.5662 24 1 9.7755 -5.8769 0.4413 25 6 3.2418 -1.3619 0.7622 26 8 2.0217 -0.6975 1.1568 27 1 -0.3634 -1.0275 0.0180 28 1 -0.3633 0.5294 0.8808 29 1 -0.3634 0.4982 -0.8988 30 1 2.6597 -0.0827 -1.8589 31 1 1.2261 -1.1547 -1.8219 32 1 5.2859 -3.2772 0.9862 33 1 3.8062 -3.9407 0.2525 34 1 5.3684 -4.7543 -0.0035 35 1 6.6744 -4.1787 -1.7774 36 1 6.1332 -2.9151 -2.9082 37 1 8.2970 -2.2695 -1.9625 38 1 7.0375 -1.1827 -1.3292 39 1 9.6766 -1.8195 0.0071 40 1 8.4177 -0.7321 0.6403 41 1 9.7551 -1.5819 2.5068 42 1 8.1237 -2.2887 2.5908 43 1 9.7741 -4.0328 1.1037 44 1 11.2337 -7.0424 4.1329 45 1 3.4645 -2.1888 1.4365 46 1 4.0710 -0.6552 0.7328 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001677497129.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 17:48:21 Heat of formation + Delta-G solvation = -135.147666 kcal Electronic energy + Delta-G solvation = -25420.698745 eV Core-core repulsion = 21731.177422 eV Total energy + Delta-G solvation = -3689.521323 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 300.188 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.66421 -39.88824 -39.01393 -36.93903 -36.24996 -33.75965 -33.45016 -32.90201 -31.13617 -29.57990 -27.57534 -26.94879 -25.25872 -24.88627 -23.25732 -22.82067 -21.99261 -20.13623 -19.74036 -18.69189 -17.75400 -17.60300 -17.10314 -16.93044 -16.60078 -16.29449 -16.21156 -15.88203 -15.64821 -15.01615 -14.75632 -14.61361 -14.32295 -14.19491 -13.94012 -13.73666 -13.55267 -13.43691 -13.31115 -12.98234 -12.92254 -12.81285 -12.73378 -12.46068 -12.29234 -12.13092 -11.91116 -11.85585 -11.76831 -11.72631 -11.00340 -10.95239 -10.76104 -10.54559 -9.75024 -9.27945 -8.00879 -5.33720 1.39783 1.42673 1.44447 1.51320 1.89740 2.50724 2.72334 2.80610 3.28418 3.31272 3.59383 3.67095 3.69924 3.93662 4.02069 4.04706 4.13921 4.15270 4.26763 4.31329 4.39579 4.41722 4.47092 4.51260 4.58336 4.59746 4.61913 4.69728 4.78085 4.80675 4.93086 4.97350 4.97630 5.02868 5.09352 5.11005 5.29345 5.42681 5.76477 5.85265 6.20140 6.24344 6.34223 7.01675 7.10011 7.86016 8.06515 9.20750 Molecular weight = 300.19amu Principal moments of inertia in cm(-1) A = 0.020631 B = 0.003238 C = 0.003084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.887060 B = 8645.991654 C = 9077.050248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.065 3.935 3 H 0.067 0.933 4 C -0.133 4.133 5 C -0.139 4.139 6 H 0.133 0.867 7 C 0.522 3.478 8 O -0.575 6.575 9 N -0.602 5.602 10 C 0.076 3.924 11 C 0.116 3.884 12 C 0.045 3.955 13 O -0.392 6.392 14 C 0.064 3.936 15 C 0.155 3.845 16 N -0.753 5.753 17 C -0.233 4.233 18 H 0.056 0.944 19 C -0.065 4.065 20 N -0.985 5.985 21 Si 0.957 3.043 22 H -0.280 1.280 23 H -0.296 1.296 24 H -0.250 1.250 25 C 0.062 3.938 26 O -0.386 6.386 27 H 0.065 0.935 28 H 0.061 0.939 29 H 0.086 0.914 30 H 0.078 0.922 31 H 0.098 0.902 32 H 0.057 0.943 33 H 0.094 0.906 34 H 0.076 0.924 35 H 0.095 0.905 36 H 0.101 0.899 37 H 0.070 0.930 38 H 0.043 0.957 39 H 0.056 0.944 40 H 0.073 0.927 41 H 0.046 0.954 42 H 0.027 0.973 43 H 0.367 0.633 44 H 0.258 0.742 45 H 0.115 0.885 46 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.919 10.675 -15.244 27.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.008 3.992 3 H 0.085 0.915 4 C -0.171 4.171 5 C -0.160 4.160 6 H 0.150 0.850 7 C 0.311 3.689 8 O -0.455 6.455 9 N -0.333 5.333 10 C -0.066 4.066 11 C -0.006 4.006 12 C -0.032 4.032 13 O -0.311 6.311 14 C -0.013 4.013 15 C 0.029 3.971 16 N -0.399 5.399 17 C -0.364 4.364 18 H 0.074 0.926 19 C -0.256 4.256 20 N -0.636 5.636 21 Si 0.784 3.216 22 H -0.206 1.206 23 H -0.223 1.223 24 H -0.174 1.174 25 C -0.015 4.015 26 O -0.306 6.306 27 H 0.084 0.916 28 H 0.080 0.920 29 H 0.105 0.895 30 H 0.096 0.904 31 H 0.117 0.883 32 H 0.076 0.924 33 H 0.112 0.888 34 H 0.095 0.905 35 H 0.113 0.887 36 H 0.119 0.881 37 H 0.088 0.912 38 H 0.062 0.938 39 H 0.074 0.926 40 H 0.091 0.909 41 H 0.064 0.936 42 H 0.045 0.955 43 H 0.201 0.799 44 H 0.066 0.934 45 H 0.133 0.867 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -19.993 10.860 -15.229 27.378 hybrid contribution 0.940 -0.517 -0.645 1.252 sum -19.053 10.342 -15.875 26.870 Atomic orbital electron populations 1.21930 0.91977 1.03271 1.03222 1.22928 0.96518 0.95711 0.84076 0.91467 1.22937 0.99781 0.96386 0.97983 1.22875 0.94341 1.02838 0.95942 0.84957 1.20599 0.84914 0.78749 0.84632 1.90659 1.79360 1.46883 1.28606 1.47840 1.19081 1.38162 1.28255 1.22050 1.02944 0.95408 0.86198 1.21626 0.82538 1.00680 0.95805 1.22967 0.98024 0.98124 0.84134 1.87965 1.58132 1.56490 1.28537 1.22687 0.90903 0.94252 0.93445 1.20829 0.96034 0.85729 0.94556 1.42622 1.76517 1.16510 1.04230 1.19051 1.32496 0.97908 0.86958 0.92610 1.25510 1.01684 0.97927 1.00521 1.69890 1.50707 1.14906 1.28112 0.85372 0.78632 0.77213 0.80377 1.20625 1.22260 1.17409 1.23582 0.87486 0.97005 0.93449 1.88909 1.39525 1.67931 1.34212 0.91560 0.91995 0.89540 0.90384 0.88335 0.92430 0.88806 0.90521 0.88666 0.88124 0.91175 0.93829 0.92589 0.90928 0.93621 0.95505 0.79920 0.93358 0.86711 0.92924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 9.37 71.98 0.67 -1.11 16 2 C 0.06 1.07 4.05 30.97 0.13 1.20 16 3 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 4 C -0.13 -2.18 6.04 31.59 0.19 -1.99 16 5 C -0.14 -2.37 2.53 -10.24 -0.03 -2.40 16 6 H 0.13 1.70 7.41 -2.39 -0.02 1.69 16 7 C 0.52 11.61 7.07 87.66 0.62 12.23 16 8 O -0.57 -16.30 15.05 -3.06 -0.05 -16.35 16 9 N -0.60 -12.60 2.84 -846.76 -2.40 -15.00 16 10 C 0.08 1.40 8.61 127.77 1.10 2.50 16 11 C 0.12 2.45 5.86 86.38 0.51 2.96 16 12 C 0.05 1.05 6.28 71.98 0.45 1.50 16 13 O -0.39 -11.45 9.85 -148.98 -1.47 -12.92 16 14 C 0.06 1.83 6.07 71.98 0.44 2.26 16 15 C 0.15 5.78 6.65 86.38 0.57 6.35 16 16 N -0.75 -35.28 5.35 -343.45 -1.84 -37.11 16 17 C -0.23 -13.39 10.47 84.03 0.88 -12.51 16 18 H 0.06 3.50 8.06 -2.91 -0.02 3.48 16 19 C -0.07 -3.86 5.50 84.86 0.47 -3.39 16 20 N -0.99 -63.40 13.97 21.65 0.30 -63.10 16 21 Si 0.96 45.46 27.74 68.60 1.90 47.36 16 22 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 23 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 24 H -0.25 -10.71 6.52 99.48 0.65 -10.07 16 25 C 0.06 1.15 6.36 72.67 0.46 1.61 16 26 O -0.39 -8.05 11.19 -148.98 -1.67 -9.72 16 27 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.08 1.56 6.90 -2.38 -0.02 1.54 16 31 H 0.10 1.28 7.70 -2.39 -0.02 1.26 16 32 H 0.06 1.24 7.70 -2.39 -0.02 1.22 16 33 H 0.09 1.20 6.02 -2.39 -0.01 1.18 16 34 H 0.08 1.45 7.89 -2.39 -0.02 1.43 16 35 H 0.10 1.90 7.89 -2.39 -0.02 1.88 16 36 H 0.10 2.05 7.42 -2.38 -0.02 2.03 16 37 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 38 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 41 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 42 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 43 H 0.37 16.58 5.53 -92.71 -0.51 16.07 16 44 H 0.26 15.76 8.31 -92.71 -0.77 14.98 16 45 H 0.11 1.87 6.48 -2.39 -0.02 1.86 16 46 H 0.05 1.11 8.04 -2.39 -0.02 1.09 16 Total: -1.00 -73.68 368.34 1.63 -72.05 By element: Atomic # 1 Polarization: 25.19 SS G_CDS: 0.39 Total: 25.58 kcal Atomic # 6 Polarization: 2.76 SS G_CDS: 6.46 Total: 9.22 kcal Atomic # 7 Polarization: -111.28 SS G_CDS: -3.94 Total: -115.22 kcal Atomic # 8 Polarization: -35.81 SS G_CDS: -3.18 Total: -38.99 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 1.90 Total: 47.36 kcal Total: -73.68 1.63 -72.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677497129.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.099 kcal (2) G-P(sol) polarization free energy of solvation -73.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds